Wall clock time and date at job start Mon Mar 30 2020 03:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47026 * 2 1 4 4 C 1.52993 * 109.47315 * 119.99690 * 2 1 3 5 5 C 1.50702 * 109.47332 * 182.93326 * 4 2 1 6 6 H 1.08000 * 120.00236 * 355.13166 * 5 4 2 7 7 C 1.37882 * 120.00146 * 175.14004 * 5 4 2 8 8 N 1.31516 * 119.99993 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99949 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.46977 * 89.99912 * 9 7 5 11 11 H 1.48500 * 109.46871 * 209.99665 * 9 7 5 12 12 H 1.48499 * 109.46805 * 329.99861 * 9 7 5 13 13 N 1.46903 * 109.47248 * 240.00077 * 2 1 3 14 14 C 1.46895 * 111.00135 * 72.79246 * 13 2 1 15 15 C 1.46902 * 110.99631 * 308.83685 * 13 2 1 16 16 C 1.50703 * 109.46933 * 189.99894 * 15 13 2 17 17 C 1.35342 * 127.91979 * 90.00477 * 16 15 13 18 18 N 1.31743 * 112.46581 * 180.30173 * 17 16 15 19 19 N 1.27580 * 118.26853 * 359.47514 * 18 17 16 20 20 S 1.56503 * 109.22123 * 0.50833 * 19 18 17 21 21 H 1.09005 * 109.47026 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47475 * 300.00307 * 1 2 3 23 23 H 1.09004 * 109.47214 * 60.00608 * 1 2 3 24 24 H 1.09001 * 109.47114 * 302.93120 * 4 2 1 25 25 H 1.08998 * 109.47013 * 62.92674 * 4 2 1 26 26 H 0.96993 * 119.99954 * 179.97438 * 8 7 5 27 27 H 1.08999 * 109.47347 * 290.01326 * 14 13 2 28 28 H 1.09000 * 109.47376 * 50.01520 * 14 13 2 29 29 H 1.09003 * 109.47022 * 170.00743 * 14 13 2 30 30 H 1.08999 * 109.46870 * 70.00814 * 15 13 2 31 31 H 1.09000 * 109.47318 * 310.00284 * 15 13 2 32 32 H 1.08004 * 123.76713 * 0.03056 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5453 -0.6585 1.2861 6 1 4.0881 -0.2244 0.4595 7 6 4.2295 -1.1555 2.3751 8 7 3.5685 -1.6838 3.3819 9 14 6.0954 -1.0785 2.4205 10 1 6.5229 0.1978 3.0476 11 1 6.6187 -2.2195 3.2137 12 1 6.6276 -1.1525 1.0361 13 7 2.0197 -0.6925 -1.1995 14 6 1.8127 0.1262 -2.4014 15 6 1.3843 -2.0091 -1.3434 16 6 2.0801 -2.7865 -2.4309 17 6 3.1393 -3.6203 -2.3098 18 7 3.5076 -4.1372 -3.4643 19 7 2.8484 -3.8155 -4.5082 20 16 1.7107 -2.8167 -4.1116 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 1.6344 -0.2385 2.1384 25 1 1.7202 -1.7628 1.2234 26 1 4.0499 -2.0338 4.1478 27 1 0.7473 0.1805 -2.6251 28 1 2.1991 1.1306 -2.2280 29 1 2.3382 -0.3248 -3.2432 30 1 0.3341 -1.8791 -1.6049 31 1 1.4597 -2.5538 -0.4023 32 1 3.6307 -3.8343 -1.3722 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812714.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:21 Heat of formation + Delta-G solvation = 52.907144 kcal Electronic energy + Delta-G solvation = -15455.070834 eV Core-core repulsion = 12963.637667 eV Total energy + Delta-G solvation = -2491.433167 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.75937 -39.46823 -35.13961 -33.81349 -31.97980 -29.44102 -29.01826 -26.84760 -25.53072 -24.30452 -22.15963 -20.44770 -19.81604 -18.31530 -17.26402 -16.84461 -16.45856 -15.80850 -15.60902 -15.56044 -14.53667 -14.28177 -14.12322 -13.64341 -13.26296 -13.08007 -13.02252 -12.99925 -12.67704 -12.46899 -12.30056 -12.02910 -11.82100 -11.12418 -11.08613 -11.02718 -10.79896 -10.56362 -10.41404 -8.96871 -8.07595 -6.10591 -0.75300 0.15315 0.75234 1.28034 1.41788 1.44261 1.53989 2.48784 3.13366 3.25963 3.32734 3.75855 3.92354 4.22273 4.40421 4.48537 4.51465 4.64755 4.70707 4.75506 4.86059 5.03390 5.09505 5.24700 5.29765 5.54610 5.74635 5.93325 6.28010 6.35550 6.52572 6.77421 7.04663 7.55437 9.03975 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.008040 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.211967 B = 3481.847505 C = 4282.527887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 H 0.069 0.931 4 C 0.034 3.966 5 C -0.495 4.495 6 H 0.057 0.943 7 C 0.000 4.000 8 N -0.937 5.937 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.271 1.271 13 N -0.536 5.536 14 C 0.017 3.983 15 C 0.137 3.863 16 C -0.232 4.232 17 C -0.003 4.003 18 N -0.271 5.271 19 N -0.333 5.333 20 S 0.485 5.515 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.071 0.929 24 H -0.003 1.003 25 H 0.001 0.999 26 H 0.257 0.743 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.348 1.564 -12.939 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.010 4.010 3 H 0.087 0.913 4 C -0.004 4.004 5 C -0.534 4.534 6 H 0.076 0.924 7 C -0.196 4.196 8 N -0.580 5.580 9 Si 0.772 3.228 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.196 1.196 13 N -0.260 5.260 14 C -0.131 4.131 15 C 0.007 3.993 16 C -0.371 4.371 17 C -0.167 4.167 18 N -0.136 5.136 19 N -0.312 5.312 20 S 0.619 5.381 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.090 0.910 24 H 0.015 0.985 25 H 0.019 0.981 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.788 1.035 -14.644 16.619 hybrid contribution 0.781 -0.007 2.166 2.302 sum -7.007 1.028 -12.478 14.348 Atomic orbital electron populations 1.22432 0.96495 1.02189 1.02451 1.21660 0.92506 0.97165 0.89692 0.91254 1.19090 0.94923 0.94574 0.91783 1.21505 0.93257 1.36582 1.02023 0.92432 1.25722 1.01958 0.96044 0.95869 1.70063 1.36664 1.42762 1.08477 0.85744 0.81812 0.77322 0.77905 1.20425 1.21525 1.19552 1.61922 1.58712 1.02232 1.03134 1.22534 1.00345 0.98079 0.92132 1.20391 0.94691 0.89717 0.94474 1.27361 1.02331 1.03940 1.03424 1.23861 0.97020 0.97536 0.98314 1.71324 1.23685 1.23030 0.95536 1.78554 1.10788 1.18141 1.23750 1.80824 1.28966 1.32569 0.95732 0.92338 0.92382 0.91036 0.98496 0.98108 0.93385 0.93279 0.91108 0.92345 0.90607 0.89510 0.78500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.84 8.41 71.98 0.61 -4.24 16 2 C 0.10 3.45 2.27 44.91 0.10 3.56 16 3 H 0.07 2.52 7.87 -2.38 -0.02 2.50 16 4 C 0.03 1.59 4.40 29.85 0.13 1.72 16 5 C -0.50 -26.56 8.80 25.60 0.23 -26.34 16 6 H 0.06 3.09 7.69 -2.91 -0.02 3.07 16 7 C 0.00 0.02 5.46 84.66 0.46 0.48 16 8 N -0.94 -55.52 13.29 21.45 0.28 -55.24 16 9 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 N -0.54 -17.26 4.30 -901.62 -3.87 -21.14 16 14 C 0.02 0.42 8.88 127.69 1.13 1.56 16 15 C 0.14 3.94 4.41 85.56 0.38 4.32 16 16 C -0.23 -6.46 5.39 25.02 0.13 -6.32 16 17 C 0.00 -0.09 11.53 84.04 0.97 0.88 16 18 N -0.27 -9.10 11.68 -61.14 -0.71 -9.81 16 19 N -0.33 -10.05 12.54 37.02 0.46 -9.58 16 20 S 0.49 10.91 22.29 -56.49 -1.26 9.65 16 21 H 0.06 1.54 6.54 -2.38 -0.02 1.53 16 22 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.07 1.56 7.02 -2.38 -0.02 1.54 16 24 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 25 H 0.00 0.04 6.36 -2.39 -0.02 0.02 16 26 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 27 H 0.05 0.95 7.08 -2.39 -0.02 0.93 16 28 H 0.07 1.73 7.90 -2.39 -0.02 1.71 16 29 H 0.06 1.37 6.58 -2.39 -0.02 1.36 16 30 H 0.08 1.73 6.77 -2.39 -0.02 1.71 16 31 H 0.09 2.96 6.18 -2.39 -0.01 2.94 16 32 H 0.20 6.42 8.06 -2.91 -0.02 6.39 16 Total: -1.00 -63.90 277.17 2.19 -61.72 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.12 Total: 2.09 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 4.14 Total: -24.38 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -3.84 Total: -95.77 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 10.91 SS G_CDS: -1.26 Total: 9.65 kcal Total: -63.90 2.19 -61.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812714.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.624 kcal (2) G-P(sol) polarization free energy of solvation -63.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds