Wall clock time and date at job start Mon Mar 30 2020 03:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 120.00048 * 2 1 4 4 H 1.48499 * 109.46984 * 240.00578 * 3 2 1 5 5 H 1.48504 * 109.47188 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46975 * 120.00095 * 3 2 1 7 7 C 1.37871 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00613 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99895 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47348 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47348 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99580 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00055 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99908 * 179.97438 * 13 11 10 15 15 H 1.08993 * 109.73297 * 324.34874 * 14 13 11 16 16 C 1.53360 * 109.77538 * 203.66218 * 14 13 11 17 17 O 1.42958 * 109.30783 * 292.58992 * 16 14 13 18 18 C 1.42893 * 114.45260 * 295.09978 * 17 16 14 19 19 C 1.53361 * 109.31111 * 64.90417 * 18 17 16 20 20 C 1.51513 * 108.09680 * 307.72431 * 19 18 17 21 21 O 1.20757 * 121.21703 * 228.44180 * 20 19 18 22 22 H 0.97000 * 119.99890 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46977 * 60.00543 * 9 7 2 24 24 H 1.09004 * 109.47280 * 300.00854 * 9 7 2 25 25 H 1.09004 * 109.46970 * 60.00132 * 10 9 7 26 26 H 1.09004 * 109.47295 * 300.00438 * 10 9 7 27 27 H 0.97008 * 119.99925 * 0.02562 * 13 11 10 28 28 H 1.09002 * 109.50226 * 52.52897 * 16 14 13 29 29 H 1.09005 * 109.50531 * 172.60156 * 16 14 13 30 30 H 1.09002 * 109.50560 * 304.94215 * 18 17 16 31 31 H 1.09003 * 109.49964 * 184.86323 * 18 17 16 32 32 H 1.09005 * 109.73742 * 67.37014 * 19 18 17 33 33 H 1.09001 * 109.73961 * 188.02575 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 8 0.2789 -4.9671 -0.0021 13 7 2.1656 -6.1343 -0.0018 14 6 1.4331 -7.4030 -0.0019 15 1 0.5274 -7.3051 0.5965 16 6 2.3186 -8.5135 0.5766 17 8 3.4070 -8.7634 -0.3159 18 6 3.0203 -9.2856 -1.5886 19 6 2.1897 -8.2356 -2.3366 20 6 1.0691 -7.7836 -1.4225 21 8 -0.0727 -7.7291 -1.8119 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6246 -2.5570 0.8896 25 1 2.8719 -3.6043 0.8895 26 1 2.8720 -3.6043 -0.8905 27 1 3.1357 -6.1343 -0.0015 28 1 2.7076 -8.2010 1.5458 29 1 1.7299 -9.4230 0.6969 30 1 2.4244 -10.1871 -1.4462 31 1 3.9111 -9.5261 -2.1691 32 1 2.8194 -7.3843 -2.5956 33 1 1.7722 -8.6739 -3.2430 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000628876705.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:27 Heat of formation + Delta-G solvation = -129.162556 kcal Electronic energy + Delta-G solvation = -17246.496790 eV Core-core repulsion = 14272.122867 eV Total energy + Delta-G solvation = -2974.373923 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.68097 -38.76999 -38.06199 -34.51283 -33.46305 -31.89810 -31.22918 -29.74872 -25.76271 -24.21885 -24.01928 -21.88308 -19.87550 -19.35020 -17.22962 -16.83788 -16.70492 -16.25369 -15.78618 -15.65154 -14.94397 -14.61858 -14.46040 -14.26516 -13.71270 -13.10107 -12.82455 -12.55027 -12.27053 -12.16553 -12.09296 -11.18083 -11.11698 -10.91370 -10.62616 -10.28087 -10.12366 -9.96899 -9.69091 -9.23069 -9.05953 -8.79426 -8.31768 -5.95608 -4.00573 1.68986 3.09677 3.20528 3.34875 3.39550 3.41141 3.56760 3.81531 4.27491 4.46182 4.47947 4.62362 4.75591 4.93940 5.12449 5.21895 5.39162 5.40045 5.42558 5.57741 5.73200 6.18918 6.20485 6.46488 6.67187 6.85772 7.27997 7.73153 7.76759 7.84833 8.06757 8.37434 8.67710 9.07587 9.63064 11.15293 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.044825 B = 0.004666 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.507071 B = 5999.753320 C = 6206.283326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.127 4.127 11 C 0.506 3.494 12 O -0.522 6.522 13 N -0.725 5.725 14 C 0.067 3.933 15 H 0.116 0.884 16 C 0.058 3.942 17 O -0.374 6.374 18 C 0.068 3.932 19 C -0.206 4.206 20 C 0.345 3.655 21 O -0.429 6.429 22 H 0.262 0.738 23 H 0.023 0.977 24 H 0.024 0.976 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.406 0.594 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.126 -19.757 -1.025 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.167 4.167 11 C 0.294 3.706 12 O -0.396 6.396 13 N -0.383 5.383 14 C -0.040 4.040 15 H 0.134 0.866 16 C -0.020 4.020 17 O -0.292 6.292 18 C -0.009 4.009 19 C -0.244 4.244 20 C 0.215 3.785 21 O -0.298 6.298 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.242 0.758 28 H 0.134 0.866 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.604 -19.556 -1.193 21.017 hybrid contribution 0.655 0.898 -0.157 1.123 sum 8.259 -18.658 -1.349 20.449 Atomic orbital electron populations 1.69993 1.06079 1.26733 1.49996 1.25025 0.94818 0.99238 0.95255 0.86641 0.79531 0.83142 0.78542 1.20247 1.21280 1.20227 1.21167 0.92892 0.90958 1.51661 0.92598 1.18914 0.93175 0.89362 0.98684 1.21874 1.00723 0.91368 1.02713 1.21823 0.88854 0.85646 0.74262 1.90724 1.14382 1.87286 1.47170 1.46082 1.10282 1.03718 1.78260 1.22278 0.98935 0.86858 0.95915 0.86612 1.23033 0.88789 0.96094 0.94049 1.87961 1.31772 1.84512 1.24926 1.22642 0.99775 0.94246 0.84262 1.23036 0.98832 1.02364 1.00134 1.25316 0.89315 0.72902 0.90940 1.90447 1.23434 1.39118 1.76789 0.92865 0.95844 0.95765 0.89905 0.90093 0.75806 0.86640 0.91068 0.92411 0.87440 0.87210 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -15.02 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.55 5.64 -27.88 -0.16 -2.70 16 11 C 0.51 9.70 7.79 -10.99 -0.09 9.61 16 12 O -0.52 -12.61 15.66 5.56 0.09 -12.53 16 13 N -0.73 -9.85 5.09 -54.36 -0.28 -10.13 16 14 C 0.07 0.83 2.90 -68.50 -0.20 0.64 16 15 H 0.12 1.66 7.61 -51.93 -0.40 1.27 16 16 C 0.06 0.47 6.36 37.34 0.24 0.71 16 17 O -0.37 -3.11 10.55 -35.23 -0.37 -3.48 16 18 C 0.07 0.46 6.85 37.34 0.26 0.71 16 19 C -0.21 -1.89 6.40 -27.30 -0.17 -2.07 16 20 C 0.34 4.67 6.39 -28.23 -0.18 4.49 16 21 O -0.43 -7.72 17.91 6.00 0.11 -7.61 16 22 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 23 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 24 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 26 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 27 H 0.41 4.31 8.49 -40.82 -0.35 3.96 16 28 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 30 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 31 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 287.98 15.07 4.34 4.34 Total: -1.00 -36.55 287.98 -5.74 -42.28 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -4.51 Total: -1.16 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -0.83 Total: -1.48 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.46 Total: -37.06 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.18 Total: -23.62 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -36.55 -5.74 -42.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000628876705.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.880 kcal (2) G-P(sol) polarization free energy of solvation -36.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds