Wall clock time and date at job start Mon Mar 30 2020 04:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47224 * 2 1 4 4 N 1.46497 * 109.46957 * 185.13626 * 3 2 1 5 5 C 1.36944 * 119.99976 * 84.80438 * 4 3 2 6 6 H 1.07995 * 119.99803 * 318.52927 * 5 4 3 7 7 C 1.38814 * 119.99906 * 138.53631 * 5 4 3 8 8 N 1.31614 * 119.99815 * 162.36793 * 7 5 4 9 9 Si 1.86800 * 120.00006 * 342.36499 * 7 5 4 10 10 H 1.48494 * 109.46992 * 95.27133 * 9 7 5 11 11 H 1.48495 * 109.47002 * 215.27473 * 9 7 5 12 12 H 1.48500 * 109.46916 * 335.27103 * 9 7 5 13 13 C 1.46498 * 120.00300 * 264.80487 * 4 3 2 14 14 C 1.50696 * 109.47240 * 89.99670 * 13 4 3 15 15 O 1.35556 * 125.90903 * 269.69280 * 14 13 4 16 16 C 1.34272 * 107.92269 * 179.87136 * 15 14 13 17 17 O 1.21588 * 126.10623 * 180.11092 * 16 15 14 18 18 O 1.34267 * 107.77942 * 0.39307 * 16 15 14 19 19 C 1.32339 * 125.90662 * 90.00343 * 14 13 4 20 20 C 1.50698 * 125.90825 * 0.02562 * 19 14 13 21 21 H 1.09006 * 109.46800 * 64.89414 * 1 2 3 22 22 H 1.08997 * 109.47030 * 184.89047 * 1 2 3 23 23 H 1.09001 * 109.47202 * 304.89578 * 1 2 3 24 24 H 1.08999 * 109.47246 * 239.99359 * 2 1 3 25 25 H 1.09001 * 109.46680 * 119.99745 * 2 1 3 26 26 H 1.08999 * 109.47472 * 65.13463 * 3 2 1 27 27 H 1.09001 * 109.46953 * 305.13389 * 3 2 1 28 28 H 0.96999 * 120.00312 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.47307 * 210.00655 * 13 4 3 30 30 H 1.09008 * 109.46525 * 329.99958 * 13 4 3 31 31 H 1.08999 * 109.47616 * 89.99947 * 20 19 14 32 32 H 1.09000 * 109.47494 * 210.00112 * 20 19 14 33 33 H 1.09005 * 109.47063 * 329.99520 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4998 1.4443 -0.1237 5 6 4.0822 1.3730 -1.3610 6 1 3.6816 0.7046 -2.1087 7 6 5.1877 2.1597 -1.6541 8 7 5.9543 1.8609 -2.6813 9 14 5.5872 3.6426 -0.5906 10 1 6.5847 3.2582 0.4401 11 1 6.1452 4.7251 -1.4402 12 1 4.3490 4.1232 0.0736 13 6 4.3365 1.5223 1.0763 14 6 4.6324 0.1309 1.5738 15 8 3.8905 -0.5686 2.4669 16 6 4.4788 -1.7619 2.6482 17 8 4.0874 -2.6498 3.3808 18 8 5.5798 -1.7970 1.8805 19 6 5.6647 -0.6172 1.2185 20 6 6.7478 -0.2248 0.2471 21 1 -0.3633 0.4361 -0.9306 22 1 -0.3633 -1.0239 0.0876 23 1 -0.3634 0.5879 0.8429 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.7538 1.9291 0.9324 27 1 1.6036 1.9822 -0.8404 28 1 6.7266 2.4108 -2.8864 29 1 5.2712 2.0285 0.8353 30 1 3.8102 2.0807 1.8505 31 1 7.5600 0.2630 0.7860 32 1 7.1274 -1.1157 -0.2533 33 1 6.3395 0.4621 -0.4943 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685977317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:39 Heat of formation + Delta-G solvation = -81.549207 kcal Electronic energy + Delta-G solvation = -18355.153097 eV Core-core repulsion = 15382.843844 eV Total energy + Delta-G solvation = -2972.309254 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.13163 -39.45241 -38.92487 -38.22414 -34.92477 -33.92310 -32.83564 -29.64164 -27.59168 -26.69872 -25.06709 -24.12558 -23.14908 -21.90212 -19.45173 -19.16029 -18.41146 -17.77446 -17.36671 -16.59000 -16.24101 -15.56683 -15.29193 -15.15961 -14.82239 -14.68058 -14.50780 -14.21836 -13.77633 -13.49491 -13.41260 -13.20630 -12.79133 -12.62007 -12.47089 -12.39955 -12.05625 -12.02483 -11.69036 -11.38336 -10.59483 -9.66642 -8.84298 -8.15759 -5.67532 0.51329 0.73484 1.12697 1.35096 1.51935 1.55689 1.64467 2.42155 3.07797 3.30188 3.52594 3.61917 3.98076 4.19707 4.29910 4.36224 4.47495 4.54833 4.59852 4.63304 4.77040 4.79234 4.94423 5.12267 5.23354 5.28204 5.35824 5.54177 5.85966 5.95821 6.04278 6.25493 6.90741 7.53608 7.97842 9.00553 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.019204 B = 0.011731 C = 0.008507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.691810 B = 2386.323475 C = 3290.743927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 C 0.143 3.857 4 N -0.599 5.599 5 C -0.268 4.268 6 H 0.039 0.961 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.912 3.088 10 H -0.253 1.253 11 H -0.307 1.307 12 H -0.251 1.251 13 C 0.204 3.796 14 C -0.042 4.042 15 O -0.238 6.238 16 C 0.565 3.435 17 O -0.469 6.469 18 O -0.248 6.248 19 C -0.033 4.033 20 C -0.083 4.083 21 H 0.058 0.942 22 H 0.052 0.948 23 H 0.066 0.934 24 H 0.032 0.968 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.269 0.731 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.246 1.355 7.331 7.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.177 4.177 3 C 0.019 3.981 4 N -0.320 5.320 5 C -0.397 4.397 6 H 0.057 0.943 7 C -0.190 4.190 8 N -0.569 5.569 9 Si 0.739 3.261 10 H -0.179 1.179 11 H -0.235 1.235 12 H -0.174 1.174 13 C 0.077 3.923 14 C -0.090 4.090 15 O -0.149 6.149 16 C 0.376 3.624 17 O -0.367 6.367 18 O -0.160 6.160 19 C -0.078 4.078 20 C -0.139 4.139 21 H 0.077 0.923 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.105 0.895 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.364 0.947 7.598 8.013 hybrid contribution 0.398 0.032 0.044 0.402 sum -1.966 0.980 7.642 7.951 Atomic orbital electron populations 1.21644 0.94042 1.01690 1.02312 1.21935 0.96778 0.99253 0.99724 1.21213 0.81601 0.94568 1.00739 1.44394 1.01906 1.84647 1.01004 1.18479 1.12336 1.19022 0.89880 0.94280 1.25944 0.97065 0.98900 0.97139 1.69933 1.16152 1.39688 1.31167 0.86320 0.79553 0.81069 0.79149 1.17932 1.23549 1.17435 1.20305 0.97698 0.84799 0.89498 1.24567 0.90715 1.00300 0.93430 1.85307 1.48957 1.26033 1.54601 1.21659 0.78000 0.82497 0.80262 1.91203 1.67436 1.38067 1.39969 1.85234 1.42124 1.37588 1.51057 1.22714 1.02202 0.82317 1.00580 1.20703 0.93968 1.03726 0.95516 0.92319 0.92901 0.91505 0.94867 0.94240 0.91278 0.92447 0.92182 0.89558 0.88204 0.87936 0.89542 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.14 -4.69 6.23 30.60 0.19 -4.50 16 3 C 0.14 5.00 5.72 86.38 0.49 5.50 16 4 N -0.60 -24.45 2.02 -706.36 -1.43 -25.88 16 5 C -0.27 -13.03 9.25 84.03 0.78 -12.25 16 6 H 0.04 2.22 8.06 -2.91 -0.02 2.20 16 7 C 0.01 0.41 3.44 84.86 0.29 0.70 16 8 N -0.93 -49.09 13.88 21.65 0.30 -48.79 16 9 Si 0.91 37.15 24.90 68.60 1.71 38.86 16 10 H -0.25 -9.23 6.74 99.48 0.67 -8.56 16 11 H -0.31 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 13 C 0.20 7.36 4.57 85.63 0.39 7.75 16 14 C -0.04 -1.55 6.86 24.60 0.17 -1.38 16 15 O -0.24 -8.80 10.08 16.28 0.16 -8.63 16 16 C 0.57 21.76 9.77 113.37 1.11 22.87 16 17 O -0.47 -19.46 18.05 27.13 0.49 -18.97 16 18 O -0.25 -9.27 10.81 16.39 0.18 -9.10 16 19 C -0.03 -1.19 7.29 24.60 0.18 -1.01 16 20 C -0.08 -2.83 9.96 71.24 0.71 -2.12 16 21 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 22 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.04 1.43 7.38 -2.39 -0.02 1.41 16 26 H 0.07 2.06 7.83 -2.39 -0.02 2.04 16 27 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 28 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 29 H 0.09 3.18 2.94 -2.39 -0.01 3.17 16 30 H 0.10 3.02 7.86 -2.38 -0.02 3.00 16 31 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.11 4.34 4.59 -2.38 -0.01 4.33 16 Total: -1.00 -55.49 277.59 7.52 -47.97 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 1.08 Total: 11.93 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 5.02 Total: 12.60 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -1.12 Total: -74.67 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: 0.83 Total: -36.70 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 1.71 Total: 38.86 kcal Total: -55.49 7.52 -47.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685977317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.579 kcal (2) G-P(sol) polarization free energy of solvation -55.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds