Wall clock time and date at job start Mon Mar 30 2020 03:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47608 * 2 1 4 4 C 1.52999 * 109.47401 * 239.99378 * 2 1 3 5 5 C 1.50696 * 109.47386 * 175.00476 * 4 2 1 6 6 H 1.08007 * 119.99947 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00120 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00128 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00026 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46771 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46969 * 119.99889 * 9 7 5 12 12 H 1.48499 * 109.47380 * 239.99993 * 9 7 5 13 13 N 1.46900 * 109.46664 * 119.99412 * 2 1 3 14 14 C 1.46904 * 110.99931 * 58.95461 * 13 2 1 15 15 C 1.46895 * 111.00578 * 295.00032 * 13 2 1 16 16 C 1.50696 * 109.47683 * 190.00027 * 15 13 2 17 17 C 1.35343 * 127.92304 * 89.99349 * 16 15 13 18 18 N 1.31744 * 112.46438 * 179.71527 * 17 16 15 19 19 N 1.27575 * 118.27592 * 0.27528 * 18 17 16 20 20 S 1.56509 * 109.22069 * 359.97438 * 19 18 17 21 21 H 1.09003 * 109.46446 * 60.00336 * 1 2 3 22 22 H 1.09001 * 109.47608 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47249 * 300.00714 * 1 2 3 24 24 H 1.09004 * 109.47043 * 295.00789 * 4 2 1 25 25 H 1.08996 * 109.46883 * 55.00217 * 4 2 1 26 26 H 0.96994 * 119.99527 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47275 * 296.04531 * 14 13 2 28 28 H 1.09004 * 109.47093 * 56.04922 * 14 13 2 29 29 H 1.09003 * 109.47225 * 176.04186 * 14 13 2 30 30 H 1.09006 * 109.46680 * 69.99843 * 15 13 2 31 31 H 1.09000 * 109.46898 * 310.00171 * 15 13 2 32 32 H 1.08002 * 123.77006 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5419 -0.6151 -1.3126 6 1 4.0790 -0.0863 -0.5390 7 6 4.2304 -1.1930 -2.3580 8 7 3.5764 -1.8373 -3.2998 9 14 6.0920 -1.0606 -2.4370 10 1 6.5837 -0.2913 -1.2658 11 1 6.6862 -2.4215 -2.4195 12 1 6.4863 -0.3645 -3.6881 13 7 2.0195 -0.6924 1.1995 14 6 1.5281 -2.0760 1.2461 15 6 1.6486 0.0393 2.4181 16 6 2.3676 -0.5569 3.6007 17 6 3.5789 -0.2134 4.0973 18 7 3.9143 -0.9329 5.1487 19 7 3.1008 -1.8289 5.5524 20 16 1.8377 -1.8321 4.6281 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.7516 -1.7716 -1.2054 25 1 1.6055 -0.2619 -2.1369 26 1 4.0608 -2.2435 -4.0354 27 1 0.4418 -2.0730 1.3349 28 1 1.8166 -2.5950 0.3321 29 1 1.9615 -2.5868 2.1061 30 1 0.5720 -0.0344 2.5725 31 1 1.9296 1.0871 2.3125 32 1 4.1993 0.5665 3.6810 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812713.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:19 Heat of formation + Delta-G solvation = 52.978427 kcal Electronic energy + Delta-G solvation = -15322.596998 eV Core-core repulsion = 12831.166922 eV Total energy + Delta-G solvation = -2491.430076 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.73931 -39.46787 -35.24806 -33.88388 -31.73099 -29.35362 -29.04909 -27.13586 -25.53413 -24.37714 -21.86638 -20.37063 -19.92208 -18.34521 -17.35272 -16.76962 -16.35784 -16.23660 -15.62167 -15.35900 -14.63130 -14.37045 -13.94560 -13.66164 -13.39984 -13.07083 -13.00356 -12.94136 -12.65473 -12.35211 -12.27995 -12.05271 -11.77479 -11.11530 -11.09739 -11.04417 -10.76536 -10.56219 -10.45990 -8.97320 -8.09507 -6.13045 -0.74374 0.17942 0.76137 1.31131 1.40188 1.43010 1.54194 2.47464 3.14006 3.27040 3.33501 3.75242 3.94534 4.25664 4.37363 4.46506 4.52098 4.65567 4.68018 4.76074 4.83149 5.01197 5.17424 5.26281 5.32395 5.53173 5.73826 5.92633 6.28578 6.33925 6.49848 6.78576 7.02577 7.53159 9.02518 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.025157 B = 0.007042 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.738102 B = 3975.110253 C = 4669.721891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.098 3.902 3 H 0.075 0.925 4 C 0.031 3.969 5 C -0.496 4.496 6 H 0.060 0.940 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.948 3.052 10 H -0.265 1.265 11 H -0.289 1.289 12 H -0.282 1.282 13 N -0.533 5.533 14 C 0.023 3.977 15 C 0.132 3.868 16 C -0.233 4.233 17 C 0.000 4.000 18 N -0.273 5.273 19 N -0.334 5.334 20 S 0.466 5.534 21 H 0.057 0.943 22 H 0.052 0.948 23 H 0.075 0.925 24 H 0.001 0.999 25 H -0.005 1.005 26 H 0.257 0.743 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.900 3.533 13.370 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.010 4.010 3 H 0.094 0.906 4 C -0.007 4.007 5 C -0.534 4.534 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.582 5.582 9 Si 0.775 3.225 10 H -0.189 1.189 11 H -0.215 1.215 12 H -0.209 1.209 13 N -0.257 5.257 14 C -0.125 4.125 15 C 0.002 3.998 16 C -0.372 4.372 17 C -0.165 4.165 18 N -0.138 5.138 19 N -0.314 5.314 20 S 0.600 5.400 21 H 0.076 0.924 22 H 0.071 0.929 23 H 0.094 0.906 24 H 0.019 0.981 25 H 0.013 0.987 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -7.462 2.099 14.624 16.551 hybrid contribution 0.832 0.872 -1.567 1.977 sum -6.630 2.971 13.056 14.942 Atomic orbital electron populations 1.22432 0.96701 1.01964 1.02574 1.21645 0.92370 0.97559 0.89409 0.90649 1.19138 0.94968 0.94751 0.91806 1.21575 0.93481 1.31964 1.06409 0.92147 1.25786 1.02309 0.95912 0.95994 1.70084 1.36800 1.38246 1.13108 0.85638 0.81422 0.77437 0.77969 1.18880 1.21502 1.20852 1.61986 1.60427 1.02287 1.01017 1.22407 0.98167 0.90244 1.01728 1.20516 0.96922 0.98340 0.84026 1.27391 1.00415 1.04074 1.05289 1.24004 0.96169 1.02896 0.93382 1.71294 1.24799 1.03597 1.14139 1.78607 1.05738 1.20402 1.26612 1.81100 1.23365 1.23675 1.11886 0.92384 0.92871 0.90637 0.98097 0.98702 0.93394 0.93512 0.92890 0.92404 0.90763 0.87125 0.76839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.88 8.50 71.98 0.61 -4.27 16 2 C 0.10 3.44 2.29 44.91 0.10 3.54 16 3 H 0.08 2.62 8.03 -2.39 -0.02 2.60 16 4 C 0.03 1.47 4.27 29.85 0.13 1.60 16 5 C -0.50 -26.84 8.84 25.60 0.23 -26.62 16 6 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -56.49 13.29 21.45 0.28 -56.21 16 9 Si 0.95 44.88 29.54 68.60 2.03 46.91 16 10 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 N -0.53 -17.06 4.46 -901.62 -4.02 -21.08 16 14 C 0.02 0.71 8.53 127.69 1.09 1.80 16 15 C 0.13 3.00 4.99 85.56 0.43 3.43 16 16 C -0.23 -5.52 5.39 25.02 0.13 -5.39 16 17 C 0.00 0.00 11.53 84.04 0.97 0.97 16 18 N -0.27 -8.30 11.68 -61.13 -0.71 -9.01 16 19 N -0.33 -9.68 12.54 37.02 0.46 -9.22 16 20 S 0.47 10.22 22.11 -56.49 -1.25 8.97 16 21 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.05 1.47 6.47 -2.39 -0.02 1.46 16 23 H 0.07 1.57 6.75 -2.39 -0.02 1.56 16 24 H 0.00 0.04 6.10 -2.39 -0.01 0.03 16 25 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 26 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 27 H 0.05 1.21 6.51 -2.39 -0.02 1.19 16 28 H 0.05 2.07 6.03 -2.38 -0.01 2.05 16 29 H 0.06 1.65 6.17 -2.39 -0.01 1.64 16 30 H 0.07 1.35 6.94 -2.38 -0.02 1.33 16 31 H 0.11 2.24 8.00 -2.39 -0.02 2.23 16 32 H 0.22 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -65.82 276.13 2.07 -63.75 By element: Atomic # 1 Polarization: -0.54 SS G_CDS: 1.12 Total: 0.58 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 4.15 Total: -24.69 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -3.98 Total: -95.51 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 10.22 SS G_CDS: -1.25 Total: 8.97 kcal Total: -65.82 2.07 -63.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812713.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.731 kcal (2) G-P(sol) polarization free energy of solvation -65.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds