Wall clock time and date at job start Mon Mar 30 2020 03:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47608 * 2 1 4 4 C 1.52999 * 109.47401 * 239.99378 * 2 1 3 5 5 C 1.50696 * 109.47386 * 175.00476 * 4 2 1 6 6 H 1.08007 * 119.99947 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00120 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00128 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00026 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46771 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46969 * 119.99889 * 9 7 5 12 12 H 1.48499 * 109.47380 * 239.99993 * 9 7 5 13 13 N 1.46900 * 109.46664 * 119.99412 * 2 1 3 14 14 C 1.46904 * 110.99931 * 58.95461 * 13 2 1 15 15 C 1.46895 * 111.00578 * 295.00032 * 13 2 1 16 16 C 1.50696 * 109.47683 * 190.00027 * 15 13 2 17 17 C 1.35343 * 127.92304 * 89.99349 * 16 15 13 18 18 N 1.31744 * 112.46438 * 179.71527 * 17 16 15 19 19 N 1.27575 * 118.27592 * 0.27528 * 18 17 16 20 20 S 1.56509 * 109.22069 * 359.97438 * 19 18 17 21 21 H 1.09003 * 109.46446 * 60.00336 * 1 2 3 22 22 H 1.09001 * 109.47608 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47249 * 300.00714 * 1 2 3 24 24 H 1.09004 * 109.47043 * 295.00789 * 4 2 1 25 25 H 1.08996 * 109.46883 * 55.00217 * 4 2 1 26 26 H 0.96994 * 119.99527 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47275 * 296.04531 * 14 13 2 28 28 H 1.09004 * 109.47093 * 56.04922 * 14 13 2 29 29 H 1.09003 * 109.47225 * 176.04186 * 14 13 2 30 30 H 1.09006 * 109.46680 * 69.99843 * 15 13 2 31 31 H 1.09000 * 109.46898 * 310.00171 * 15 13 2 32 32 H 1.08002 * 123.77006 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5419 -0.6151 -1.3126 6 1 4.0790 -0.0863 -0.5390 7 6 4.2304 -1.1930 -2.3580 8 7 3.5764 -1.8373 -3.2998 9 14 6.0920 -1.0606 -2.4370 10 1 6.5837 -0.2913 -1.2658 11 1 6.6862 -2.4215 -2.4195 12 1 6.4863 -0.3645 -3.6881 13 7 2.0195 -0.6924 1.1995 14 6 1.5281 -2.0760 1.2461 15 6 1.6486 0.0393 2.4181 16 6 2.3676 -0.5569 3.6007 17 6 3.5789 -0.2134 4.0973 18 7 3.9143 -0.9329 5.1487 19 7 3.1008 -1.8289 5.5524 20 16 1.8377 -1.8321 4.6281 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.7516 -1.7716 -1.2054 25 1 1.6055 -0.2619 -2.1369 26 1 4.0608 -2.2435 -4.0354 27 1 0.4418 -2.0730 1.3349 28 1 1.8166 -2.5950 0.3321 29 1 1.9615 -2.5868 2.1061 30 1 0.5720 -0.0344 2.5725 31 1 1.9296 1.0871 2.3125 32 1 4.1993 0.5665 3.6810 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695812713.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:19 Heat of formation + Delta-G solvation = 73.669590 kcal Electronic energy + Delta-G solvation = -15321.699762 eV Core-core repulsion = 12831.166922 eV Total energy + Delta-G solvation = -2490.532839 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.66322 -38.13306 -33.58241 -32.29480 -30.34259 -28.10722 -27.40249 -25.93870 -24.08426 -22.71819 -20.74133 -19.00737 -18.81190 -16.27511 -16.09989 -15.51871 -15.06524 -14.59187 -14.34932 -14.09415 -13.37265 -12.97989 -12.34884 -12.18551 -12.04244 -11.76373 -11.70825 -11.32789 -10.99855 -10.88253 -10.70419 -10.45851 -10.08286 -10.02762 -9.76841 -9.55803 -9.24798 -9.04150 -8.31876 -7.71441 -5.95018 -3.93390 0.31360 1.17486 1.79646 2.38545 3.35059 3.43211 3.48252 4.29921 4.46606 4.52648 4.78185 4.97677 5.42283 5.53565 5.54819 5.61033 5.76326 5.78735 5.81075 5.88558 6.00243 6.31260 6.51575 6.60566 6.82793 7.36930 7.48797 7.74767 7.83800 7.85885 8.05586 8.49374 9.13011 9.69346 11.16821 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.025157 B = 0.007042 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.738102 B = 3975.110253 C = 4669.721891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.088 3.912 3 H 0.074 0.926 4 C 0.028 3.972 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.509 5.509 14 C 0.017 3.983 15 C 0.128 3.872 16 C -0.223 4.223 17 C 0.005 3.995 18 N -0.243 5.243 19 N -0.300 5.300 20 S 0.402 5.598 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.040 0.960 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.257 0.743 27 H 0.022 0.978 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.248 2.725 12.071 14.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.020 4.020 3 H 0.092 0.908 4 C -0.009 4.009 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.232 5.232 14 C -0.131 4.131 15 C -0.003 4.003 16 C -0.362 4.362 17 C -0.159 4.159 18 N -0.109 5.109 19 N -0.279 5.279 20 S 0.536 5.464 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.813 1.283 13.297 14.996 hybrid contribution 0.695 1.150 -1.178 1.787 sum -6.118 2.434 12.120 13.793 Atomic orbital electron populations 1.22552 0.99488 1.01568 1.00963 1.21985 0.90215 0.98588 0.91192 0.90779 1.19257 0.96518 0.95467 0.89696 1.21202 0.91702 1.33206 1.07086 0.92020 1.25002 0.98081 0.95777 0.95957 1.69965 1.35215 1.36851 1.12327 0.86589 0.86342 0.77646 0.77733 1.19728 1.21320 1.21321 1.62174 1.59227 1.01868 0.99967 1.22527 0.96599 0.90589 1.03373 1.20457 0.95479 0.98223 0.86123 1.27286 1.00405 1.03538 1.04982 1.23713 0.95638 1.02774 0.93737 1.71258 1.23825 1.02812 1.13048 1.78828 1.04351 1.19787 1.24948 1.81401 1.25686 1.25539 1.13797 0.92180 0.92680 0.94057 0.96041 0.96051 0.93294 0.95966 0.89037 0.93305 0.93377 0.88556 0.78158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.81 8.50 37.16 0.32 -2.50 16 2 C 0.09 1.61 2.29 -67.71 -0.16 1.45 16 3 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 4 C 0.03 0.66 4.27 -27.89 -0.12 0.54 16 5 C -0.49 -13.28 8.84 -34.44 -0.30 -13.59 16 6 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.73 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 N -0.51 -8.68 4.46 -236.33 -1.05 -9.73 16 14 C 0.02 0.29 8.53 60.07 0.51 0.80 16 15 C 0.13 1.68 4.99 -4.98 -0.02 1.66 16 16 C -0.22 -2.96 5.39 -35.34 -0.19 -3.15 16 17 C 0.01 0.07 11.53 -18.62 -0.21 -0.14 16 18 N -0.24 -3.84 11.68 29.33 0.34 -3.50 16 19 N -0.30 -4.56 12.54 60.35 0.76 -3.80 16 20 S 0.40 4.92 22.11 -107.50 -2.38 2.55 16 21 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 22 H 0.05 0.83 6.47 -51.93 -0.34 0.50 16 23 H 0.04 0.52 6.75 -51.93 -0.35 0.17 16 24 H 0.02 0.54 6.10 -51.93 -0.32 0.23 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.02 0.32 6.51 -51.93 -0.34 -0.02 16 28 H 0.09 1.77 6.03 -51.93 -0.31 1.46 16 29 H 0.05 0.74 6.17 -51.93 -0.32 0.42 16 30 H 0.05 0.56 6.94 -51.93 -0.36 0.20 16 31 H 0.10 1.17 8.00 -51.93 -0.42 0.75 16 32 H 0.20 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 276.13 15.07 4.16 4.16 Total: -1.00 -30.34 276.13 -6.71 -37.05 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -3.98 Total: -4.04 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -0.28 Total: -13.58 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.78 Total: -42.88 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -2.38 Total: 2.55 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.34 -6.71 -37.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812713.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.721 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds