Wall clock time and date at job start Mon Mar 30 2020 03:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.35553 * 125.90963 * 2 1 4 4 C 1.34273 * 107.92697 * 179.97438 * 3 2 1 5 5 O 1.21578 * 126.10953 * 180.02562 * 4 3 2 6 6 O 1.34276 * 107.77583 * 359.75133 * 4 3 2 7 7 C 1.32343 * 125.90621 * 179.97438 * 2 1 3 8 8 C 1.50693 * 125.90778 * 359.97438 * 7 2 1 9 9 N 1.46501 * 109.47511 * 90.00147 * 8 7 2 10 10 C 1.36933 * 119.99926 * 270.00059 * 9 8 7 11 11 H 1.08000 * 119.99947 * 330.51175 * 10 9 8 12 12 C 1.38820 * 120.00143 * 150.51059 * 10 9 8 13 13 N 1.31619 * 119.99532 * 341.83974 * 12 10 9 14 14 Si 1.86796 * 120.00231 * 161.83918 * 12 10 9 15 15 H 1.48501 * 109.46948 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47041 * 120.00015 * 14 12 10 17 17 H 1.48498 * 109.47193 * 240.00326 * 14 12 10 18 18 C 1.46500 * 120.00149 * 89.99416 * 9 8 7 19 19 C 1.52998 * 109.47308 * 297.83748 * 18 9 8 20 20 C 1.53008 * 109.46853 * 57.83613 * 18 9 8 21 21 H 1.08995 * 109.46515 * 270.02572 * 1 2 3 22 22 H 1.09002 * 109.46999 * 30.02467 * 1 2 3 23 23 H 1.08994 * 109.46750 * 150.02438 * 1 2 3 24 24 H 1.08992 * 109.47460 * 329.99802 * 8 7 2 25 25 H 1.09005 * 109.47461 * 210.00055 * 8 7 2 26 26 H 0.97003 * 119.99800 * 180.02562 * 13 12 10 27 27 H 1.08998 * 109.47049 * 177.83216 * 18 9 8 28 28 H 1.09002 * 109.46950 * 179.97438 * 19 18 9 29 29 H 1.08995 * 109.47198 * 299.99741 * 19 18 9 30 30 H 1.08998 * 109.47501 * 59.99744 * 19 18 9 31 31 H 1.08998 * 109.46969 * 299.99652 * 20 18 9 32 32 H 1.09001 * 109.46982 * 60.00047 * 20 18 9 33 33 H 1.09001 * 109.46736 * 180.02562 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3021 1.0979 0.0000 4 6 3.5792 0.6834 0.0006 5 8 4.5639 1.3964 0.0012 6 8 3.5744 -0.6594 0.0065 7 6 2.2832 -1.0719 0.0005 8 6 1.8128 -2.5036 0.0017 9 7 1.6599 -2.9686 -1.3791 10 6 0.4618 -2.8158 -2.0243 11 1 -0.4592 -2.8170 -1.4603 12 6 0.4311 -2.6594 -3.4033 13 7 1.5206 -2.3021 -4.0495 14 14 -1.1565 -2.9560 -4.3418 15 1 -2.2286 -3.3446 -3.3906 16 1 -1.5518 -1.7129 -5.0514 17 1 -0.9515 -4.0459 -5.3294 18 6 2.7889 -3.5970 -2.0697 19 6 3.9378 -2.5935 -2.1866 20 6 3.2570 -4.8180 -1.2753 21 1 -0.3632 0.0005 1.0277 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3632 -0.8902 -0.5134 24 1 0.8542 -2.5707 0.5159 25 1 2.5452 -3.1263 0.5157 26 1 1.4991 -2.1924 -5.0131 27 1 2.4767 -3.9097 -3.0661 28 1 4.7779 -3.0612 -2.7001 29 1 3.6044 -1.7237 -2.7525 30 1 4.2499 -2.2808 -1.1902 31 1 3.5691 -4.5053 -0.2789 32 1 2.4384 -5.5329 -1.1920 33 1 4.0972 -5.2853 -1.7889 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687722572.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:50 Heat of formation + Delta-G solvation = -66.676785 kcal Electronic energy + Delta-G solvation = -18549.040064 eV Core-core repulsion = 15577.375727 eV Total energy + Delta-G solvation = -2971.664337 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.37963 -37.67926 -37.23635 -36.56977 -32.71843 -32.07609 -30.19227 -27.73929 -26.10300 -25.02389 -23.38093 -23.22661 -21.65086 -19.38865 -17.58494 -17.22165 -16.81205 -15.94806 -15.14072 -14.78327 -14.21201 -13.85559 -13.55461 -13.53310 -13.08999 -12.90428 -12.56023 -12.22216 -11.92061 -11.72677 -11.57767 -11.45257 -11.16218 -11.01982 -10.92269 -10.73448 -10.32786 -10.09209 -9.91701 -9.54781 -8.64762 -7.97298 -6.99927 -6.04262 -3.51629 2.22242 2.50771 2.88794 3.22601 3.32241 3.33348 3.33714 4.28853 5.11251 5.18988 5.25750 5.29831 5.59483 5.84436 5.94600 6.04304 6.14414 6.22983 6.28433 6.35300 6.40020 6.52252 6.65158 6.74542 6.84701 7.02014 7.50940 7.55505 7.64074 7.70523 7.77668 8.21532 8.94553 9.54395 10.07637 11.00652 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.022922 B = 0.010143 C = 0.008534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.232343 B = 2759.829898 C = 3280.196643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.061 4.061 3 O -0.252 6.252 4 C 0.563 3.437 5 O -0.458 6.458 6 O -0.239 6.239 7 C -0.019 4.019 8 C 0.210 3.790 9 N -0.561 5.561 10 C -0.272 4.272 11 H 0.074 0.926 12 C 0.015 3.985 13 N -0.880 5.880 14 Si 0.903 3.097 15 H -0.274 1.274 16 H -0.289 1.289 17 H -0.287 1.287 18 C 0.177 3.823 19 C -0.150 4.150 20 C -0.164 4.164 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.110 0.890 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.258 0.742 27 H 0.101 0.899 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.037 0.963 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 -1.403 6.762 7.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 O -0.165 6.165 4 C 0.373 3.627 5 O -0.355 6.355 6 O -0.150 6.150 7 C -0.068 4.068 8 C 0.081 3.919 9 N -0.279 5.279 10 C -0.401 4.401 11 H 0.091 0.909 12 C -0.187 4.187 13 N -0.521 5.521 14 Si 0.732 3.268 15 H -0.199 1.199 16 H -0.216 1.216 17 H -0.213 1.213 18 C 0.071 3.929 19 C -0.209 4.209 20 C -0.223 4.223 21 H 0.090 0.910 22 H 0.091 0.909 23 H 0.128 0.872 24 H 0.105 0.895 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.118 0.882 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.500 -1.037 6.535 6.785 hybrid contribution -0.437 0.342 -0.837 1.004 sum -1.937 -0.695 5.699 6.059 Atomic orbital electron populations 1.20332 0.83598 1.05590 1.02580 1.22122 0.95272 0.81555 1.11685 1.85178 1.17593 1.34936 1.78766 1.21743 0.83217 0.80964 0.76804 1.91195 1.31927 1.56721 1.55632 1.85382 1.29940 1.21953 1.77699 1.24979 0.77796 1.00901 1.03088 1.19975 0.98925 0.82550 0.90471 1.44474 1.10515 1.62988 1.09929 1.19225 0.84468 1.46482 0.89929 0.90865 1.25188 0.97117 0.98394 0.97979 1.70054 1.27512 1.46277 1.08245 0.86241 0.82902 0.77700 0.80001 1.19884 1.21552 1.21317 1.20434 0.86199 0.89309 0.96926 1.22146 0.97526 1.01418 0.99816 1.22337 0.99906 0.99920 1.00120 0.90966 0.90896 0.87181 0.89510 0.91491 0.93208 0.88171 0.95147 0.91473 0.94412 0.94109 0.93235 0.93838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 9.96 36.01 0.36 -0.60 16 2 C -0.06 -1.12 7.29 -36.23 -0.26 -1.39 16 3 O -0.25 -5.07 10.81 -30.59 -0.33 -5.40 16 4 C 0.56 11.97 9.77 101.05 0.99 12.95 16 5 O -0.46 -10.46 18.05 -27.25 -0.49 -10.95 16 6 O -0.24 -4.94 8.55 -30.59 -0.26 -5.20 16 7 C -0.02 -0.36 6.05 -36.24 -0.22 -0.58 16 8 C 0.21 3.79 5.24 -5.20 -0.03 3.76 16 9 N -0.56 -12.08 2.40 -167.02 -0.40 -12.48 16 10 C -0.27 -6.30 8.47 -15.06 -0.13 -6.43 16 11 H 0.07 1.61 7.32 -52.49 -0.38 1.23 16 12 C 0.01 0.37 4.86 -17.43 -0.08 0.28 16 13 N -0.88 -23.07 10.34 55.49 0.57 -22.50 16 14 Si 0.90 19.53 29.59 -169.99 -5.03 14.50 16 15 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 16 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 18 C 0.18 3.82 2.39 -67.93 -0.16 3.66 16 19 C -0.15 -3.30 8.37 37.16 0.31 -2.99 16 20 C -0.16 -2.93 9.13 37.16 0.34 -2.59 16 21 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.11 1.76 5.86 -51.93 -0.30 1.45 16 24 H 0.09 1.36 7.55 -51.93 -0.39 0.97 16 25 H 0.07 1.12 6.32 -51.93 -0.33 0.79 16 26 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 27 H 0.10 2.47 5.87 -51.93 -0.30 2.17 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.70 7.35 -51.93 -0.38 1.32 16 30 H 0.04 0.80 5.38 -51.93 -0.28 0.52 16 31 H 0.04 0.68 6.59 -51.93 -0.34 0.33 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 273.84 15.07 4.13 4.13 Total: -1.00 -27.45 273.84 -4.67 -32.12 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -3.96 Total: -0.28 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 1.11 Total: 6.08 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.17 Total: -34.98 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -1.08 Total: -21.55 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.45 -4.67 -32.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687722572.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.560 kcal (2) G-P(sol) polarization free energy of solvation -27.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds