Wall clock time and date at job start Mon Mar 30 2020 03:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.46899 * 2 1 4 4 C 1.36940 * 119.99882 * 270.88283 * 3 2 1 5 5 H 1.07999 * 119.99849 * 326.02096 * 4 3 2 6 6 C 1.38812 * 120.00091 * 146.02261 * 4 3 2 7 7 N 1.31620 * 120.00016 * 336.65975 * 6 4 3 8 8 Si 1.86798 * 120.00143 * 156.65252 * 6 4 3 9 9 H 1.48498 * 109.47018 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47112 * 120.00083 * 8 6 4 11 11 H 1.48498 * 109.47418 * 240.00406 * 8 6 4 12 12 C 1.46493 * 119.99992 * 90.88879 * 3 2 1 13 13 C 1.52998 * 109.47347 * 89.99905 * 12 3 2 14 14 H 1.08997 * 109.47526 * 59.99575 * 13 12 3 15 15 O 1.42896 * 109.46944 * 299.99650 * 13 12 3 16 16 C 1.50704 * 109.47166 * 180.02562 * 13 12 3 17 17 C 1.33390 * 125.19811 * 264.99306 * 16 13 12 18 18 C 1.38431 * 114.92102 * 180.24672 * 17 16 13 19 19 C 1.33397 * 114.91629 * 359.49789 * 18 17 16 20 20 S 1.75878 * 125.20721 * 84.97098 * 16 13 12 21 21 H 1.09004 * 109.47235 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47343 * 300.00136 * 1 2 3 23 23 H 1.09002 * 109.47221 * 60.00038 * 1 2 3 24 24 H 1.09008 * 109.47083 * 239.99839 * 2 1 3 25 25 H 1.08999 * 109.46502 * 119.99853 * 2 1 3 26 26 H 0.96997 * 120.00223 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.47154 * 329.99253 * 12 3 2 28 28 H 1.09005 * 109.46948 * 209.99225 * 12 3 2 29 29 H 0.96701 * 114.00163 * 300.00063 * 15 13 12 30 30 H 1.07994 * 122.54510 * 359.97438 * 17 16 13 31 31 H 1.07987 * 122.54221 * 179.72922 * 18 17 16 32 32 H 1.07996 * 125.19900 * 180.20852 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2293 2.0328 -1.1858 5 1 2.5757 1.4842 -2.0492 6 6 1.9978 3.3984 -1.2781 7 7 1.1735 3.9846 -0.4360 8 14 2.8565 4.4042 -2.5974 9 1 3.7247 3.5154 -3.4107 10 1 1.8409 5.0406 -3.4740 11 1 3.6862 5.4559 -1.9565 12 6 2.2810 2.0652 1.2685 13 6 3.7322 1.8226 1.6878 14 1 4.4019 2.2106 0.9203 15 8 3.9536 0.4201 1.8483 16 6 4.0023 2.5258 2.9931 17 6 4.5351 3.7426 3.1151 18 6 4.6946 4.1815 4.4183 19 6 4.2815 3.3255 5.3542 20 16 3.6625 1.8680 4.5885 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 1.0115 4.9387 -0.5007 27 1 1.6113 1.6772 2.0360 28 1 2.1122 3.1351 1.1461 29 1 3.3904 0.0070 2.5172 30 1 4.8245 4.3383 2.2621 31 1 5.1177 5.1455 4.6588 32 1 4.3248 3.4989 6.4192 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687802324.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:16 Heat of formation + Delta-G solvation = -16.431094 kcal Electronic energy + Delta-G solvation = -15575.499349 eV Core-core repulsion = 13048.766699 eV Total energy + Delta-G solvation = -2526.732649 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.56662 -38.07248 -36.68723 -33.76334 -32.18068 -30.53508 -28.40730 -26.07632 -24.78056 -23.20301 -21.93057 -20.30515 -19.07446 -18.37220 -16.97781 -16.63221 -16.39752 -15.80125 -15.64145 -15.22715 -14.78236 -14.21524 -13.76840 -13.66392 -13.51372 -13.13242 -12.99558 -12.85217 -12.50253 -12.40022 -12.22244 -12.09153 -11.85932 -11.65910 -11.54773 -11.11316 -10.56937 -9.58923 -9.34315 -8.57879 -7.82939 -5.40296 0.09273 0.70358 1.09590 1.42599 1.47035 1.56759 1.85223 2.50235 3.20113 3.51243 3.59234 4.10289 4.24562 4.36555 4.45873 4.51727 4.65089 4.70789 4.83785 4.88625 5.07429 5.14562 5.27898 5.30129 5.42524 5.54322 5.58415 5.63275 5.75394 6.44035 6.73494 7.14864 7.85583 8.36697 9.12058 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.022245 B = 0.009012 C = 0.007140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.380266 B = 3106.357034 C = 3920.424375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.141 3.859 3 N -0.591 5.591 4 C -0.264 4.264 5 H 0.054 0.946 6 C -0.036 4.036 7 N -0.913 5.913 8 Si 0.950 3.050 9 H -0.271 1.271 10 H -0.291 1.291 11 H -0.286 1.286 12 C 0.132 3.868 13 C 0.167 3.833 14 H 0.083 0.917 15 O -0.554 6.554 16 C -0.212 4.212 17 C -0.155 4.155 18 C -0.139 4.139 19 C -0.213 4.213 20 S 0.108 5.892 21 H 0.068 0.932 22 H 0.032 0.968 23 H 0.025 0.975 24 H 0.038 0.962 25 H 0.059 0.941 26 H 0.252 0.748 27 H 0.031 0.969 28 H 0.079 0.921 29 H 0.371 0.629 30 H 0.129 0.871 31 H 0.162 0.838 32 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.736 -2.679 11.272 12.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.015 3.985 3 N -0.312 5.312 4 C -0.395 4.395 5 H 0.072 0.928 6 C -0.233 4.233 7 N -0.557 5.557 8 Si 0.778 3.222 9 H -0.196 1.196 10 H -0.218 1.218 11 H -0.213 1.213 12 C 0.005 3.995 13 C 0.104 3.896 14 H 0.101 0.899 15 O -0.360 6.360 16 C -0.330 4.330 17 C -0.185 4.185 18 C -0.169 4.169 19 C -0.348 4.348 20 S 0.370 5.630 21 H 0.087 0.913 22 H 0.052 0.948 23 H 0.045 0.955 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.218 0.782 30 H 0.147 0.853 31 H 0.180 0.820 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.505 -3.790 11.334 12.772 hybrid contribution 0.360 2.145 -1.018 2.402 sum 4.865 -1.646 10.316 11.523 Atomic orbital electron populations 1.22165 0.98986 1.00156 0.99893 1.21017 0.92186 0.85792 0.99471 1.43922 1.74580 1.10961 1.01687 1.19308 1.37616 0.91704 0.90863 0.92805 1.25668 0.98132 0.99317 1.00190 1.70100 1.34626 1.10236 1.40754 0.85486 0.78438 0.78842 0.79412 1.19573 1.21807 1.21271 1.21422 0.90778 1.00969 0.86348 1.20972 0.99463 0.79661 0.89551 0.89884 1.86578 1.65058 1.21399 1.62948 1.25606 1.07181 1.00798 0.99421 1.20315 1.03154 0.95941 0.99110 1.20349 1.03387 1.02274 0.90922 1.25953 1.07366 0.96935 1.04540 1.83781 1.62907 1.20070 0.96203 0.91311 0.94842 0.95548 0.94322 0.92231 0.93901 0.95073 0.90361 0.78155 0.85293 0.82023 0.78736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.03 10.24 71.98 0.74 -5.29 16 2 C 0.14 5.92 6.12 86.38 0.53 6.44 16 3 N -0.59 -29.36 2.37 -702.02 -1.67 -31.03 16 4 C -0.26 -14.55 9.48 84.03 0.80 -13.76 16 5 H 0.05 3.00 7.93 -2.91 -0.02 2.98 16 6 C -0.04 -1.97 4.94 84.86 0.42 -1.55 16 7 N -0.91 -52.58 11.34 21.65 0.25 -52.33 16 8 Si 0.95 44.51 29.61 68.60 2.03 46.54 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 C 0.13 6.15 4.97 86.38 0.43 6.58 16 13 C 0.17 6.79 3.68 29.85 0.11 6.90 16 14 H 0.08 3.81 8.14 -2.39 -0.02 3.79 16 15 O -0.55 -20.81 11.97 -148.98 -1.78 -22.59 16 16 C -0.21 -7.41 5.52 24.59 0.14 -7.28 16 17 C -0.15 -5.13 10.05 21.22 0.21 -4.91 16 18 C -0.14 -3.64 10.18 21.22 0.22 -3.43 16 19 C -0.21 -4.98 11.23 66.72 0.75 -4.24 16 20 S 0.11 2.94 22.53 -56.49 -1.27 1.66 16 21 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 22 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.04 1.63 8.05 -2.38 -0.02 1.61 16 25 H 0.06 2.21 6.90 -2.39 -0.02 2.19 16 26 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 27 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 28 H 0.08 4.22 5.33 -2.38 -0.01 4.21 16 29 H 0.37 11.50 8.14 -74.06 -0.60 10.89 16 30 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 31 H 0.16 3.28 8.06 -2.92 -0.02 3.26 16 32 H 0.20 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -62.21 285.00 2.40 -59.81 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.51 Total: 18.46 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 4.33 Total: -20.53 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -1.42 Total: -83.35 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -1.78 Total: -22.59 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.27 Total: 1.66 kcal Total: -62.21 2.40 -59.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687802324.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.379 kcal (2) G-P(sol) polarization free energy of solvation -62.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds