Wall clock time and date at job start Mon Mar 30 2020 04:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47224 * 2 1 4 4 N 1.46497 * 109.46957 * 185.13626 * 3 2 1 5 5 C 1.36944 * 119.99976 * 84.80438 * 4 3 2 6 6 H 1.07995 * 119.99803 * 318.52927 * 5 4 3 7 7 C 1.38814 * 119.99906 * 138.53631 * 5 4 3 8 8 N 1.31614 * 119.99815 * 162.36793 * 7 5 4 9 9 Si 1.86800 * 120.00006 * 342.36499 * 7 5 4 10 10 H 1.48494 * 109.46992 * 95.27133 * 9 7 5 11 11 H 1.48495 * 109.47002 * 215.27473 * 9 7 5 12 12 H 1.48500 * 109.46916 * 335.27103 * 9 7 5 13 13 C 1.46498 * 120.00300 * 264.80487 * 4 3 2 14 14 C 1.50696 * 109.47240 * 89.99670 * 13 4 3 15 15 O 1.35556 * 125.90903 * 269.69280 * 14 13 4 16 16 C 1.34272 * 107.92269 * 179.87136 * 15 14 13 17 17 O 1.21588 * 126.10623 * 180.11092 * 16 15 14 18 18 O 1.34267 * 107.77942 * 0.39307 * 16 15 14 19 19 C 1.32339 * 125.90662 * 90.00343 * 14 13 4 20 20 C 1.50698 * 125.90825 * 0.02562 * 19 14 13 21 21 H 1.09006 * 109.46800 * 64.89414 * 1 2 3 22 22 H 1.08997 * 109.47030 * 184.89047 * 1 2 3 23 23 H 1.09001 * 109.47202 * 304.89578 * 1 2 3 24 24 H 1.08999 * 109.47246 * 239.99359 * 2 1 3 25 25 H 1.09001 * 109.46680 * 119.99745 * 2 1 3 26 26 H 1.08999 * 109.47472 * 65.13463 * 3 2 1 27 27 H 1.09001 * 109.46953 * 305.13389 * 3 2 1 28 28 H 0.96999 * 120.00312 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.47307 * 210.00655 * 13 4 3 30 30 H 1.09008 * 109.46525 * 329.99958 * 13 4 3 31 31 H 1.08999 * 109.47616 * 89.99947 * 20 19 14 32 32 H 1.09000 * 109.47494 * 210.00112 * 20 19 14 33 33 H 1.09005 * 109.47063 * 329.99520 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4998 1.4443 -0.1237 5 6 4.0822 1.3730 -1.3610 6 1 3.6816 0.7046 -2.1087 7 6 5.1877 2.1597 -1.6541 8 7 5.9543 1.8609 -2.6813 9 14 5.5872 3.6426 -0.5906 10 1 6.5847 3.2582 0.4401 11 1 6.1452 4.7251 -1.4402 12 1 4.3490 4.1232 0.0736 13 6 4.3365 1.5223 1.0763 14 6 4.6324 0.1309 1.5738 15 8 3.8905 -0.5686 2.4669 16 6 4.4788 -1.7619 2.6482 17 8 4.0874 -2.6498 3.3808 18 8 5.5798 -1.7970 1.8805 19 6 5.6647 -0.6172 1.2185 20 6 6.7478 -0.2248 0.2471 21 1 -0.3633 0.4361 -0.9306 22 1 -0.3633 -1.0239 0.0876 23 1 -0.3634 0.5879 0.8429 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.7538 1.9291 0.9324 27 1 1.6036 1.9822 -0.8404 28 1 6.7266 2.4108 -2.8864 29 1 5.2712 2.0285 0.8353 30 1 3.8102 2.0807 1.8505 31 1 7.5600 0.2630 0.7860 32 1 7.1274 -1.1157 -0.2533 33 1 6.3395 0.4621 -0.4943 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685977317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:39 Heat of formation + Delta-G solvation = -68.125618 kcal Electronic energy + Delta-G solvation = -18354.571007 eV Core-core repulsion = 15382.843844 eV Total energy + Delta-G solvation = -2971.727163 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.56236 -37.82710 -37.35074 -36.62551 -33.44835 -32.19359 -31.28228 -28.11841 -26.05783 -25.11402 -23.48190 -22.55095 -21.61857 -20.38592 -17.80246 -17.54994 -16.74350 -16.17762 -15.69252 -14.99114 -14.70554 -14.10087 -13.72735 -13.62981 -13.24902 -13.05710 -12.97147 -12.64771 -12.26467 -12.02806 -11.94874 -11.71845 -11.23126 -11.15523 -10.96451 -10.81957 -10.66186 -10.36213 -10.03227 -9.84807 -8.79333 -8.11879 -7.13187 -6.28162 -3.79324 2.04712 2.33481 2.70778 3.04355 3.11764 3.28158 3.30413 4.21072 4.76193 4.94960 5.12368 5.14005 5.48481 5.55954 5.63277 5.84543 5.87900 5.93475 5.99566 6.02095 6.08361 6.25266 6.33737 6.42192 6.45859 6.76073 6.76631 6.96384 7.45444 7.60748 7.76236 8.14861 8.65951 9.36134 9.77845 10.84619 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.019204 B = 0.011731 C = 0.008507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.691810 B = 2386.323475 C = 3290.743927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.590 5.590 5 C -0.275 4.275 6 H 0.084 0.916 7 C 0.042 3.958 8 N -0.887 5.887 9 Si 0.863 3.137 10 H -0.279 1.279 11 H -0.293 1.293 12 H -0.262 1.262 13 C 0.206 3.794 14 C -0.037 4.037 15 O -0.242 6.242 16 C 0.563 3.437 17 O -0.453 6.453 18 O -0.249 6.249 19 C -0.033 4.033 20 C -0.084 4.084 21 H 0.051 0.949 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.958 0.429 5.648 5.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.023 3.977 4 N -0.310 5.310 5 C -0.403 4.403 6 H 0.101 0.899 7 C -0.160 4.160 8 N -0.526 5.526 9 Si 0.692 3.308 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.186 1.186 13 C 0.079 3.921 14 C -0.085 4.085 15 O -0.154 6.154 16 C 0.372 3.628 17 O -0.350 6.350 18 O -0.161 6.161 19 C -0.079 4.079 20 C -0.140 4.140 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.058 0.028 5.888 6.237 hybrid contribution 0.328 0.398 0.600 0.792 sum -1.730 0.426 6.488 6.728 Atomic orbital electron populations 1.21700 0.96814 1.00717 1.01144 1.22052 0.94370 1.00206 1.01857 1.21061 0.83052 0.94048 0.99568 1.44326 1.00698 1.84419 1.01524 1.18821 1.12405 1.19988 0.89133 0.89867 1.25552 0.97374 0.97041 0.96045 1.69822 1.15308 1.38568 1.28932 0.87126 0.78781 0.84809 0.80111 1.20624 1.22020 1.18642 1.20213 0.97629 0.84694 0.89588 1.24573 0.90597 1.00136 0.93182 1.85322 1.49103 1.26276 1.54654 1.21724 0.78033 0.82564 0.80434 1.91215 1.67006 1.37543 1.39241 1.85233 1.42342 1.37392 1.51173 1.22416 1.01871 0.82670 1.00895 1.20697 0.93674 1.03640 0.95989 0.93001 0.93612 0.93291 0.91929 0.92996 0.93944 0.92118 0.92097 0.89288 0.91180 0.90885 0.90475 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.15 -2.54 6.23 -26.73 -0.17 -2.71 16 3 C 0.15 2.71 5.72 -4.04 -0.02 2.69 16 4 N -0.59 -12.40 2.02 -174.62 -0.35 -12.76 16 5 C -0.27 -6.63 9.25 -15.06 -0.14 -6.77 16 6 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 7 C 0.04 1.02 3.44 -17.43 -0.06 0.96 16 8 N -0.89 -23.09 13.88 55.49 0.77 -22.32 16 9 Si 0.86 18.69 24.90 -169.99 -4.23 14.46 16 10 H -0.28 -5.66 6.74 56.52 0.38 -5.28 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 13 C 0.21 4.00 4.57 -5.20 -0.02 3.97 16 14 C -0.04 -0.71 6.86 -36.24 -0.25 -0.96 16 15 O -0.24 -4.71 10.08 -30.60 -0.31 -5.02 16 16 C 0.56 11.23 9.77 101.05 0.99 12.21 16 17 O -0.45 -9.68 18.05 -27.26 -0.49 -10.17 16 18 O -0.25 -4.84 10.81 -30.56 -0.33 -5.17 16 19 C -0.03 -0.63 7.29 -36.23 -0.26 -0.89 16 20 C -0.08 -1.50 9.96 36.00 0.36 -1.14 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 25 H 0.05 0.97 7.38 -51.93 -0.38 0.59 16 26 H 0.04 0.70 7.83 -51.93 -0.41 0.30 16 27 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 28 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.09 1.77 2.94 -51.93 -0.15 1.62 16 30 H 0.07 1.20 7.86 -51.92 -0.41 0.79 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.13 2.76 4.59 -51.93 -0.24 2.52 16 LS Contribution 277.59 15.07 4.18 4.18 Total: -1.00 -26.04 277.59 -4.10 -30.14 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.12 Total: 1.00 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 0.79 Total: 5.66 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.42 Total: -35.08 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -1.13 Total: -20.36 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.23 Total: 14.46 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -26.04 -4.10 -30.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685977317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.986 kcal (2) G-P(sol) polarization free energy of solvation -26.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds