Wall clock time and date at job start Mon Mar 30 2020 03:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47405 * 2 1 4 4 C 1.36942 * 119.99862 * 83.21633 * 3 2 1 5 5 H 1.07997 * 119.99680 * 168.46350 * 4 3 2 6 6 C 1.38812 * 119.99844 * 348.46090 * 4 3 2 7 7 N 1.31619 * 120.00196 * 8.72698 * 6 4 3 8 8 Si 1.86795 * 119.99786 * 188.73032 * 6 4 3 9 9 H 1.48498 * 109.47562 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47511 * 119.99724 * 8 6 4 11 11 H 1.48503 * 109.47063 * 239.99723 * 8 6 4 12 12 C 1.46498 * 119.99970 * 263.21108 * 3 2 1 13 13 C 1.53002 * 109.47422 * 264.39565 * 12 3 2 14 14 H 1.09007 * 109.46891 * 306.24880 * 13 12 3 15 15 O 1.42904 * 109.46828 * 66.24183 * 13 12 3 16 16 C 1.50693 * 109.47373 * 186.24428 * 13 12 3 17 17 C 1.33388 * 125.20455 * 100.00098 * 16 13 12 18 18 C 1.38426 * 114.92217 * 179.97438 * 17 16 13 19 19 C 1.33396 * 114.91881 * 0.02562 * 18 17 16 20 20 S 1.75880 * 109.59356 * 359.75634 * 19 18 17 21 21 H 1.09001 * 109.47214 * 67.32078 * 1 2 3 22 22 H 1.08996 * 109.47857 * 187.32728 * 1 2 3 23 23 H 1.09007 * 109.46950 * 307.32431 * 1 2 3 24 24 H 1.08998 * 109.46882 * 240.00055 * 2 1 3 25 25 H 1.08999 * 109.46871 * 120.00403 * 2 1 3 26 26 H 0.96998 * 120.00012 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46712 * 144.39775 * 12 3 2 28 28 H 1.09001 * 109.47358 * 24.39784 * 12 3 2 29 29 H 0.96697 * 113.99672 * 60.00037 * 15 13 12 30 30 H 1.08002 * 122.54052 * 359.97438 * 17 16 13 31 31 H 1.08001 * 122.54509 * 180.02562 * 18 17 16 32 32 H 1.08000 * 125.20119 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1146 2.0734 1.1777 5 1 2.6432 3.0146 1.2091 6 6 1.5325 1.5653 2.3309 7 7 1.0392 0.3450 2.3365 8 14 1.4494 2.6134 3.8749 9 1 2.0697 3.9362 3.6093 10 1 0.0302 2.8020 4.2693 11 1 2.1826 1.9350 4.9737 12 6 2.4040 2.0217 -1.2598 13 6 3.9150 1.8873 -1.4588 14 1 4.4328 2.2712 -0.5797 15 8 4.2502 0.5108 -1.6457 16 6 4.3339 2.6757 -2.6728 17 6 4.8854 3.8900 -2.6485 18 6 5.1880 4.4182 -3.8917 19 6 4.8817 3.6330 -4.9257 20 16 4.1766 2.1326 -4.3384 21 1 -0.3634 0.3962 -0.9482 22 1 -0.3635 -1.0192 0.1311 23 1 -0.3633 0.6231 0.8173 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 0.6321 -0.0098 3.1422 27 1 2.1342 3.0773 -1.2281 28 1 1.8842 1.5386 -2.0871 29 1 3.8241 0.1028 -2.4118 30 1 5.0811 4.4208 -1.7286 31 1 5.6380 5.3922 -4.0153 32 1 5.0453 3.8794 -5.9644 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687802323.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:14 Heat of formation + Delta-G solvation = 0.016260 kcal Electronic energy + Delta-G solvation = -15430.853025 eV Core-core repulsion = 12904.833586 eV Total energy + Delta-G solvation = -2526.019439 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.58497 -38.10535 -36.94312 -33.33286 -32.00799 -30.79767 -28.28986 -25.99286 -24.62898 -23.18920 -22.04736 -20.28177 -18.98357 -18.45180 -17.13618 -16.66769 -16.40072 -15.84112 -15.44213 -15.07662 -14.72275 -14.06624 -13.64015 -13.55897 -13.44305 -13.10590 -12.99292 -12.75207 -12.50359 -12.36706 -12.30011 -11.82879 -11.68454 -11.60684 -11.51525 -11.19662 -10.33337 -9.62250 -9.35713 -8.69164 -7.63418 -5.15117 0.08766 0.70353 1.10892 1.48299 1.50019 1.58689 1.85788 2.53517 3.35781 3.50967 3.56326 4.03777 4.22469 4.28505 4.43418 4.64770 4.71311 4.76803 4.90936 5.00660 5.14817 5.24403 5.27060 5.36375 5.42232 5.59324 5.60719 5.96704 6.16037 6.49926 6.72919 7.26740 7.95995 8.34170 9.25542 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.034261 B = 0.006678 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.061034 B = 4192.028020 C = 4717.966808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.172 3.828 3 N -0.608 5.608 4 C -0.252 4.252 5 H 0.073 0.927 6 C -0.056 4.056 7 N -0.923 5.923 8 Si 0.965 3.035 9 H -0.271 1.271 10 H -0.294 1.294 11 H -0.296 1.296 12 C 0.134 3.866 13 C 0.163 3.837 14 H 0.088 0.912 15 O -0.558 6.558 16 C -0.216 4.216 17 C -0.147 4.147 18 C -0.139 4.139 19 C -0.212 4.212 20 S 0.099 5.901 21 H 0.013 0.987 22 H 0.031 0.969 23 H 0.047 0.953 24 H 0.017 0.983 25 H 0.071 0.929 26 H 0.242 0.758 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.373 0.627 30 H 0.140 0.860 31 H 0.164 0.836 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.924 5.431 -14.125 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.048 3.952 3 N -0.330 5.330 4 C -0.382 4.382 5 H 0.091 0.909 6 C -0.250 4.250 7 N -0.572 5.572 8 Si 0.795 3.205 9 H -0.196 1.196 10 H -0.221 1.221 11 H -0.224 1.224 12 C 0.006 3.994 13 C 0.099 3.901 14 H 0.106 0.894 15 O -0.364 6.364 16 C -0.334 4.334 17 C -0.177 4.177 18 C -0.169 4.169 19 C -0.347 4.347 20 S 0.362 5.638 21 H 0.032 0.968 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.035 0.965 25 H 0.089 0.911 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.220 0.780 30 H 0.158 0.842 31 H 0.182 0.818 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 5.650 4.165 -14.150 15.795 hybrid contribution 0.005 1.562 1.319 2.045 sum 5.655 5.727 -12.831 15.146 Atomic orbital electron populations 1.22150 0.99146 0.98926 0.97812 1.20854 0.92316 0.84209 0.97841 1.44242 1.75103 1.11595 1.02022 1.19597 1.27948 1.02865 0.87764 0.90873 1.25507 1.00601 0.98015 1.00845 1.70412 1.45006 1.15022 1.26790 0.85213 0.76761 0.78569 0.79967 1.19571 1.22070 1.22367 1.21462 0.92163 0.97375 0.88388 1.21081 0.97423 0.79787 0.91805 0.89382 1.86630 1.72860 1.24349 1.52527 1.25520 1.08078 1.01054 0.98747 1.20378 1.01767 0.95319 1.00251 1.20393 1.03315 1.02500 0.90710 1.25971 1.07369 0.96964 1.04390 1.84012 1.62077 1.20149 0.97543 0.96818 0.95044 0.93414 0.96518 0.91076 0.94750 0.93158 0.92448 0.78003 0.84194 0.81832 0.79024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 9.30 71.98 0.67 -5.13 16 2 C 0.17 8.59 5.68 86.38 0.49 9.08 16 3 N -0.61 -30.23 2.52 -702.02 -1.77 -32.00 16 4 C -0.25 -13.67 9.75 84.03 0.82 -12.85 16 5 H 0.07 3.85 7.84 -2.91 -0.02 3.83 16 6 C -0.06 -3.10 5.07 84.86 0.43 -2.67 16 7 N -0.92 -52.76 7.51 21.65 0.16 -52.59 16 8 Si 0.97 45.16 29.56 68.60 2.03 47.19 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 12 C 0.13 5.39 5.26 86.38 0.45 5.84 16 13 C 0.16 5.97 3.62 29.85 0.11 6.07 16 14 H 0.09 3.64 8.12 -2.38 -0.02 3.62 16 15 O -0.56 -20.97 13.07 -148.98 -1.95 -22.91 16 16 C -0.22 -6.45 5.48 24.59 0.13 -6.32 16 17 C -0.15 -3.94 10.04 21.22 0.21 -3.72 16 18 C -0.14 -2.96 10.18 21.22 0.22 -2.74 16 19 C -0.21 -4.17 11.23 66.72 0.75 -3.43 16 20 S 0.10 2.38 22.64 -56.49 -1.28 1.10 16 21 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 22 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.05 2.59 6.13 -2.38 -0.01 2.57 16 24 H 0.02 0.75 7.84 -2.39 -0.02 0.73 16 25 H 0.07 4.07 5.85 -2.39 -0.01 4.06 16 26 H 0.24 13.57 8.31 -92.71 -0.77 12.80 16 27 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 28 H 0.06 2.14 8.03 -2.39 -0.02 2.12 16 29 H 0.37 11.51 8.45 -74.06 -0.63 10.88 16 30 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 31 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -61.67 281.34 1.97 -59.70 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.49 Total: 15.36 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 4.29 Total: -15.85 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -1.61 Total: -84.59 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -1.95 Total: -22.91 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -1.28 Total: 1.10 kcal Total: -61.67 1.97 -59.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687802323.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.719 kcal (2) G-P(sol) polarization free energy of solvation -61.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds