Wall clock time and date at job start Mon Mar 30 2020 04:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.50703 * 109.46912 * 175.00090 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47171 * 89.99544 * 9 7 5 11 11 H 1.48500 * 109.46632 * 209.99795 * 9 7 5 12 12 H 1.48494 * 109.47053 * 329.99231 * 9 7 5 13 13 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 14 14 C 1.33692 * 118.62912 * 59.73116 * 13 2 1 15 15 O 1.21286 * 118.37910 * 355.34756 * 14 13 2 16 16 C 1.50244 * 123.21548 * 175.07566 * 14 13 2 17 17 O 1.45471 * 109.90777 * 17.53781 * 16 14 13 18 18 C 1.35273 * 114.66357 * 316.82189 * 17 16 14 19 19 O 1.20825 * 121.44551 * 238.58166 * 18 17 16 20 20 C 1.46227 * 118.62120 * 239.99670 * 13 2 1 21 21 H 1.08992 * 109.53900 * 314.06923 * 20 13 2 22 22 C 1.53003 * 109.53246 * 74.21981 * 20 13 2 23 23 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 24 24 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 25 25 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 27 27 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 28 28 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.58931 * 257.29533 * 16 14 13 30 30 H 1.08995 * 109.16563 * 137.50972 * 16 14 13 31 31 H 1.09000 * 109.47492 * 59.99288 * 22 20 13 32 32 H 1.08996 * 109.47266 * 179.97438 * 22 20 13 33 33 H 1.09003 * 109.46353 * 299.99698 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0862 -0.5392 7 6 4.2303 -1.1927 -2.3584 8 7 3.5763 -1.8370 -3.3001 9 14 6.0920 -1.0615 -2.4367 10 1 6.6999 -2.2148 -1.7256 11 1 6.5294 -1.0686 -3.8558 12 1 6.5267 0.2031 -1.7911 13 7 2.0184 -0.6907 1.1962 14 6 1.6742 -1.9690 1.3831 15 8 0.9020 -2.4787 0.5989 16 6 2.2018 -2.8066 2.5134 17 8 2.7609 -1.9486 3.5466 18 6 3.5190 -0.9283 3.0839 19 8 4.6751 -0.8028 3.4119 20 6 2.8570 0.0486 2.1386 21 1 3.6209 0.6007 1.5913 22 6 1.9912 1.0267 2.9354 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.7515 -1.7715 -1.2057 27 1 1.6053 -0.2617 -2.1370 28 1 4.0605 -2.2431 -4.0360 29 1 2.9766 -3.4766 2.1410 30 1 1.3862 -3.3948 2.9338 31 1 1.2293 0.4734 3.4845 32 1 2.6172 1.5769 3.6379 33 1 1.5103 1.7262 2.2516 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695911150.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:28 Heat of formation + Delta-G solvation = -128.161806 kcal Electronic energy + Delta-G solvation = -18507.412530 eV Core-core repulsion = 15533.082002 eV Total energy + Delta-G solvation = -2974.330528 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.47532 -40.48175 -38.27773 -37.49645 -35.31590 -33.68668 -31.42255 -29.44791 -29.09359 -25.88243 -25.12838 -24.23053 -21.90946 -19.75428 -19.47068 -18.52314 -17.95907 -17.60221 -17.04766 -16.62976 -16.14872 -15.85566 -15.41475 -14.83883 -14.64428 -14.31509 -14.03752 -13.88134 -13.60487 -13.42599 -13.12708 -13.04117 -12.64719 -12.58231 -12.39570 -12.35581 -12.07158 -11.81103 -11.24887 -11.10337 -10.67297 -10.31773 -9.67904 -8.19134 -6.28345 0.29796 1.35293 1.36522 1.41879 1.46181 1.68730 2.04885 2.37333 2.76560 3.15021 3.32792 3.85350 3.94939 4.08521 4.20163 4.34061 4.51202 4.53468 4.70001 4.73528 4.87743 5.14263 5.17811 5.20255 5.39510 5.46602 5.53843 5.78386 5.91969 5.95684 6.20981 6.41383 6.88159 7.04200 7.39300 8.92423 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.010210 C = 0.008627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.875281 B = 2741.780268 C = 3244.867451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.154 3.846 3 H 0.094 0.906 4 C 0.011 3.989 5 C -0.523 4.523 6 H 0.060 0.940 7 C 0.002 3.998 8 N -0.931 5.931 9 Si 0.949 3.051 10 H -0.281 1.281 11 H -0.283 1.283 12 H -0.259 1.259 13 N -0.579 5.579 14 C 0.476 3.524 15 O -0.553 6.553 16 C 0.076 3.924 17 O -0.371 6.371 18 C 0.495 3.505 19 O -0.462 6.462 20 C 0.102 3.898 21 H 0.118 0.882 22 C -0.149 4.149 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.009 0.991 27 H -0.001 1.001 28 H 0.260 0.740 29 H 0.115 0.885 30 H 0.178 0.822 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.056 4.269 13.658 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.052 3.948 3 H 0.112 0.888 4 C -0.027 4.027 5 C -0.561 4.561 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.775 3.225 10 H -0.207 1.207 11 H -0.209 1.209 12 H -0.183 1.183 13 N -0.312 5.312 14 C 0.263 3.737 15 O -0.432 6.432 16 C 0.000 4.000 17 O -0.292 6.292 18 C 0.335 3.665 19 O -0.340 6.340 20 C -0.003 4.003 21 H 0.136 0.864 22 C -0.207 4.207 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.027 0.973 27 H 0.017 0.983 28 H 0.069 0.931 29 H 0.133 0.867 30 H 0.196 0.804 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.867 3.946 13.463 14.552 hybrid contribution 1.089 -0.262 -0.848 1.405 sum -2.778 3.684 12.615 13.432 Atomic orbital electron populations 1.22146 0.94309 1.02911 1.02105 1.21215 0.94156 0.95849 0.83590 0.88788 1.19390 0.94815 0.96321 0.92154 1.21530 0.93178 1.33683 1.07729 0.92184 1.25845 1.02750 0.95263 0.95687 1.70109 1.37244 1.37014 1.12783 0.85683 0.80619 0.78891 0.77332 1.20699 1.20907 1.18349 1.47630 1.49463 1.11154 1.22995 1.21017 0.82085 0.82825 0.87737 1.90715 1.35943 1.70464 1.46113 1.23737 1.01712 0.90400 0.84107 1.86711 1.64709 1.41967 1.35780 1.23480 0.83762 0.81755 0.77535 1.90645 1.15354 1.74427 1.53605 1.22025 0.95279 0.93236 0.89807 0.86411 1.22135 0.99849 0.98151 1.00545 0.90900 0.91859 0.92407 0.97286 0.98315 0.93083 0.86706 0.80431 0.90679 0.88821 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.15 9.08 71.98 0.65 -4.50 16 2 C 0.15 5.77 2.29 44.99 0.10 5.87 16 3 H 0.09 3.17 7.83 -2.39 -0.02 3.15 16 4 C 0.01 0.56 4.29 29.85 0.13 0.68 16 5 C -0.52 -28.40 8.84 25.60 0.23 -28.18 16 6 H 0.06 3.07 7.31 -2.91 -0.02 3.05 16 7 C 0.00 0.13 5.46 84.65 0.46 0.59 16 8 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 9 Si 0.95 44.38 29.54 68.60 2.03 46.40 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 13 N -0.58 -19.52 2.17 -780.13 -1.69 -21.21 16 14 C 0.48 16.66 6.99 87.68 0.61 17.27 16 15 O -0.55 -23.55 12.67 -3.05 -0.04 -23.59 16 16 C 0.08 1.95 7.19 71.09 0.51 2.46 16 17 O -0.37 -9.99 10.72 -62.12 -0.67 -10.66 16 18 C 0.50 14.86 6.85 71.39 0.49 15.35 16 19 O -0.46 -16.23 17.96 21.82 0.39 -15.84 16 20 C 0.10 2.80 3.20 44.46 0.14 2.94 16 21 H 0.12 3.41 7.71 -2.39 -0.02 3.40 16 22 C -0.15 -2.80 9.36 71.98 0.67 -2.12 16 23 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 24 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.06 2.20 5.80 -2.39 -0.01 2.18 16 26 H 0.01 0.52 6.06 -2.39 -0.01 0.50 16 27 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 28 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.18 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.55 7.96 -2.39 -0.02 1.53 16 Total: -1.00 -71.39 279.18 5.42 -65.97 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.11 Total: 5.30 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 4.00 Total: 10.37 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -1.41 Total: -77.95 kcal Atomic # 8 Polarization: -49.77 SS G_CDS: -0.31 Total: -50.09 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -71.39 5.42 -65.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695911150.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.193 kcal (2) G-P(sol) polarization free energy of solvation -71.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds