Wall clock time and date at job start Mon Mar 30 2020 03:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99689 * 2 1 4 4 H 1.48500 * 109.47213 * 269.99558 * 3 2 1 5 5 H 1.48497 * 109.47216 * 29.99453 * 3 2 1 6 6 H 1.48504 * 109.47159 * 149.99899 * 3 2 1 7 7 C 1.37869 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00285 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00278 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 H 1.09006 * 109.73073 * 34.34947 * 14 13 11 16 16 C 1.53366 * 109.74065 * 155.00120 * 14 13 11 17 17 O 1.42897 * 109.27248 * 67.39554 * 16 14 13 18 18 C 1.42885 * 114.49608 * 64.93465 * 17 16 14 19 19 C 1.53357 * 109.28198 * 295.06262 * 18 17 16 20 20 C 1.51509 * 109.74017 * 273.64685 * 14 13 11 21 21 O 1.20755 * 121.21686 * 108.74491 * 20 14 13 22 22 H 0.96998 * 120.00586 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46801 * 59.99998 * 9 7 2 24 24 H 1.09000 * 109.47461 * 300.00530 * 9 7 2 25 25 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 26 26 H 1.08994 * 109.47405 * 300.00031 * 10 9 7 27 27 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 28 28 H 1.09001 * 109.50226 * 187.33608 * 16 14 13 29 29 H 1.08998 * 109.49979 * 307.41720 * 16 14 13 30 30 H 1.09000 * 109.50496 * 55.00795 * 18 17 16 31 31 H 1.09004 * 109.49938 * 175.08412 * 18 17 16 32 32 H 1.09001 * 109.74380 * 171.90651 * 19 18 17 33 33 H 1.08999 * 109.74080 * 292.56705 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0023 11 6 5.5286 -2.6364 0.0022 12 8 6.1350 -1.5860 0.0018 13 7 6.2025 -3.8035 0.0088 14 6 7.6675 -3.8035 0.0148 15 1 8.0331 -2.9545 0.5925 16 6 8.1830 -5.1098 0.6312 17 8 7.8579 -6.1999 -0.2336 18 6 8.5088 -6.1621 -1.5050 19 6 8.0189 -4.9382 -2.2885 20 6 8.1851 -3.7174 -1.4065 21 8 8.7105 -2.7125 -1.8214 22 1 -0.4851 0.8400 -0.0004 23 1 3.8745 -0.6799 0.8912 24 1 3.8753 -0.6803 -0.8888 25 1 3.6586 -3.1509 -0.8875 26 1 3.6580 -3.1497 0.8924 27 1 5.7176 -4.6436 0.0094 28 1 9.2646 -5.0524 0.7537 29 1 7.7143 -5.2633 1.6032 30 1 9.5870 -6.0937 -1.3599 31 1 8.2734 -7.0693 -2.0615 32 1 8.6117 -4.8203 -3.1956 33 1 6.9682 -5.0644 -2.5492 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000628876706.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:28 Heat of formation + Delta-G solvation = -155.396107 kcal Electronic energy + Delta-G solvation = -17304.136866 eV Core-core repulsion = 14328.625370 eV Total energy + Delta-G solvation = -2975.511496 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.76341 -40.26348 -38.97473 -35.84543 -35.51867 -33.40219 -32.63827 -31.11266 -27.94075 -25.02249 -24.87383 -23.38303 -21.41844 -20.40345 -19.28968 -18.05137 -17.63292 -17.58467 -17.22964 -16.75800 -16.28633 -16.11774 -15.77469 -15.35198 -15.11078 -14.68887 -14.41997 -14.27649 -13.57543 -13.44263 -13.29429 -12.95025 -12.85458 -12.14110 -11.99755 -11.80285 -11.76422 -11.42142 -11.35916 -11.03480 -10.79695 -10.76137 -10.00266 -8.33139 -6.35632 0.58967 1.30597 1.32996 1.47706 1.54870 2.11455 2.32897 2.72491 2.91785 3.02699 3.46233 3.62173 3.92314 3.94153 4.15750 4.30865 4.32903 4.42701 4.47261 4.61994 4.74418 4.88469 4.91708 4.97353 5.20472 5.35173 5.41363 5.59215 6.05283 6.20650 6.22703 6.47551 6.70809 7.19403 7.29963 8.82440 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.042400 B = 0.005100 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.223985 B = 5489.040784 C = 5752.632498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.017 3.983 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.003 3.997 10 C -0.113 4.113 11 C 0.511 3.489 12 O -0.581 6.581 13 N -0.697 5.697 14 C 0.059 3.941 15 H 0.093 0.907 16 C 0.068 3.932 17 O -0.377 6.377 18 C 0.069 3.931 19 C -0.200 4.200 20 C 0.341 3.659 21 O -0.484 6.484 22 H 0.268 0.732 23 H 0.010 0.990 24 H 0.003 0.997 25 H 0.106 0.894 26 H 0.112 0.888 27 H 0.426 0.574 28 H 0.093 0.907 29 H 0.134 0.866 30 H 0.072 0.928 31 H 0.136 0.864 32 H 0.107 0.893 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.758 -17.445 -0.805 25.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.181 4.181 3 Si 0.759 3.241 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.035 4.035 10 C -0.153 4.153 11 C 0.300 3.700 12 O -0.460 6.460 13 N -0.354 5.354 14 C -0.048 4.048 15 H 0.111 0.889 16 C -0.009 4.009 17 O -0.295 6.295 18 C -0.008 4.008 19 C -0.238 4.238 20 C 0.215 3.785 21 O -0.357 6.357 22 H 0.077 0.923 23 H 0.028 0.972 24 H 0.022 0.978 25 H 0.124 0.876 26 H 0.130 0.870 27 H 0.265 0.735 28 H 0.111 0.889 29 H 0.151 0.849 30 H 0.091 0.909 31 H 0.154 0.846 32 H 0.126 0.874 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 19.207 -16.212 -0.972 25.153 hybrid contribution -0.148 1.215 -0.223 1.245 sum 19.060 -14.996 -1.195 24.281 Atomic orbital electron populations 1.70008 1.07645 1.28075 1.52487 1.25735 0.95431 1.02587 0.94329 0.85901 0.79245 0.79970 0.79008 1.19687 1.20118 1.18867 1.21409 0.91038 0.93847 1.50236 0.92699 1.19242 0.94168 0.93896 0.96207 1.21501 0.88263 0.99885 1.05628 1.21490 0.91417 0.83271 0.73830 1.90697 1.71310 1.33430 1.50526 1.45663 1.04828 1.09252 1.75698 1.22515 0.82930 1.03559 0.95775 0.88853 1.23073 1.01806 0.81497 0.94540 1.87965 1.69952 1.44916 1.26634 1.22859 0.97234 0.97402 0.83294 1.23098 1.06290 0.94244 1.00118 1.26015 0.72813 0.88207 0.91451 1.90431 1.34511 1.34537 1.76233 0.92337 0.97180 0.97832 0.87591 0.87039 0.73477 0.88883 0.84868 0.90931 0.84616 0.87449 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.97 13.96 21.44 0.30 -58.67 16 2 C 0.02 1.02 5.47 84.65 0.46 1.48 16 3 Si 0.93 47.44 27.47 68.60 1.88 49.32 16 4 H -0.27 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 6 H -0.26 -13.45 6.54 99.48 0.65 -12.80 16 7 C -0.53 -30.36 9.66 25.60 0.25 -30.11 16 8 H 0.05 3.29 7.99 -2.91 -0.02 3.26 16 9 C 0.00 0.14 3.33 29.85 0.10 0.24 16 10 C -0.11 -4.17 5.64 29.85 0.17 -4.01 16 11 C 0.51 18.01 7.81 87.66 0.68 18.69 16 12 O -0.58 -26.58 15.64 -3.04 -0.05 -26.63 16 13 N -0.70 -16.51 5.07 -444.27 -2.25 -18.76 16 14 C 0.06 1.29 2.92 44.63 0.13 1.42 16 15 H 0.09 2.54 7.57 -2.38 -0.02 2.52 16 16 C 0.07 0.81 6.37 72.10 0.46 1.27 16 17 O -0.38 -4.39 10.53 -148.98 -1.57 -5.96 16 18 C 0.07 0.59 6.85 72.10 0.49 1.09 16 19 C -0.20 -2.92 6.40 30.23 0.19 -2.72 16 20 C 0.34 8.37 6.40 29.62 0.19 8.56 16 21 O -0.48 -16.89 17.91 -1.44 -0.03 -16.92 16 22 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 23 H 0.01 0.52 7.16 -2.38 -0.02 0.50 16 24 H 0.00 0.17 7.53 -2.39 -0.02 0.16 16 25 H 0.11 3.51 8.14 -2.38 -0.02 3.49 16 26 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 27 H 0.43 7.13 8.49 -92.71 -0.79 6.34 16 28 H 0.09 0.78 8.13 -2.39 -0.02 0.76 16 29 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 0.47 8.13 -2.39 -0.02 0.45 16 31 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -80.97 284.34 1.69 -79.28 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 0.28 Total: 2.42 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 3.13 Total: -4.08 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -1.95 Total: -77.43 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -1.64 Total: -49.51 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.88 Total: 49.32 kcal Total: -80.97 1.69 -79.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000628876706.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.118 kcal (2) G-P(sol) polarization free energy of solvation -80.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds