Wall clock time and date at job start Mon Mar 30 2020 04:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46830 * 2 1 4 4 C 1.52999 * 109.46899 * 239.99990 * 2 1 3 5 5 C 1.50701 * 109.47102 * 173.98907 * 4 2 1 6 6 H 1.08007 * 119.99629 * 354.57376 * 5 4 2 7 7 C 1.37871 * 120.00304 * 174.57492 * 5 4 2 8 8 N 1.31514 * 120.00015 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00110 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47372 * 89.99876 * 9 7 5 11 11 H 1.48498 * 109.47273 * 209.99867 * 9 7 5 12 12 H 1.48504 * 109.47028 * 329.99691 * 9 7 5 13 13 N 1.46495 * 109.46671 * 120.00409 * 2 1 3 14 14 C 1.33805 * 118.71012 * 63.87149 * 13 2 1 15 15 O 1.21279 * 118.34576 * 4.64924 * 14 13 2 16 16 C 1.50212 * 123.27430 * 184.61626 * 14 13 2 17 17 O 1.45471 * 109.96479 * 343.00817 * 16 14 13 18 18 C 1.35269 * 114.66323 * 42.96254 * 17 16 14 19 19 O 1.20818 * 121.44121 * 121.37883 * 18 17 16 20 20 C 1.46232 * 118.62418 * 243.95262 * 13 2 1 21 21 H 1.08992 * 109.53302 * 45.90745 * 20 13 2 22 22 C 1.53008 * 109.52926 * 285.76496 * 20 13 2 23 23 H 1.09000 * 109.46650 * 60.00002 * 1 2 3 24 24 H 1.08998 * 109.47105 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47297 * 299.99749 * 1 2 3 26 26 H 1.08995 * 109.47853 * 293.98963 * 4 2 1 27 27 H 1.09006 * 109.47131 * 53.99192 * 4 2 1 28 28 H 0.97002 * 119.99768 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.39004 * 222.85136 * 16 14 13 30 30 H 1.09006 * 109.39040 * 103.16090 * 16 14 13 31 31 H 1.09002 * 109.46945 * 307.87989 * 22 20 13 32 32 H 1.08997 * 109.47060 * 67.88671 * 22 20 13 33 33 H 1.09005 * 109.46938 * 187.88341 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5397 -0.5937 -1.3259 6 1 4.0667 0.0201 -0.6104 7 6 4.2389 -1.2605 -2.3095 8 7 3.5971 -2.0075 -3.1811 9 14 6.0978 -1.1030 -2.4041 10 1 6.7273 -2.1674 -1.5819 11 1 6.5354 -1.2443 -3.8161 12 1 6.5086 0.2281 -1.8894 13 7 2.0183 -0.6907 1.1961 14 6 1.7452 -1.9923 1.3432 15 8 1.1778 -2.5674 0.4387 16 6 2.1070 -2.7765 2.5722 17 8 3.1055 -2.0549 3.3458 18 6 2.8774 -0.7267 3.4626 19 8 2.7539 -0.2011 4.5435 20 6 2.7832 0.0716 2.1821 21 1 2.2815 1.0189 2.3793 22 6 4.1894 0.3402 1.6421 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.7673 -1.7752 -1.1972 27 1 1.5915 -0.2733 -2.1360 28 1 4.0891 -2.4769 -3.8729 29 1 2.5087 -3.7461 2.2776 30 1 1.2157 -2.9260 3.1816 31 1 4.6390 -0.5979 1.3168 32 1 4.1293 1.0266 0.7975 33 1 4.8016 0.7834 2.4276 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695911141.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:25 Heat of formation + Delta-G solvation = -121.683135 kcal Electronic energy + Delta-G solvation = -18607.548764 eV Core-core repulsion = 15633.499172 eV Total energy + Delta-G solvation = -2974.049591 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.45307 -40.45351 -38.25768 -37.48991 -35.13411 -33.71596 -31.45744 -29.47667 -28.93322 -25.92853 -25.07880 -24.12883 -21.92476 -19.74656 -19.42030 -18.37034 -18.01638 -17.55191 -16.95258 -16.52867 -16.23159 -15.69463 -15.35377 -14.79788 -14.65014 -14.26419 -14.08134 -13.83233 -13.66775 -13.39940 -13.14172 -12.98466 -12.68392 -12.52865 -12.45851 -12.24999 -11.94617 -11.45962 -11.27165 -10.98762 -10.63007 -10.11242 -9.65145 -8.07738 -6.14093 0.32201 1.40608 1.41141 1.48085 1.50194 1.66141 2.06086 2.45144 2.81501 3.27020 3.35409 3.85846 3.98001 4.07247 4.19439 4.35268 4.48578 4.52808 4.70218 4.75629 4.88321 5.18049 5.22400 5.25572 5.37221 5.50743 5.65641 5.88226 5.96931 6.06742 6.35277 6.46405 7.00995 7.14250 7.52006 9.04732 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.023504 B = 0.009963 C = 0.008665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.983867 B = 2809.627343 C = 3230.562547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.152 3.848 3 H 0.095 0.905 4 C -0.001 4.001 5 C -0.518 4.518 6 H 0.086 0.914 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.946 3.054 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.253 1.253 13 N -0.581 5.581 14 C 0.472 3.528 15 O -0.550 6.550 16 C 0.077 3.923 17 O -0.378 6.378 18 C 0.501 3.499 19 O -0.455 6.455 20 C 0.108 3.892 21 H 0.145 0.855 22 C -0.158 4.158 23 H 0.066 0.934 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.029 0.971 27 H -0.012 1.012 28 H 0.255 0.745 29 H 0.158 0.842 30 H 0.139 0.861 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 4.195 12.728 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.050 3.950 3 H 0.113 0.887 4 C -0.038 4.038 5 C -0.556 4.556 6 H 0.104 0.896 7 C -0.200 4.200 8 N -0.580 5.580 9 Si 0.772 3.228 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.177 1.177 13 N -0.315 5.315 14 C 0.259 3.741 15 O -0.428 6.428 16 C 0.002 3.998 17 O -0.299 6.299 18 C 0.340 3.660 19 O -0.334 6.334 20 C 0.003 3.997 21 H 0.163 0.837 22 C -0.216 4.216 23 H 0.085 0.915 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.047 0.953 27 H 0.006 0.994 28 H 0.063 0.937 29 H 0.175 0.825 30 H 0.157 0.843 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.212 3.970 12.762 13.547 hybrid contribution 0.928 -0.318 -0.905 1.335 sum -1.283 3.652 11.858 12.474 Atomic orbital electron populations 1.22078 0.94846 1.02016 1.02324 1.21240 0.93572 0.96065 0.84139 0.88677 1.19564 0.95343 0.97731 0.91173 1.21975 0.93196 1.27527 1.12939 0.89614 1.25872 1.02478 0.95635 0.96063 1.70155 1.37034 1.32610 1.18157 0.85735 0.81078 0.79166 0.76843 1.20667 1.21972 1.17680 1.47672 1.52965 1.08912 1.21939 1.21122 0.80309 0.82713 0.89925 1.90749 1.43682 1.68049 1.40356 1.23722 0.92882 0.95438 0.87756 1.86724 1.48848 1.21300 1.73017 1.23326 0.70118 0.82560 0.89989 1.90637 1.39483 1.71565 1.31729 1.21999 0.96366 0.96519 0.84773 0.83707 1.22291 0.93201 1.03511 1.02609 0.91479 0.93520 0.90976 0.95263 0.99417 0.93652 0.82494 0.84297 0.92686 0.89609 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.02 9.15 71.98 0.66 -4.37 16 2 C 0.15 5.60 2.39 44.99 0.11 5.71 16 3 H 0.10 3.11 7.78 -2.39 -0.02 3.10 16 4 C 0.00 -0.03 4.25 29.85 0.13 0.09 16 5 C -0.52 -27.11 8.79 25.60 0.22 -26.89 16 6 H 0.09 3.99 3.95 -2.91 -0.01 3.98 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 8 N -0.94 -57.77 13.29 21.45 0.28 -57.48 16 9 Si 0.95 43.34 29.54 68.60 2.03 45.36 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 13 N -0.58 -19.24 2.19 -780.01 -1.71 -20.95 16 14 C 0.47 16.56 7.03 87.66 0.62 17.18 16 15 O -0.55 -24.33 12.67 -3.02 -0.04 -24.37 16 16 C 0.08 1.94 7.19 71.08 0.51 2.45 16 17 O -0.38 -10.43 10.72 -62.08 -0.67 -11.10 16 18 C 0.50 13.64 6.84 71.39 0.49 14.13 16 19 O -0.46 -13.62 17.96 21.84 0.39 -13.23 16 20 C 0.11 2.85 3.20 44.45 0.14 2.99 16 21 H 0.15 2.97 8.14 -2.39 -0.02 2.95 16 22 C -0.16 -4.30 7.90 71.98 0.57 -3.73 16 23 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.05 1.73 6.46 -2.39 -0.02 1.71 16 25 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.03 1.71 5.39 -2.39 -0.01 1.70 16 27 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 28 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.16 3.52 8.14 -2.38 -0.02 3.50 16 30 H 0.14 2.53 8.14 -2.38 -0.02 2.51 16 31 H 0.05 1.80 7.85 -2.39 -0.02 1.78 16 32 H 0.09 2.44 6.47 -2.39 -0.02 2.42 16 33 H 0.09 1.97 8.13 -2.38 -0.02 1.95 16 Total: -1.00 -71.04 273.05 5.32 -65.72 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.12 Total: 8.24 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 3.91 Total: 7.80 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -1.43 Total: -78.44 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -0.31 Total: -48.70 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -71.04 5.32 -65.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695911141.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.960 kcal (2) G-P(sol) polarization free energy of solvation -71.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds