Wall clock time and date at job start Mon Mar 30 2020 04:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46798 * 2 1 4 4 C 1.50693 * 109.46744 * 120.00150 * 2 1 3 5 5 H 1.07998 * 119.99933 * 120.00295 * 4 2 1 6 6 C 1.37871 * 120.00251 * 299.99643 * 4 2 1 7 7 N 1.31514 * 120.00135 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00208 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46879 * 90.00528 * 8 6 4 10 10 H 1.48503 * 109.47431 * 210.00192 * 8 6 4 11 11 H 1.48498 * 109.47283 * 330.00467 * 8 6 4 12 12 C 1.50693 * 109.47018 * 240.00278 * 2 1 3 13 13 O 1.21281 * 120.00081 * 239.99811 * 12 2 1 14 14 N 1.34780 * 120.00335 * 59.99894 * 12 2 1 15 15 C 1.46500 * 120.00182 * 179.97438 * 14 12 2 16 16 H 1.09004 * 109.76958 * 34.32246 * 15 14 12 17 17 C 1.53359 * 109.73919 * 155.00130 * 15 14 12 18 18 O 1.42889 * 109.27625 * 67.39129 * 17 15 14 19 19 C 1.42895 * 114.49916 * 64.93476 * 18 17 15 20 20 C 1.53363 * 109.27379 * 295.07005 * 19 18 17 21 21 C 1.51501 * 108.09940 * 52.25586 * 20 19 18 22 22 O 1.20760 * 121.21636 * 131.60845 * 21 20 19 23 23 H 1.09000 * 109.47307 * 300.00319 * 1 2 3 24 24 H 1.09009 * 109.46844 * 59.99791 * 1 2 3 25 25 H 1.08998 * 109.47028 * 179.97438 * 1 2 3 26 26 H 0.97001 * 120.00501 * 179.97438 * 7 6 4 27 27 H 0.96998 * 120.00001 * 359.97438 * 14 12 2 28 28 H 1.09007 * 109.50432 * 307.45517 * 17 15 14 29 29 H 1.08998 * 109.50862 * 187.33636 * 17 15 14 30 30 H 1.09000 * 109.50392 * 55.00879 * 19 18 17 31 31 H 1.08998 * 109.50521 * 175.12348 * 19 18 17 32 32 H 1.09005 * 109.73545 * 171.90579 * 20 19 18 33 33 H 1.09000 * 109.73366 * 292.60132 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4826 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9491 5.1122 11 1 2.4879 -2.5654 3.7121 12 6 2.0324 -0.7103 -1.2304 13 8 2.7296 -1.6964 -1.1192 14 7 1.7068 -0.2499 -2.4546 15 6 2.1955 -0.9401 -3.6508 16 1 2.2460 -2.0126 -3.4628 17 6 1.2535 -0.6645 -4.8291 18 8 1.3386 0.7159 -5.1883 19 6 2.6137 1.1198 -5.6911 20 6 3.6622 0.9837 -4.5802 21 6 3.5707 -0.4194 -4.0160 22 8 4.5579 -1.0978 -3.8625 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7082 1.1608 3.4844 27 1 1.1488 0.5386 -2.5436 28 1 0.2298 -0.9029 -4.5401 29 1 1.5448 -1.2806 -5.6798 30 1 2.8907 0.4849 -6.5327 31 1 2.5634 2.1581 -6.0189 32 1 4.6578 1.1510 -4.9912 33 1 3.4612 1.7107 -3.7933 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000628875628.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:54 Heat of formation + Delta-G solvation = -123.871297 kcal Electronic energy + Delta-G solvation = -17783.952553 eV Core-core repulsion = 14809.808076 eV Total energy + Delta-G solvation = -2974.144477 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.47387 -38.45308 -37.89574 -34.16954 -33.75212 -31.74428 -30.84994 -29.16470 -25.14382 -24.20220 -23.95732 -22.53791 -19.78197 -19.09157 -16.95040 -16.67881 -16.34320 -16.07168 -15.69851 -15.37919 -14.91528 -14.38145 -14.19703 -13.81050 -13.41312 -12.86216 -12.64196 -12.48778 -12.23555 -11.98690 -11.53387 -11.01585 -10.95139 -10.74372 -10.71057 -10.29265 -10.09875 -9.97306 -9.88014 -8.98954 -8.68167 -8.48020 -8.34831 -6.03892 -4.07162 1.86678 3.34288 3.39634 3.40671 3.47734 3.55839 3.87558 4.03446 4.47051 4.47530 4.63664 4.79232 4.90522 5.10707 5.28920 5.30276 5.36830 5.58420 5.63499 5.80754 6.18644 6.60963 6.77580 6.81047 6.88376 6.93190 7.42805 7.46724 7.74513 7.96068 8.10863 8.38731 9.01971 9.14579 9.58548 11.03676 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.038877 B = 0.006163 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.048610 B = 4542.495721 C = 4850.640899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.032 3.968 3 H 0.053 0.947 4 C -0.502 4.502 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.516 3.484 13 O -0.534 6.534 14 N -0.727 5.727 15 C 0.067 3.933 16 H 0.114 0.886 17 C 0.058 3.942 18 O -0.373 6.373 19 C 0.068 3.932 20 C -0.206 4.206 21 C 0.347 3.653 22 O -0.435 6.435 23 H 0.094 0.906 24 H 0.014 0.986 25 H 0.032 0.968 26 H 0.261 0.739 27 H 0.405 0.595 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 2.746 -16.251 16.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.011 3.989 3 H 0.071 0.929 4 C -0.541 4.541 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.306 3.694 13 O -0.408 6.408 14 N -0.385 5.385 15 C -0.040 4.040 16 H 0.132 0.868 17 C -0.019 4.019 18 O -0.291 6.291 19 C -0.009 4.009 20 C -0.244 4.244 21 C 0.218 3.782 22 O -0.304 6.304 23 H 0.112 0.888 24 H 0.033 0.967 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.241 0.759 28 H 0.133 0.867 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.125 0.875 32 H 0.115 0.885 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.413 1.864 -15.904 16.018 hybrid contribution 0.302 -0.114 0.788 0.852 sum -0.111 1.749 -15.116 15.217 Atomic orbital electron populations 1.21751 0.96299 0.99903 1.01105 1.18875 0.94320 0.96782 0.88897 0.92900 1.21145 1.31051 1.12900 0.88986 0.90788 1.24940 0.95061 0.95073 0.99112 1.69866 1.37025 1.23112 1.23585 0.86444 0.78454 0.80287 0.81997 1.20660 1.21253 1.19732 1.22244 0.78400 0.84401 0.84388 1.90581 1.37257 1.26601 1.86391 1.46210 1.55234 1.33117 1.03973 1.22219 0.92650 1.00696 0.88477 0.86828 1.23028 1.01079 0.83075 0.94748 1.87946 1.31932 1.25621 1.83638 1.22626 0.82469 1.01797 0.93962 1.23039 1.02244 0.97646 1.01510 1.25362 0.90828 0.88672 0.73362 1.90420 1.39832 1.59572 1.40570 0.88765 0.96708 0.94928 0.92928 0.75929 0.86708 0.91355 0.92549 0.87531 0.88514 0.87138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.87 37.16 0.33 -2.66 16 2 C 0.03 0.80 2.64 -92.93 -0.25 0.56 16 3 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.50 -14.37 8.37 -34.45 -0.29 -14.66 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.14 11.32 55.43 0.63 -24.51 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 12 C 0.52 11.76 7.13 -10.99 -0.08 11.68 16 13 O -0.53 -14.25 15.12 5.56 0.08 -14.17 16 14 N -0.73 -12.36 4.97 -54.36 -0.27 -12.63 16 15 C 0.07 0.99 2.91 -68.50 -0.20 0.79 16 16 H 0.11 1.89 7.57 -51.93 -0.39 1.49 16 17 C 0.06 0.59 6.37 37.34 0.24 0.83 16 18 O -0.37 -3.86 10.53 -35.23 -0.37 -4.23 16 19 C 0.07 0.58 6.85 37.35 0.26 0.83 16 20 C -0.21 -2.27 6.40 -27.30 -0.17 -2.44 16 21 C 0.35 5.34 6.40 -28.24 -0.18 5.16 16 22 O -0.43 -8.46 17.91 6.00 0.11 -8.35 16 23 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 24 H 0.01 0.26 7.56 -51.92 -0.39 -0.13 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 27 H 0.40 5.98 7.91 -40.82 -0.32 5.65 16 28 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 30 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 281.24 15.07 4.24 4.24 Total: -1.00 -33.70 281.24 -5.34 -39.04 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.29 Total: 1.99 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.44 Total: 1.64 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.36 Total: -37.15 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.18 Total: -26.75 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.70 -5.34 -39.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000628875628.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.836 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds