Wall clock time and date at job start Mon Mar 30 2020 04:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47647 * 2 1 4 4 C 1.53003 * 109.47241 * 119.99869 * 2 1 3 5 5 C 1.50696 * 109.47589 * 185.00145 * 4 2 1 6 6 H 1.07999 * 119.99690 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00285 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99708 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00071 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47027 * 59.99964 * 9 7 5 11 11 H 1.48498 * 109.47116 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47195 * 300.00121 * 9 7 5 13 13 N 1.46505 * 109.47384 * 239.99593 * 2 1 3 14 14 C 1.33696 * 118.62351 * 299.98225 * 13 2 1 15 15 O 1.21276 * 118.38382 * 4.69198 * 14 13 2 16 16 C 1.50214 * 123.24165 * 184.67210 * 14 13 2 17 17 O 1.45473 * 109.95961 * 342.95160 * 16 14 13 18 18 C 1.35266 * 114.66351 * 42.96100 * 17 16 14 19 19 O 1.20831 * 121.44042 * 121.37811 * 18 17 16 20 20 C 1.46228 * 118.62891 * 119.99899 * 13 2 1 21 21 H 1.09006 * 109.58669 * 45.87701 * 20 13 2 22 22 C 1.52997 * 109.53167 * 285.69346 * 20 13 2 23 23 H 1.09002 * 109.46947 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46578 * 300.00636 * 1 2 3 25 25 H 1.09000 * 109.46944 * 60.00104 * 1 2 3 26 26 H 1.09004 * 109.46589 * 304.99750 * 4 2 1 27 27 H 1.08995 * 109.47379 * 64.99590 * 4 2 1 28 28 H 0.96999 * 119.99785 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.39058 * 222.80306 * 16 14 13 30 30 H 1.08995 * 109.38796 * 103.10144 * 16 14 13 31 31 H 1.09002 * 109.47153 * 300.36557 * 22 20 13 32 32 H 1.09001 * 109.46832 * 180.36748 * 22 20 13 33 33 H 1.09004 * 109.47261 * 60.36729 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0862 0.5393 7 6 4.2303 -1.1926 2.3585 8 7 3.5762 -1.8360 3.3007 9 14 6.0920 -1.0614 2.4368 10 1 6.4854 0.3694 2.4953 11 1 6.5869 -1.7602 3.6501 12 1 6.6838 -1.6884 1.2277 13 7 2.0184 -0.6907 -1.1961 14 6 1.6790 -1.9707 -1.3800 15 8 0.9102 -2.4820 -0.5937 16 6 2.2026 -2.8069 -2.5128 17 8 2.7617 -1.9490 -3.5461 18 6 3.5194 -0.9284 -3.0834 19 8 4.6758 -0.8032 -3.4107 20 6 2.8570 0.0486 -2.1387 21 1 3.6208 0.6019 -1.5922 22 6 1.9909 1.0249 -2.9371 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6054 -0.2616 2.1370 27 1 1.7517 -1.7714 1.2057 28 1 4.0605 -2.2421 4.0365 29 1 1.3883 -3.3966 -2.9337 30 1 2.9775 -3.4766 -2.1401 31 1 1.2259 0.4709 -3.4811 32 1 2.6159 1.5707 -3.6439 33 1 1.5138 1.7288 -2.2550 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695911148.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:27 Heat of formation + Delta-G solvation = -128.146371 kcal Electronic energy + Delta-G solvation = -18508.703408 eV Core-core repulsion = 15534.373550 eV Total energy + Delta-G solvation = -2974.329858 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.47732 -40.48325 -38.27871 -37.49728 -35.31572 -33.68775 -31.42337 -29.44591 -29.09710 -25.88241 -25.12533 -24.23057 -21.91051 -19.75752 -19.46882 -18.52104 -17.95950 -17.60675 -17.04633 -16.63218 -16.14835 -15.85338 -15.41483 -14.84225 -14.63908 -14.32007 -14.04093 -13.87802 -13.60233 -13.42956 -13.11065 -13.03739 -12.64693 -12.56362 -12.43746 -12.35270 -12.06931 -11.81215 -11.25043 -11.11196 -10.66708 -10.31658 -9.67887 -8.18932 -6.28227 0.29574 1.36168 1.37260 1.42218 1.44712 1.68414 2.04966 2.37452 2.76467 3.15086 3.32690 3.85372 3.94861 4.08186 4.20164 4.34030 4.51249 4.53504 4.70045 4.73606 4.87820 5.14360 5.17859 5.20276 5.39352 5.46457 5.53716 5.78373 5.92186 5.95528 6.21035 6.41345 6.88102 7.04232 7.39345 8.92437 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.021215 B = 0.010212 C = 0.008630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.508820 B = 2741.213665 C = 3243.663024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.154 3.846 3 H 0.094 0.906 4 C 0.011 3.989 5 C -0.525 4.525 6 H 0.060 0.940 7 C 0.003 3.997 8 N -0.931 5.931 9 Si 0.950 3.050 10 H -0.263 1.263 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.579 5.579 14 C 0.476 3.524 15 O -0.553 6.553 16 C 0.076 3.924 17 O -0.371 6.371 18 C 0.495 3.505 19 O -0.462 6.462 20 C 0.102 3.898 21 H 0.118 0.882 22 C -0.149 4.149 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.072 0.928 26 H -0.002 1.002 27 H 0.009 0.991 28 H 0.260 0.740 29 H 0.179 0.821 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.069 4.265 -13.635 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.052 3.948 3 H 0.112 0.888 4 C -0.027 4.027 5 C -0.563 4.563 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.775 3.225 10 H -0.187 1.187 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.312 5.312 14 C 0.263 3.737 15 O -0.432 6.432 16 C 0.000 4.000 17 O -0.292 6.292 18 C 0.334 3.666 19 O -0.341 6.341 20 C -0.003 4.003 21 H 0.136 0.864 22 C -0.207 4.207 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.017 0.983 27 H 0.028 0.972 28 H 0.069 0.931 29 H 0.196 0.804 30 H 0.132 0.868 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.881 3.935 -13.435 14.528 hybrid contribution 1.099 -0.250 0.837 1.404 sum -2.782 3.686 -12.598 13.418 Atomic orbital electron populations 1.22139 0.94297 1.02879 1.02117 1.21219 0.94163 0.95850 0.83586 0.88781 1.19388 0.94789 0.96353 0.92148 1.21501 0.93197 1.33787 1.07783 0.92213 1.25844 1.02762 0.95232 0.95681 1.70103 1.37327 1.36969 1.12715 0.85731 0.80536 0.78886 0.77311 1.18719 1.21198 1.20025 1.47632 1.49546 1.11007 1.23051 1.21001 0.82055 0.82816 0.87785 1.90713 1.36053 1.70410 1.46046 1.23727 1.01750 0.90405 0.84079 1.86709 1.64725 1.41950 1.35775 1.23488 0.83767 0.81771 0.77532 1.90646 1.15355 1.74454 1.53614 1.22025 0.95280 0.93239 0.89802 0.86399 1.22135 0.99836 0.98169 1.00526 0.92448 0.91857 0.90873 0.98339 0.97244 0.93073 0.80373 0.86788 0.90673 0.88831 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.14 9.09 71.98 0.65 -4.49 16 2 C 0.15 5.77 2.30 44.99 0.10 5.87 16 3 H 0.09 3.17 7.84 -2.39 -0.02 3.15 16 4 C 0.01 0.56 4.29 29.85 0.13 0.69 16 5 C -0.52 -28.51 8.84 25.60 0.23 -28.28 16 6 H 0.06 3.05 7.31 -2.91 -0.02 3.03 16 7 C 0.00 0.15 5.46 84.65 0.46 0.61 16 8 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 9 Si 0.95 44.40 29.54 68.60 2.03 46.42 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 13 N -0.58 -19.54 2.17 -780.16 -1.69 -21.23 16 14 C 0.48 16.70 6.99 87.67 0.61 17.31 16 15 O -0.55 -23.59 12.66 -3.02 -0.04 -23.62 16 16 C 0.08 1.95 7.19 71.08 0.51 2.46 16 17 O -0.37 -10.02 10.72 -62.04 -0.66 -10.69 16 18 C 0.50 14.90 6.85 71.39 0.49 15.39 16 19 O -0.46 -16.32 17.96 21.80 0.39 -15.93 16 20 C 0.10 2.81 3.20 44.45 0.14 2.95 16 21 H 0.12 3.42 7.71 -2.38 -0.02 3.40 16 22 C -0.15 -2.79 9.35 71.98 0.67 -2.12 16 23 H 0.06 2.18 5.83 -2.39 -0.01 2.17 16 24 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 27 H 0.01 0.54 6.04 -2.39 -0.01 0.53 16 28 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 29 H 0.18 3.24 8.14 -2.39 -0.02 3.22 16 30 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.55 7.98 -2.38 -0.02 1.53 16 Total: -1.00 -71.47 279.23 5.42 -66.05 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.11 Total: 5.34 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 4.00 Total: 10.39 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -1.41 Total: -77.97 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.31 Total: -50.24 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -71.47 5.42 -66.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695911148.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.097 kcal (2) G-P(sol) polarization free energy of solvation -71.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds