Wall clock time and date at job start Mon Mar 30 2020 04:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46830 * 2 1 4 4 C 1.52999 * 109.46899 * 239.99990 * 2 1 3 5 5 C 1.50701 * 109.47102 * 173.98907 * 4 2 1 6 6 H 1.08007 * 119.99629 * 354.57376 * 5 4 2 7 7 C 1.37871 * 120.00304 * 174.57492 * 5 4 2 8 8 N 1.31514 * 120.00015 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00110 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47372 * 89.99876 * 9 7 5 11 11 H 1.48498 * 109.47273 * 209.99867 * 9 7 5 12 12 H 1.48504 * 109.47028 * 329.99691 * 9 7 5 13 13 N 1.46495 * 109.46671 * 120.00409 * 2 1 3 14 14 C 1.33805 * 118.71012 * 63.87149 * 13 2 1 15 15 O 1.21279 * 118.34576 * 4.64924 * 14 13 2 16 16 C 1.50212 * 123.27430 * 184.61626 * 14 13 2 17 17 O 1.45471 * 109.96479 * 343.00817 * 16 14 13 18 18 C 1.35269 * 114.66323 * 42.96254 * 17 16 14 19 19 O 1.20818 * 121.44121 * 121.37883 * 18 17 16 20 20 C 1.46232 * 118.62418 * 243.95262 * 13 2 1 21 21 H 1.08992 * 109.53302 * 45.90745 * 20 13 2 22 22 C 1.53008 * 109.52926 * 285.76496 * 20 13 2 23 23 H 1.09000 * 109.46650 * 60.00002 * 1 2 3 24 24 H 1.08998 * 109.47105 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47297 * 299.99749 * 1 2 3 26 26 H 1.08995 * 109.47853 * 293.98963 * 4 2 1 27 27 H 1.09006 * 109.47131 * 53.99192 * 4 2 1 28 28 H 0.97002 * 119.99768 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.39004 * 222.85136 * 16 14 13 30 30 H 1.09006 * 109.39040 * 103.16090 * 16 14 13 31 31 H 1.09002 * 109.46945 * 307.87989 * 22 20 13 32 32 H 1.08997 * 109.47060 * 67.88671 * 22 20 13 33 33 H 1.09005 * 109.46938 * 187.88341 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5397 -0.5937 -1.3259 6 1 4.0667 0.0201 -0.6104 7 6 4.2389 -1.2605 -2.3095 8 7 3.5971 -2.0075 -3.1811 9 14 6.0978 -1.1030 -2.4041 10 1 6.7273 -2.1674 -1.5819 11 1 6.5354 -1.2443 -3.8161 12 1 6.5086 0.2281 -1.8894 13 7 2.0183 -0.6907 1.1961 14 6 1.7452 -1.9923 1.3432 15 8 1.1778 -2.5674 0.4387 16 6 2.1070 -2.7765 2.5722 17 8 3.1055 -2.0549 3.3458 18 6 2.8774 -0.7267 3.4626 19 8 2.7539 -0.2011 4.5435 20 6 2.7832 0.0716 2.1821 21 1 2.2815 1.0189 2.3793 22 6 4.1894 0.3402 1.6421 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.7673 -1.7752 -1.1972 27 1 1.5915 -0.2733 -2.1360 28 1 4.0891 -2.4769 -3.8729 29 1 2.5087 -3.7461 2.2776 30 1 1.2157 -2.9260 3.1816 31 1 4.6390 -0.5979 1.3168 32 1 4.1293 1.0266 0.7975 33 1 4.8016 0.7834 2.4276 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695911141.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:25 Heat of formation + Delta-G solvation = -100.775324 kcal Electronic energy + Delta-G solvation = -18606.642133 eV Core-core repulsion = 15633.499172 eV Total energy + Delta-G solvation = -2973.142961 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.17144 -39.09584 -37.02796 -36.03445 -33.34012 -32.03633 -30.06706 -28.04266 -27.33146 -24.64967 -23.35476 -22.61371 -20.47779 -18.41757 -18.11854 -16.76407 -16.38217 -16.32714 -15.59529 -14.83994 -14.69682 -14.20731 -14.05765 -13.57607 -13.08136 -12.86529 -12.54433 -12.39281 -12.26291 -11.77811 -11.60924 -11.43950 -11.15654 -10.96188 -10.77880 -10.57700 -10.50400 -10.04915 -9.55875 -9.14997 -8.76372 -8.23982 -8.14084 -5.95682 -3.96780 1.50315 2.84859 2.89673 3.29712 3.31817 3.37023 3.37525 4.01219 4.45425 4.56593 4.94452 5.08933 5.18183 5.28915 5.40279 5.73449 5.77858 5.92233 5.95757 6.03009 6.24279 6.50253 6.60844 6.74152 6.81304 6.87112 7.15940 7.58641 7.79362 7.93558 8.16075 8.42856 8.50180 9.11470 9.64870 11.15602 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.023504 B = 0.009963 C = 0.008665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.983867 B = 2809.627343 C = 3230.562547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 H 0.075 0.925 4 C -0.003 4.003 5 C -0.521 4.521 6 H 0.063 0.937 7 C 0.059 3.941 8 N -0.890 5.890 9 Si 0.881 3.119 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.578 5.578 14 C 0.483 3.517 15 O -0.504 6.504 16 C 0.069 3.931 17 O -0.372 6.372 18 C 0.492 3.508 19 O -0.443 6.443 20 C 0.107 3.893 21 H 0.114 0.886 22 C -0.160 4.160 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.038 0.962 26 H 0.066 0.934 27 H 0.018 0.982 28 H 0.258 0.742 29 H 0.143 0.857 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.796 2.820 10.563 11.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.045 3.955 3 H 0.093 0.907 4 C -0.041 4.041 5 C -0.559 4.559 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.529 5.529 9 Si 0.709 3.291 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.313 5.313 14 C 0.268 3.732 15 O -0.379 6.379 16 C -0.007 4.007 17 O -0.293 6.293 18 C 0.331 3.669 19 O -0.321 6.321 20 C 0.001 3.999 21 H 0.131 0.869 22 C -0.218 4.218 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.036 0.964 28 H 0.068 0.932 29 H 0.161 0.839 30 H 0.121 0.879 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.991 2.565 10.558 11.269 hybrid contribution 1.197 0.109 -0.247 1.227 sum -1.794 2.674 10.310 10.801 Atomic orbital electron populations 1.22183 0.96535 1.02902 1.00551 1.21492 0.92163 0.96018 0.85845 0.90704 1.19724 0.95748 0.99359 0.89230 1.21431 0.92257 1.28706 1.13546 0.91854 1.24968 0.97694 0.95533 0.96017 1.69979 1.35186 1.30793 1.16982 0.86776 0.86692 0.78319 0.77279 1.20821 1.21360 1.19946 1.47611 1.52993 1.08662 1.22056 1.20311 0.81214 0.82513 0.89117 1.90752 1.41622 1.67114 1.38420 1.23607 0.91576 0.96224 0.89285 1.86724 1.48361 1.21114 1.73079 1.23399 0.70687 0.82637 0.90218 1.90628 1.38730 1.71375 1.31401 1.21784 0.96568 0.95728 0.85832 0.86863 1.22353 0.92729 1.04919 1.01823 0.91816 0.91298 0.94261 0.91628 0.96365 0.93201 0.83935 0.87939 0.90025 0.89033 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.15 37.16 0.34 -2.41 16 2 C 0.15 2.77 2.39 -67.93 -0.16 2.61 16 3 H 0.07 1.32 7.78 -51.93 -0.40 0.92 16 4 C 0.00 -0.08 4.25 -27.88 -0.12 -0.20 16 5 C -0.52 -13.62 8.79 -34.44 -0.30 -13.92 16 6 H 0.06 1.52 3.95 -52.48 -0.21 1.31 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 9 Si 0.88 21.08 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.58 -10.09 2.19 -160.30 -0.35 -10.44 16 14 C 0.48 8.69 7.03 -11.66 -0.08 8.61 16 15 O -0.50 -10.92 12.67 5.56 0.07 -10.85 16 16 C 0.07 0.95 7.19 35.77 0.26 1.20 16 17 O -0.37 -5.64 10.72 -42.04 -0.45 -6.09 16 18 C 0.49 7.48 6.84 36.25 0.25 7.73 16 19 O -0.44 -7.37 17.96 -18.59 -0.33 -7.70 16 20 C 0.11 1.58 3.20 -68.98 -0.22 1.36 16 21 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 22 C -0.16 -2.42 7.90 37.16 0.29 -2.13 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.07 1.27 6.46 -51.93 -0.34 0.94 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.84 5.39 -51.93 -0.28 1.56 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.14 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.08 1.43 7.85 -51.93 -0.41 1.02 16 32 H 0.09 1.44 6.47 -51.93 -0.34 1.11 16 33 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 LS Contribution 273.05 15.07 4.11 4.11 Total: -1.00 -31.93 273.05 -5.14 -37.07 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -4.06 Total: -0.78 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 0.16 Total: 4.39 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.38 Total: -36.22 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.71 Total: -24.64 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.93 -5.14 -37.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695911141.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.703 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds