Wall clock time and date at job start Mon Mar 30 2020 03:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99689 * 2 1 4 4 H 1.48500 * 109.47213 * 269.99558 * 3 2 1 5 5 H 1.48497 * 109.47216 * 29.99453 * 3 2 1 6 6 H 1.48504 * 109.47159 * 149.99899 * 3 2 1 7 7 C 1.37869 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00285 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00278 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 H 1.09006 * 109.73073 * 34.34947 * 14 13 11 16 16 C 1.53366 * 109.74065 * 155.00120 * 14 13 11 17 17 O 1.42897 * 109.27248 * 67.39554 * 16 14 13 18 18 C 1.42885 * 114.49608 * 64.93465 * 17 16 14 19 19 C 1.53357 * 109.28198 * 295.06262 * 18 17 16 20 20 C 1.51509 * 109.74017 * 273.64685 * 14 13 11 21 21 O 1.20755 * 121.21686 * 108.74491 * 20 14 13 22 22 H 0.96998 * 120.00586 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46801 * 59.99998 * 9 7 2 24 24 H 1.09000 * 109.47461 * 300.00530 * 9 7 2 25 25 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 26 26 H 1.08994 * 109.47405 * 300.00031 * 10 9 7 27 27 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 28 28 H 1.09001 * 109.50226 * 187.33608 * 16 14 13 29 29 H 1.08998 * 109.49979 * 307.41720 * 16 14 13 30 30 H 1.09000 * 109.50496 * 55.00795 * 18 17 16 31 31 H 1.09004 * 109.49938 * 175.08412 * 18 17 16 32 32 H 1.09001 * 109.74380 * 171.90651 * 19 18 17 33 33 H 1.08999 * 109.74080 * 292.56705 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0023 11 6 5.5286 -2.6364 0.0022 12 8 6.1350 -1.5860 0.0018 13 7 6.2025 -3.8035 0.0088 14 6 7.6675 -3.8035 0.0148 15 1 8.0331 -2.9545 0.5925 16 6 8.1830 -5.1098 0.6312 17 8 7.8579 -6.1999 -0.2336 18 6 8.5088 -6.1621 -1.5050 19 6 8.0189 -4.9382 -2.2885 20 6 8.1851 -3.7174 -1.4065 21 8 8.7105 -2.7125 -1.8214 22 1 -0.4851 0.8400 -0.0004 23 1 3.8745 -0.6799 0.8912 24 1 3.8753 -0.6803 -0.8888 25 1 3.6586 -3.1509 -0.8875 26 1 3.6580 -3.1497 0.8924 27 1 5.7176 -4.6436 0.0094 28 1 9.2646 -5.0524 0.7537 29 1 7.7143 -5.2633 1.6032 30 1 9.5870 -6.0937 -1.3599 31 1 8.2734 -7.0693 -2.0615 32 1 8.6117 -4.8203 -3.1956 33 1 6.9682 -5.0644 -2.5492 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000628876706.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:29 Heat of formation + Delta-G solvation = -126.576819 kcal Electronic energy + Delta-G solvation = -17302.887168 eV Core-core repulsion = 14328.625370 eV Total energy + Delta-G solvation = -2974.261798 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.76628 -38.91114 -38.13370 -34.62421 -33.50693 -31.95751 -31.45659 -29.97275 -26.14016 -24.27451 -24.07445 -21.62787 -19.87252 -19.44044 -17.47152 -16.92123 -16.84111 -16.34016 -16.07538 -15.73702 -15.04308 -14.75786 -14.37900 -14.08478 -13.85185 -13.14836 -12.91045 -12.68784 -12.57923 -12.37746 -12.20766 -11.43578 -11.16989 -10.97851 -10.36834 -10.23678 -10.15535 -10.06807 -9.79392 -9.32819 -9.19047 -8.89509 -8.51131 -6.03580 -4.02586 1.60338 2.95644 3.12838 3.38346 3.44844 3.48577 3.56027 3.73789 4.20988 4.39979 4.50866 4.56404 4.70128 4.88246 5.05688 5.16831 5.31495 5.31983 5.36361 5.48468 5.63715 6.03219 6.05330 6.35330 6.62127 6.65123 7.19229 7.34594 7.41134 7.63206 7.77598 8.46365 8.55660 8.99089 9.59500 11.09165 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.042400 B = 0.005100 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.223985 B = 5489.040784 C = 5752.632498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.119 4.119 11 C 0.506 3.494 12 O -0.528 6.528 13 N -0.723 5.723 14 C 0.066 3.934 15 H 0.117 0.883 16 C 0.058 3.942 17 O -0.373 6.373 18 C 0.068 3.932 19 C -0.206 4.206 20 C 0.345 3.655 21 O -0.430 6.430 22 H 0.263 0.737 23 H 0.024 0.976 24 H 0.019 0.981 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.408 0.592 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.058 0.942 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.494 -15.390 -0.851 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.159 4.159 11 C 0.295 3.705 12 O -0.403 6.403 13 N -0.381 5.381 14 C -0.041 4.041 15 H 0.135 0.865 16 C -0.020 4.020 17 O -0.291 6.291 18 C -0.009 4.009 19 C -0.244 4.244 20 C 0.216 3.784 21 O -0.299 6.299 22 H 0.073 0.927 23 H 0.042 0.958 24 H 0.037 0.963 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.244 0.756 28 H 0.090 0.910 29 H 0.134 0.866 30 H 0.076 0.924 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 17.945 -14.069 -1.024 22.826 hybrid contribution 0.250 0.681 -0.196 0.752 sum 18.196 -13.388 -1.220 22.623 Atomic orbital electron populations 1.69908 1.06282 1.26999 1.51007 1.24956 0.94695 0.99202 0.94279 0.86810 0.80616 0.83428 0.78792 1.20239 1.21389 1.18551 1.21092 0.89176 0.94602 1.51452 0.90862 1.19387 0.96516 0.90102 0.97731 1.21674 0.87186 1.03450 1.03591 1.21797 0.91850 0.82691 0.74142 1.90706 1.70572 1.31298 1.47695 1.46028 1.04017 1.10109 1.77937 1.22305 0.84265 1.01673 0.95835 0.86512 1.23029 1.00556 0.83984 0.94408 1.87951 1.69550 1.45486 1.26127 1.22649 0.96508 0.97739 0.84049 1.23042 1.05638 0.95465 1.00246 1.25321 0.74598 0.87790 0.90704 1.90444 1.31841 1.32304 1.75320 0.92691 0.95760 0.96295 0.89458 0.89223 0.75602 0.91048 0.86576 0.92388 0.87355 0.88303 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 22.81 27.47 -169.99 -4.67 18.15 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 6 H -0.26 -6.79 6.54 56.52 0.37 -6.42 16 7 C -0.53 -15.03 9.66 -34.44 -0.33 -15.37 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.00 0.01 3.33 -27.89 -0.09 -0.08 16 10 C -0.12 -2.27 5.64 -27.88 -0.16 -2.43 16 11 C 0.51 9.12 7.81 -10.98 -0.09 9.04 16 12 O -0.53 -11.93 15.64 5.55 0.09 -11.84 16 13 N -0.72 -9.25 5.07 -54.35 -0.28 -9.52 16 14 C 0.07 0.77 2.92 -68.50 -0.20 0.57 16 15 H 0.12 1.58 7.57 -51.93 -0.39 1.19 16 16 C 0.06 0.44 6.37 37.35 0.24 0.68 16 17 O -0.37 -2.94 10.53 -35.23 -0.37 -3.31 16 18 C 0.07 0.43 6.85 37.34 0.26 0.68 16 19 C -0.21 -1.77 6.40 -27.30 -0.17 -1.94 16 20 C 0.35 4.41 6.40 -28.24 -0.18 4.23 16 21 O -0.43 -7.37 17.91 6.00 0.11 -7.26 16 22 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 23 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 24 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 25 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 26 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 27 H 0.41 4.06 8.49 -40.82 -0.35 3.71 16 28 H 0.07 0.43 8.13 -51.93 -0.42 0.00 16 29 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.31 8.13 -51.93 -0.42 -0.12 16 31 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 284.34 15.07 4.28 4.28 Total: -1.00 -36.44 284.34 -5.36 -41.80 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -4.47 Total: -2.37 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.83 Total: -2.63 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.50 Total: -36.80 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.18 Total: -22.42 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.15 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -36.44 -5.36 -41.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000628876706.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.779 kcal (2) G-P(sol) polarization free energy of solvation -36.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds