Wall clock time and date at job start Mon Mar 30 2020 04:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.50703 * 109.46912 * 175.00090 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47171 * 89.99544 * 9 7 5 11 11 H 1.48500 * 109.46632 * 209.99795 * 9 7 5 12 12 H 1.48494 * 109.47053 * 329.99231 * 9 7 5 13 13 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 14 14 C 1.33692 * 118.62912 * 59.73116 * 13 2 1 15 15 O 1.21286 * 118.37910 * 355.34756 * 14 13 2 16 16 C 1.50244 * 123.21548 * 175.07566 * 14 13 2 17 17 O 1.45471 * 109.90777 * 17.53781 * 16 14 13 18 18 C 1.35273 * 114.66357 * 316.82189 * 17 16 14 19 19 O 1.20825 * 121.44551 * 238.58166 * 18 17 16 20 20 C 1.46227 * 118.62120 * 239.99670 * 13 2 1 21 21 H 1.08992 * 109.53900 * 314.06923 * 20 13 2 22 22 C 1.53003 * 109.53246 * 74.21981 * 20 13 2 23 23 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 24 24 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 25 25 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 27 27 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 28 28 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.58931 * 257.29533 * 16 14 13 30 30 H 1.08995 * 109.16563 * 137.50972 * 16 14 13 31 31 H 1.09000 * 109.47492 * 59.99288 * 22 20 13 32 32 H 1.08996 * 109.47266 * 179.97438 * 22 20 13 33 33 H 1.09003 * 109.46353 * 299.99698 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0862 -0.5392 7 6 4.2303 -1.1927 -2.3584 8 7 3.5763 -1.8370 -3.3001 9 14 6.0920 -1.0615 -2.4367 10 1 6.6999 -2.2148 -1.7256 11 1 6.5294 -1.0686 -3.8558 12 1 6.5267 0.2031 -1.7911 13 7 2.0184 -0.6907 1.1962 14 6 1.6742 -1.9690 1.3831 15 8 0.9020 -2.4787 0.5989 16 6 2.2018 -2.8066 2.5134 17 8 2.7609 -1.9486 3.5466 18 6 3.5190 -0.9283 3.0839 19 8 4.6751 -0.8028 3.4119 20 6 2.8570 0.0486 2.1386 21 1 3.6209 0.6007 1.5913 22 6 1.9912 1.0267 2.9354 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.7515 -1.7715 -1.2057 27 1 1.6053 -0.2617 -2.1370 28 1 4.0605 -2.2431 -4.0360 29 1 2.9766 -3.4766 2.1410 30 1 1.3862 -3.3948 2.9338 31 1 1.2293 0.4734 3.4845 32 1 2.6172 1.5769 3.6379 33 1 1.5103 1.7262 2.2516 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695911150.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:29 Heat of formation + Delta-G solvation = -107.079670 kcal Electronic energy + Delta-G solvation = -18506.498340 eV Core-core repulsion = 15533.082002 eV Total energy + Delta-G solvation = -2973.416338 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.16919 -39.08564 -37.00211 -36.04883 -33.50682 -31.96827 -30.14943 -28.00816 -27.42997 -24.70663 -23.35279 -22.73459 -20.42077 -18.41532 -18.14266 -16.80712 -16.40018 -16.21893 -15.68683 -14.92784 -14.59638 -14.37013 -14.15517 -13.59589 -12.98240 -12.92790 -12.73439 -12.47268 -12.27331 -11.84532 -11.72206 -11.41034 -11.23976 -10.99417 -10.72215 -10.57409 -10.51212 -10.26649 -9.61710 -9.13624 -8.96929 -8.35929 -8.19170 -6.02465 -4.05484 1.55180 2.77122 2.98091 3.28760 3.31439 3.35897 3.38156 3.99103 4.42129 4.54951 4.90181 5.05027 5.20212 5.26754 5.33459 5.53673 5.65369 5.75815 5.93978 6.00922 6.03747 6.24398 6.61179 6.75076 6.82300 6.92877 7.21414 7.54469 7.74901 7.83662 8.03746 8.34393 8.42973 9.00700 9.57904 11.08230 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.010210 C = 0.008627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.875281 B = 2741.780268 C = 3244.867451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.147 3.853 3 H 0.076 0.924 4 C 0.005 3.995 5 C -0.520 4.520 6 H 0.050 0.950 7 C 0.060 3.940 8 N -0.889 5.889 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.575 5.575 14 C 0.487 3.513 15 O -0.514 6.514 16 C 0.067 3.933 17 O -0.377 6.377 18 C 0.492 3.508 19 O -0.434 6.434 20 C 0.103 3.897 21 H 0.124 0.876 22 C -0.157 4.157 23 H 0.038 0.962 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.027 0.973 28 H 0.260 0.740 29 H 0.109 0.891 30 H 0.141 0.859 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.433 3.203 11.816 13.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.046 3.954 3 H 0.094 0.906 4 C -0.032 4.032 5 C -0.558 4.558 6 H 0.068 0.932 7 C -0.141 4.141 8 N -0.528 5.528 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.310 5.310 14 C 0.273 3.727 15 O -0.391 6.391 16 C -0.009 4.009 17 O -0.298 6.298 18 C 0.330 3.670 19 O -0.311 6.311 20 C -0.003 4.003 21 H 0.142 0.858 22 C -0.215 4.215 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.126 0.874 30 H 0.158 0.842 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.248 2.858 11.586 12.667 hybrid contribution 1.238 0.087 -0.270 1.270 sum -3.010 2.945 11.316 12.074 Atomic orbital electron populations 1.22270 0.96103 1.03838 1.00289 1.21479 0.92721 0.95910 0.85322 0.90617 1.19562 0.95606 0.98019 0.90039 1.21119 0.92001 1.34680 1.08022 0.93187 1.24972 0.98043 0.95338 0.95792 1.69965 1.35369 1.35569 1.11915 0.86705 0.86204 0.78525 0.77275 1.20756 1.21137 1.19845 1.47574 1.49402 1.10829 1.23166 1.20266 0.82610 0.82633 0.87142 1.90719 1.34194 1.69728 1.44468 1.23604 1.00537 0.91413 0.85301 1.86704 1.65118 1.42135 1.35868 1.23300 0.84124 0.81619 0.78003 1.90649 1.14270 1.73876 1.52270 1.21841 0.95083 0.93196 0.90166 0.85841 1.22137 1.00050 0.98894 1.00458 0.94278 0.92194 0.90111 0.93613 0.95515 0.92985 0.87353 0.84171 0.91411 0.90814 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 9.08 37.16 0.34 -2.51 16 2 C 0.15 2.82 2.29 -67.93 -0.16 2.66 16 3 H 0.08 1.35 7.83 -51.93 -0.41 0.95 16 4 C 0.01 0.13 4.29 -27.88 -0.12 0.01 16 5 C -0.52 -14.08 8.84 -34.44 -0.30 -14.38 16 6 H 0.05 1.30 7.31 -52.49 -0.38 0.92 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.58 -10.12 2.17 -160.32 -0.35 -10.47 16 14 C 0.49 8.77 6.99 -11.69 -0.08 8.68 16 15 O -0.51 -10.85 12.67 5.55 0.07 -10.78 16 16 C 0.07 0.94 7.19 35.79 0.26 1.19 16 17 O -0.38 -5.55 10.72 -42.05 -0.45 -6.00 16 18 C 0.49 7.88 6.85 36.25 0.25 8.13 16 19 O -0.43 -7.98 17.96 -18.59 -0.33 -8.31 16 20 C 0.10 1.54 3.20 -68.99 -0.22 1.32 16 21 H 0.12 1.92 7.71 -51.93 -0.40 1.52 16 22 C -0.16 -1.76 9.36 37.16 0.35 -1.41 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.08 1.54 5.80 -51.93 -0.30 1.24 16 26 H 0.05 1.29 6.06 -51.93 -0.31 0.97 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 30 H 0.14 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.84 7.96 -51.93 -0.41 0.43 16 LS Contribution 279.18 15.07 4.21 4.21 Total: -1.00 -32.45 279.18 -5.24 -37.69 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -4.31 Total: -2.39 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 0.21 Total: 5.31 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.39 Total: -36.33 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.71 Total: -25.10 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.45 -5.24 -37.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695911150.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.386 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds