Wall clock time and date at job start Mon Mar 30 2020 03:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.35553 * 125.90963 * 2 1 4 4 C 1.34273 * 107.92697 * 179.97438 * 3 2 1 5 5 O 1.21578 * 126.10953 * 180.02562 * 4 3 2 6 6 O 1.34276 * 107.77583 * 359.75133 * 4 3 2 7 7 C 1.32343 * 125.90621 * 179.97438 * 2 1 3 8 8 C 1.50693 * 125.90778 * 359.97438 * 7 2 1 9 9 N 1.46501 * 109.47511 * 90.00147 * 8 7 2 10 10 C 1.36933 * 119.99926 * 270.00059 * 9 8 7 11 11 H 1.08000 * 119.99947 * 330.51175 * 10 9 8 12 12 C 1.38820 * 120.00143 * 150.51059 * 10 9 8 13 13 N 1.31619 * 119.99532 * 341.83974 * 12 10 9 14 14 Si 1.86796 * 120.00231 * 161.83918 * 12 10 9 15 15 H 1.48501 * 109.46948 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47041 * 120.00015 * 14 12 10 17 17 H 1.48498 * 109.47193 * 240.00326 * 14 12 10 18 18 C 1.46500 * 120.00149 * 89.99416 * 9 8 7 19 19 C 1.52998 * 109.47308 * 297.83748 * 18 9 8 20 20 C 1.53008 * 109.46853 * 57.83613 * 18 9 8 21 21 H 1.08995 * 109.46515 * 270.02572 * 1 2 3 22 22 H 1.09002 * 109.46999 * 30.02467 * 1 2 3 23 23 H 1.08994 * 109.46750 * 150.02438 * 1 2 3 24 24 H 1.08992 * 109.47460 * 329.99802 * 8 7 2 25 25 H 1.09005 * 109.47461 * 210.00055 * 8 7 2 26 26 H 0.97003 * 119.99800 * 180.02562 * 13 12 10 27 27 H 1.08998 * 109.47049 * 177.83216 * 18 9 8 28 28 H 1.09002 * 109.46950 * 179.97438 * 19 18 9 29 29 H 1.08995 * 109.47198 * 299.99741 * 19 18 9 30 30 H 1.08998 * 109.47501 * 59.99744 * 19 18 9 31 31 H 1.08998 * 109.46969 * 299.99652 * 20 18 9 32 32 H 1.09001 * 109.46982 * 60.00047 * 20 18 9 33 33 H 1.09001 * 109.46736 * 180.02562 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3021 1.0979 0.0000 4 6 3.5792 0.6834 0.0006 5 8 4.5639 1.3964 0.0012 6 8 3.5744 -0.6594 0.0065 7 6 2.2832 -1.0719 0.0005 8 6 1.8128 -2.5036 0.0017 9 7 1.6599 -2.9686 -1.3791 10 6 0.4618 -2.8158 -2.0243 11 1 -0.4592 -2.8170 -1.4603 12 6 0.4311 -2.6594 -3.4033 13 7 1.5206 -2.3021 -4.0495 14 14 -1.1565 -2.9560 -4.3418 15 1 -2.2286 -3.3446 -3.3906 16 1 -1.5518 -1.7129 -5.0514 17 1 -0.9515 -4.0459 -5.3294 18 6 2.7889 -3.5970 -2.0697 19 6 3.9378 -2.5935 -2.1866 20 6 3.2570 -4.8180 -1.2753 21 1 -0.3632 0.0005 1.0277 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3632 -0.8902 -0.5134 24 1 0.8542 -2.5707 0.5159 25 1 2.5452 -3.1263 0.5157 26 1 1.4991 -2.1924 -5.0131 27 1 2.4767 -3.9097 -3.0661 28 1 4.7779 -3.0612 -2.7001 29 1 3.6044 -1.7237 -2.7525 30 1 4.2499 -2.2808 -1.1902 31 1 3.5691 -4.5053 -0.2789 32 1 2.4384 -5.5329 -1.1920 33 1 4.0972 -5.2853 -1.7889 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687722572.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:50 Heat of formation + Delta-G solvation = -81.005808 kcal Electronic energy + Delta-G solvation = -18549.661417 eV Core-core repulsion = 15577.375727 eV Total energy + Delta-G solvation = -2972.285690 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.98082 -39.37117 -38.86545 -38.22051 -34.22755 -33.82310 -31.74771 -29.26417 -27.70496 -26.57173 -25.05823 -24.87793 -23.22494 -21.07504 -19.23644 -18.85840 -18.48125 -17.56738 -16.80528 -16.42738 -15.87226 -15.51601 -15.12730 -15.05321 -14.55376 -14.43765 -14.16214 -13.82338 -13.32537 -13.25878 -13.03291 -12.99716 -12.77388 -12.69555 -12.61771 -12.34129 -12.01926 -11.74707 -11.60554 -11.25416 -10.44638 -9.49070 -8.74181 -7.85318 -5.33634 0.72943 0.82118 1.27529 1.51220 1.57240 1.63926 1.80502 2.54311 3.33526 3.64557 3.71208 3.81069 4.19142 4.47719 4.56119 4.72828 4.78241 4.82194 4.87400 4.89474 4.95903 4.97133 5.12795 5.22665 5.31299 5.41006 5.72505 5.77900 5.96086 5.97191 6.19339 6.43356 7.16159 7.82918 8.32324 9.18558 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.022922 B = 0.010143 C = 0.008534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.232343 B = 2759.829898 C = 3280.196643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.055 4.055 3 O -0.254 6.254 4 C 0.560 3.440 5 O -0.481 6.481 6 O -0.244 6.244 7 C -0.038 4.038 8 C 0.211 3.789 9 N -0.575 5.575 10 C -0.259 4.259 11 H 0.091 0.909 12 C -0.037 4.037 13 N -0.917 5.917 14 Si 0.955 3.045 15 H -0.255 1.255 16 H -0.302 1.302 17 H -0.300 1.300 18 C 0.174 3.826 19 C -0.135 4.135 20 C -0.152 4.152 21 H 0.113 0.887 22 H 0.079 0.921 23 H 0.102 0.898 24 H 0.118 0.882 25 H 0.084 0.916 26 H 0.246 0.754 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.025 0.975 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.357 -2.135 8.603 9.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.100 4.100 3 O -0.166 6.166 4 C 0.371 3.629 5 O -0.380 6.380 6 O -0.155 6.155 7 C -0.086 4.086 8 C 0.083 3.917 9 N -0.293 5.293 10 C -0.389 4.389 11 H 0.108 0.892 12 C -0.234 4.234 13 N -0.561 5.561 14 Si 0.785 3.215 15 H -0.179 1.179 16 H -0.230 1.230 17 H -0.228 1.228 18 C 0.068 3.932 19 C -0.194 4.194 20 C -0.210 4.210 21 H 0.131 0.869 22 H 0.098 0.902 23 H 0.121 0.879 24 H 0.136 0.864 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.818 -1.784 8.415 9.052 hybrid contribution -0.042 0.593 -1.313 1.442 sum -2.861 -1.192 7.102 7.748 Atomic orbital electron populations 1.20527 0.80724 1.05469 1.05194 1.22943 0.96712 0.80811 1.09572 1.85188 1.17336 1.35687 1.78382 1.21767 0.83366 0.81054 0.76742 1.91165 1.32761 1.57313 1.56763 1.85355 1.31012 1.21567 1.77540 1.25214 0.77277 1.01689 1.04433 1.20213 1.01023 0.81841 0.88643 1.44598 1.10052 1.63758 1.10879 1.19611 0.85719 1.43629 0.89896 0.89201 1.25785 0.98949 0.99561 0.99148 1.70219 1.29251 1.49130 1.07477 0.85398 0.80981 0.76283 0.78861 1.17887 1.23026 1.22772 1.20347 0.86069 0.90512 0.96247 1.21984 0.98073 1.00074 0.99277 1.22167 1.00424 0.98110 1.00300 0.86888 0.90220 0.87921 0.86427 0.89770 0.94463 0.91616 0.94259 0.95576 0.93940 0.92556 0.92774 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.65 9.96 71.24 0.71 -0.94 16 2 C -0.05 -1.91 7.29 24.60 0.18 -1.73 16 3 O -0.25 -9.88 10.81 16.29 0.18 -9.70 16 4 C 0.56 23.54 9.77 113.37 1.11 24.65 16 5 O -0.48 -22.02 18.05 27.16 0.49 -21.53 16 6 O -0.24 -9.84 8.55 16.29 0.14 -9.70 16 7 C -0.04 -1.39 6.05 24.60 0.15 -1.24 16 8 C 0.21 6.96 5.24 85.63 0.45 7.41 16 9 N -0.57 -23.69 2.40 -682.34 -1.64 -25.32 16 10 C -0.26 -11.53 8.47 84.04 0.71 -10.82 16 11 H 0.09 3.65 7.32 -2.91 -0.02 3.63 16 12 C -0.04 -1.81 4.86 84.86 0.41 -1.40 16 13 N -0.92 -49.28 10.34 21.65 0.22 -49.06 16 14 Si 0.96 40.08 29.59 68.60 2.03 42.11 16 15 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 16 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 17 H -0.30 -13.11 7.11 99.48 0.71 -12.41 16 18 C 0.17 7.37 2.39 44.99 0.11 7.48 16 19 C -0.14 -5.93 8.37 71.98 0.60 -5.33 16 20 C -0.15 -5.04 9.13 71.98 0.66 -4.39 16 21 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 22 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.10 2.91 5.86 -2.39 -0.01 2.89 16 24 H 0.12 3.16 7.55 -2.39 -0.02 3.15 16 25 H 0.08 2.50 6.32 -2.38 -0.02 2.49 16 26 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 27 H 0.07 3.28 5.87 -2.39 -0.01 3.27 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.03 1.33 7.35 -2.39 -0.02 1.31 16 30 H 0.04 1.77 5.38 -2.39 -0.01 1.76 16 31 H 0.06 1.69 6.59 -2.39 -0.02 1.67 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -59.51 273.84 7.63 -51.88 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.12 Total: 7.62 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 5.09 Total: 13.71 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -1.41 Total: -74.38 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: 0.81 Total: -40.93 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -59.51 7.63 -51.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687722572.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.128 kcal (2) G-P(sol) polarization free energy of solvation -59.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds