Wall clock time and date at job start Mon Mar 30 2020 03:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 120.00048 * 2 1 4 4 H 1.48499 * 109.46984 * 240.00578 * 3 2 1 5 5 H 1.48504 * 109.47188 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46975 * 120.00095 * 3 2 1 7 7 C 1.37871 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00613 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99895 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47348 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47348 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99580 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00055 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99908 * 179.97438 * 13 11 10 15 15 H 1.08993 * 109.73297 * 324.34874 * 14 13 11 16 16 C 1.53360 * 109.77538 * 203.66218 * 14 13 11 17 17 O 1.42958 * 109.30783 * 292.58992 * 16 14 13 18 18 C 1.42893 * 114.45260 * 295.09978 * 17 16 14 19 19 C 1.53361 * 109.31111 * 64.90417 * 18 17 16 20 20 C 1.51513 * 108.09680 * 307.72431 * 19 18 17 21 21 O 1.20757 * 121.21703 * 228.44180 * 20 19 18 22 22 H 0.97000 * 119.99890 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46977 * 60.00543 * 9 7 2 24 24 H 1.09004 * 109.47280 * 300.00854 * 9 7 2 25 25 H 1.09004 * 109.46970 * 60.00132 * 10 9 7 26 26 H 1.09004 * 109.47295 * 300.00438 * 10 9 7 27 27 H 0.97008 * 119.99925 * 0.02562 * 13 11 10 28 28 H 1.09002 * 109.50226 * 52.52897 * 16 14 13 29 29 H 1.09005 * 109.50531 * 172.60156 * 16 14 13 30 30 H 1.09002 * 109.50560 * 304.94215 * 18 17 16 31 31 H 1.09003 * 109.49964 * 184.86323 * 18 17 16 32 32 H 1.09005 * 109.73742 * 67.37014 * 19 18 17 33 33 H 1.09001 * 109.73961 * 188.02575 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 8 0.2789 -4.9671 -0.0021 13 7 2.1656 -6.1343 -0.0018 14 6 1.4331 -7.4030 -0.0019 15 1 0.5274 -7.3051 0.5965 16 6 2.3186 -8.5135 0.5766 17 8 3.4070 -8.7634 -0.3159 18 6 3.0203 -9.2856 -1.5886 19 6 2.1897 -8.2356 -2.3366 20 6 1.0691 -7.7836 -1.4225 21 8 -0.0727 -7.7291 -1.8119 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6246 -2.5570 0.8896 25 1 2.8719 -3.6043 0.8895 26 1 2.8720 -3.6043 -0.8905 27 1 3.1357 -6.1343 -0.0015 28 1 2.7076 -8.2010 1.5458 29 1 1.7299 -9.4230 0.6969 30 1 2.4244 -10.1871 -1.4462 31 1 3.9111 -9.5261 -2.1691 32 1 2.8194 -7.3843 -2.5956 33 1 1.7722 -8.6739 -3.2430 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000628876705.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:27 Heat of formation + Delta-G solvation = -158.340103 kcal Electronic energy + Delta-G solvation = -17247.762023 eV Core-core repulsion = 14272.122867 eV Total energy + Delta-G solvation = -2975.639157 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.75256 -40.23631 -38.96803 -35.83193 -35.52691 -33.12953 -32.63625 -30.98856 -27.67193 -25.07200 -24.87449 -23.72191 -21.44464 -20.39748 -18.91469 -17.97321 -17.63097 -17.49483 -17.21781 -16.73940 -16.46684 -16.07239 -15.79590 -15.29435 -15.07828 -14.47933 -14.23082 -14.10065 -13.56992 -13.30117 -13.25980 -12.86272 -12.77262 -12.50961 -11.93075 -11.76797 -11.65902 -11.35691 -11.33578 -11.01810 -10.73325 -10.56604 -9.99410 -8.18225 -6.33030 0.59835 1.42490 1.47312 1.55042 1.58262 2.12661 2.43932 2.72872 2.92183 3.14901 3.46618 3.62428 3.94027 3.98272 4.16109 4.30842 4.37159 4.50851 4.53881 4.62222 4.74589 4.88536 4.92345 5.04586 5.24926 5.48907 5.60261 5.83932 6.04669 6.15883 6.22861 6.50607 6.85477 7.24218 7.37779 8.94448 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.044825 B = 0.004666 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.507071 B = 5999.753320 C = 6206.283326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.008 4.008 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.040 3.960 10 C -0.116 4.116 11 C 0.507 3.493 12 O -0.584 6.584 13 N -0.696 5.696 14 C 0.059 3.941 15 H 0.089 0.911 16 C 0.070 3.930 17 O -0.375 6.375 18 C 0.069 3.931 19 C -0.199 4.199 20 C 0.339 3.661 21 O -0.486 6.486 22 H 0.262 0.738 23 H -0.023 1.023 24 H -0.018 1.018 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.426 0.574 28 H 0.134 0.866 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.138 0.862 32 H 0.117 0.883 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.860 -20.731 -1.004 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.098 0.902 9 C 0.002 3.998 10 C -0.155 4.155 11 C 0.296 3.704 12 O -0.462 6.462 13 N -0.354 5.354 14 C -0.048 4.048 15 H 0.107 0.893 16 C -0.008 4.008 17 O -0.293 6.293 18 C -0.007 4.007 19 C -0.237 4.237 20 C 0.213 3.787 21 O -0.359 6.359 22 H 0.071 0.929 23 H -0.005 1.005 24 H 0.000 1.000 25 H 0.131 0.869 26 H 0.126 0.874 27 H 0.266 0.734 28 H 0.152 0.848 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.135 0.865 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.440 -20.587 -1.165 23.581 hybrid contribution -0.519 1.121 -0.177 1.248 sum 10.921 -19.466 -1.342 22.361 Atomic orbital electron populations 1.70189 1.08466 1.27891 1.51464 1.26174 0.95685 1.04100 0.94565 0.85342 0.77998 0.77138 0.79566 1.18632 1.21503 1.18470 1.21686 0.94102 0.91426 1.50877 0.90246 1.18709 0.93772 0.92740 0.94534 1.21643 0.99212 0.89262 1.05396 1.21633 0.87908 0.87008 0.73812 1.90716 1.16965 1.88187 1.50361 1.45659 1.11090 1.02762 1.75864 1.22503 0.99114 0.87413 0.95786 0.89315 1.23069 0.88402 0.94989 0.94308 1.87976 1.31515 1.84442 1.25398 1.22861 1.00823 0.93460 0.83579 1.23097 0.97304 1.03440 0.99821 1.26064 0.89560 0.71191 0.91849 1.90433 1.25973 1.41758 1.77724 0.92892 1.00459 0.99956 0.86887 0.87431 0.73426 0.84773 0.88864 0.90928 0.84463 0.86541 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.56 13.29 21.45 0.28 -60.27 16 2 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 3 Si 0.98 44.37 29.54 68.60 2.03 46.40 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.54 -30.96 9.11 25.60 0.23 -30.73 16 8 H 0.08 4.06 7.74 -2.91 -0.02 4.03 16 9 C 0.04 2.26 4.26 29.85 0.13 2.39 16 10 C -0.12 -4.57 5.64 29.85 0.17 -4.40 16 11 C 0.51 19.72 7.79 87.66 0.68 20.40 16 12 O -0.58 -29.92 15.66 -3.03 -0.05 -29.97 16 13 N -0.70 -18.00 5.09 -444.29 -2.26 -20.26 16 14 C 0.06 1.42 2.90 44.63 0.13 1.54 16 15 H 0.09 2.66 7.61 -2.39 -0.02 2.65 16 16 C 0.07 0.92 6.36 72.10 0.46 1.38 16 17 O -0.38 -4.67 10.55 -148.98 -1.57 -6.25 16 18 C 0.07 0.66 6.85 72.10 0.49 1.15 16 19 C -0.20 -3.20 6.40 30.23 0.19 -3.00 16 20 C 0.34 9.09 6.39 29.62 0.19 9.28 16 21 O -0.49 -18.29 17.91 -1.44 -0.03 -18.32 16 22 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 23 H -0.02 -1.49 8.10 -2.39 -0.02 -1.51 16 24 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 25 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 26 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 27 H 0.43 7.69 8.49 -92.70 -0.79 6.90 16 28 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 0.90 8.13 -2.38 -0.02 0.88 16 30 H 0.07 0.53 8.13 -2.39 -0.02 0.51 16 31 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -85.78 287.98 1.87 -83.91 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 0.33 Total: 6.75 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 3.14 Total: -1.99 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -1.97 Total: -80.53 kcal Atomic # 8 Polarization: -52.89 SS G_CDS: -1.65 Total: -54.54 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -85.78 1.87 -83.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000628876705.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.435 kcal (2) G-P(sol) polarization free energy of solvation -85.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds