Wall clock time and date at job start Mon Mar 30 2020 03:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47405 * 2 1 4 4 C 1.36942 * 119.99862 * 83.21633 * 3 2 1 5 5 H 1.07997 * 119.99680 * 168.46350 * 4 3 2 6 6 C 1.38812 * 119.99844 * 348.46090 * 4 3 2 7 7 N 1.31619 * 120.00196 * 8.72698 * 6 4 3 8 8 Si 1.86795 * 119.99786 * 188.73032 * 6 4 3 9 9 H 1.48498 * 109.47562 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47511 * 119.99724 * 8 6 4 11 11 H 1.48503 * 109.47063 * 239.99723 * 8 6 4 12 12 C 1.46498 * 119.99970 * 263.21108 * 3 2 1 13 13 C 1.53002 * 109.47422 * 264.39565 * 12 3 2 14 14 H 1.09007 * 109.46891 * 306.24880 * 13 12 3 15 15 O 1.42904 * 109.46828 * 66.24183 * 13 12 3 16 16 C 1.50693 * 109.47373 * 186.24428 * 13 12 3 17 17 C 1.33388 * 125.20455 * 100.00098 * 16 13 12 18 18 C 1.38426 * 114.92217 * 179.97438 * 17 16 13 19 19 C 1.33396 * 114.91881 * 0.02562 * 18 17 16 20 20 S 1.75880 * 109.59356 * 359.75634 * 19 18 17 21 21 H 1.09001 * 109.47214 * 67.32078 * 1 2 3 22 22 H 1.08996 * 109.47857 * 187.32728 * 1 2 3 23 23 H 1.09007 * 109.46950 * 307.32431 * 1 2 3 24 24 H 1.08998 * 109.46882 * 240.00055 * 2 1 3 25 25 H 1.08999 * 109.46871 * 120.00403 * 2 1 3 26 26 H 0.96998 * 120.00012 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46712 * 144.39775 * 12 3 2 28 28 H 1.09001 * 109.47358 * 24.39784 * 12 3 2 29 29 H 0.96697 * 113.99672 * 60.00037 * 15 13 12 30 30 H 1.08002 * 122.54052 * 359.97438 * 17 16 13 31 31 H 1.08001 * 122.54509 * 180.02562 * 18 17 16 32 32 H 1.08000 * 125.20119 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1146 2.0734 1.1777 5 1 2.6432 3.0146 1.2091 6 6 1.5325 1.5653 2.3309 7 7 1.0392 0.3450 2.3365 8 14 1.4494 2.6134 3.8749 9 1 2.0697 3.9362 3.6093 10 1 0.0302 2.8020 4.2693 11 1 2.1826 1.9350 4.9737 12 6 2.4040 2.0217 -1.2598 13 6 3.9150 1.8873 -1.4588 14 1 4.4328 2.2712 -0.5797 15 8 4.2502 0.5108 -1.6457 16 6 4.3339 2.6757 -2.6728 17 6 4.8854 3.8900 -2.6485 18 6 5.1880 4.4182 -3.8917 19 6 4.8817 3.6330 -4.9257 20 16 4.1766 2.1326 -4.3384 21 1 -0.3634 0.3962 -0.9482 22 1 -0.3635 -1.0192 0.1311 23 1 -0.3633 0.6231 0.8173 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 0.6321 -0.0098 3.1422 27 1 2.1342 3.0773 -1.2281 28 1 1.8842 1.5386 -2.0871 29 1 3.8241 0.1028 -2.4118 30 1 5.0811 4.4208 -1.7286 31 1 5.6380 5.3922 -4.0153 32 1 5.0453 3.8794 -5.9644 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687802323.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:14 Heat of formation + Delta-G solvation = 17.865018 kcal Electronic energy + Delta-G solvation = -15430.079045 eV Core-core repulsion = 12904.833586 eV Total energy + Delta-G solvation = -2525.245458 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.24760 -36.73948 -35.21531 -31.52220 -30.38239 -29.14093 -26.71791 -24.37305 -23.12121 -21.69868 -20.17324 -19.19657 -17.60738 -16.66538 -15.69213 -15.08122 -14.91633 -14.37002 -13.69284 -13.50845 -13.12488 -12.67748 -12.53016 -11.92603 -11.88023 -11.67307 -11.23884 -10.94710 -10.90183 -10.62806 -10.49181 -10.44966 -9.95541 -9.86795 -9.63257 -9.37932 -8.54648 -8.34422 -8.26993 -6.76151 -5.58975 -3.09760 1.13891 1.75399 2.13078 2.88819 3.39080 3.45923 3.47508 4.47976 4.91719 4.98445 5.13131 5.40395 5.55857 5.67292 5.75537 5.87890 5.98362 6.22213 6.41348 6.53625 6.59471 6.69344 6.72107 7.06318 7.15444 7.31804 7.67961 7.99425 8.07370 8.14981 8.53172 9.30994 9.90551 10.33225 11.31572 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.034261 B = 0.006678 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.061034 B = 4192.028020 C = 4717.966808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.168 3.832 3 N -0.592 5.592 4 C -0.243 4.243 5 H 0.073 0.927 6 C -0.006 4.006 7 N -0.904 5.904 8 Si 0.907 3.093 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.292 1.292 12 C 0.132 3.868 13 C 0.147 3.853 14 H 0.115 0.885 15 O -0.542 6.542 16 C -0.180 4.180 17 C -0.151 4.151 18 C -0.127 4.127 19 C -0.228 4.228 20 S 0.088 5.912 21 H -0.002 1.002 22 H 0.021 0.979 23 H 0.078 0.922 24 H -0.002 1.002 25 H 0.106 0.894 26 H 0.248 0.752 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.360 0.640 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 4.217 -12.163 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.043 3.957 3 N -0.312 5.312 4 C -0.372 4.372 5 H 0.091 0.909 6 C -0.202 4.202 7 N -0.551 5.551 8 Si 0.737 3.263 9 H -0.206 1.206 10 H -0.217 1.217 11 H -0.219 1.219 12 C 0.002 3.998 13 C 0.082 3.918 14 H 0.132 0.868 15 O -0.345 6.345 16 C -0.298 4.298 17 C -0.180 4.180 18 C -0.158 4.158 19 C -0.364 4.364 20 S 0.350 5.650 21 H 0.017 0.983 22 H 0.040 0.960 23 H 0.097 0.903 24 H 0.016 0.984 25 H 0.123 0.877 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.205 0.795 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.977 2.936 -12.146 13.450 hybrid contribution 0.136 1.911 0.856 2.098 sum 5.113 4.847 -11.290 13.308 Atomic orbital electron populations 1.22348 0.99636 0.98970 0.98410 1.21067 0.91951 0.83970 0.98680 1.44110 1.74325 1.11582 1.01164 1.19340 1.28384 1.02776 0.86713 0.90934 1.24842 1.00110 0.96949 0.98285 1.70209 1.44209 1.14036 1.26690 0.86128 0.77311 0.79594 0.83218 1.20605 1.21711 1.21873 1.21359 0.90722 0.97845 0.89867 1.21651 0.99529 0.79612 0.91005 0.86755 1.86676 1.72484 1.23806 1.51522 1.25918 1.05206 1.00410 0.98303 1.20096 1.03113 0.95882 0.98955 1.20157 1.02836 1.01098 0.91735 1.25489 1.09597 0.98446 1.02837 1.84076 1.62092 1.19255 0.99560 0.98307 0.95958 0.90332 0.98357 0.87671 0.94021 0.92938 0.93673 0.79470 0.84287 0.84643 0.82320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.30 37.16 0.35 -2.88 16 2 C 0.17 4.15 5.68 -4.04 -0.02 4.13 16 3 N -0.59 -14.60 2.52 -173.24 -0.44 -15.04 16 4 C -0.24 -6.51 9.75 -15.06 -0.15 -6.66 16 5 H 0.07 1.89 7.84 -52.49 -0.41 1.48 16 6 C -0.01 -0.16 5.07 -17.43 -0.09 -0.25 16 7 N -0.90 -25.23 7.51 55.49 0.42 -24.81 16 8 Si 0.91 21.65 29.56 -169.99 -5.03 16.62 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 C 0.13 2.67 5.26 -4.04 -0.02 2.65 16 13 C 0.15 2.69 3.62 -27.89 -0.10 2.59 16 14 H 0.11 2.30 8.12 -51.92 -0.42 1.88 16 15 O -0.54 -10.25 13.07 -35.23 -0.46 -10.71 16 16 C -0.18 -2.80 5.48 -36.01 -0.20 -3.00 16 17 C -0.15 -2.16 10.04 -41.21 -0.41 -2.58 16 18 C -0.13 -1.57 10.18 -41.20 -0.42 -1.99 16 19 C -0.23 -2.70 11.23 29.04 0.33 -2.37 16 20 S 0.09 1.16 22.64 -107.50 -2.43 -1.27 16 21 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 22 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.08 2.11 6.13 -51.92 -0.32 1.79 16 24 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 25 H 0.11 2.94 5.85 -51.93 -0.30 2.64 16 26 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 28 H 0.04 0.87 8.03 -51.93 -0.42 0.45 16 29 H 0.36 5.72 8.45 45.56 0.38 6.10 16 30 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 281.34 15.07 4.24 4.24 Total: -1.00 -28.79 281.34 -8.00 -36.79 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -3.56 Total: 4.55 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -0.74 Total: -10.36 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: -0.02 Total: -39.85 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -0.46 Total: -10.71 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.43 Total: -1.27 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.79 -8.00 -36.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687802323.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.651 kcal (2) G-P(sol) polarization free energy of solvation -28.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds