Wall clock time and date at job start Mon Mar 30 2020 04:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47634 * 2 1 4 4 C 1.52996 * 109.47314 * 120.00417 * 2 1 3 5 5 C 1.50709 * 109.47271 * 182.80518 * 4 2 1 6 6 H 1.07996 * 119.99607 * 354.79160 * 5 4 2 7 7 C 1.37875 * 119.99779 * 174.78923 * 5 4 2 8 8 N 1.31512 * 120.00422 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99537 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47003 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47015 * 120.00314 * 9 7 5 12 12 H 1.48502 * 109.46951 * 239.99939 * 9 7 5 13 13 N 1.46506 * 109.46700 * 240.00153 * 2 1 3 14 14 C 1.33698 * 118.62949 * 295.23373 * 13 2 1 15 15 O 1.21285 * 118.37443 * 355.33702 * 14 13 2 16 16 C 1.50205 * 123.24477 * 175.34561 * 14 13 2 17 17 O 1.45471 * 109.95933 * 17.05774 * 16 14 13 18 18 C 1.35265 * 114.66563 * 317.03456 * 17 16 14 19 19 O 1.20831 * 121.44165 * 238.62560 * 18 17 16 20 20 C 1.46224 * 118.62782 * 114.97816 * 13 2 1 21 21 H 1.09004 * 109.52813 * 314.06533 * 20 13 2 22 22 C 1.53001 * 109.53807 * 74.28147 * 20 13 2 23 23 H 1.08997 * 109.47635 * 59.99838 * 1 2 3 24 24 H 1.09008 * 109.46603 * 299.99800 * 1 2 3 25 25 H 1.09006 * 109.47159 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47067 * 302.80412 * 4 2 1 27 27 H 1.09002 * 109.47331 * 62.80647 * 4 2 1 28 28 H 0.97001 * 120.00282 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.38807 * 137.20292 * 16 14 13 30 30 H 1.08996 * 109.38977 * 256.90332 * 16 14 13 31 31 H 1.09002 * 109.46437 * 53.85190 * 22 20 13 32 32 H 1.08994 * 109.47806 * 173.85109 * 22 20 13 33 33 H 1.08996 * 109.47320 * 293.86102 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5455 -0.6614 1.2844 6 1 4.0884 -0.2338 0.4545 7 6 4.2295 -1.1524 2.3761 8 7 3.5684 -1.6735 3.3865 9 14 6.0956 -1.0774 2.4201 10 1 6.5953 -0.4500 1.1704 11 1 6.5311 -0.2707 3.5882 12 1 6.6436 -2.4527 2.5363 13 7 2.0182 -0.6906 -1.1963 14 6 1.7600 -1.9953 -1.3330 15 8 1.2067 -2.5721 -0.4207 16 6 2.1214 -2.7820 -2.5604 17 8 3.1057 -2.0532 -3.3454 18 6 2.8615 -0.7284 -3.4676 19 8 2.7237 -0.2101 -4.5504 20 6 2.7627 0.0770 -2.1936 21 1 2.2446 1.0152 -2.3924 22 6 4.1697 0.3694 -1.6684 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.6362 -0.2374 2.1384 27 1 1.7183 -1.7625 1.2243 28 1 4.0497 -2.0193 4.1545 29 1 2.5366 -3.7452 -2.2636 30 1 1.2273 -2.9450 -3.1621 31 1 4.6475 -0.5640 -1.3706 32 1 4.7587 0.8450 -2.4525 33 1 4.1053 1.0352 -0.8079 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695911153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:30 Heat of formation + Delta-G solvation = -99.943960 kcal Electronic energy + Delta-G solvation = -18596.044251 eV Core-core repulsion = 15622.937341 eV Total energy + Delta-G solvation = -2973.106910 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.19565 -39.10876 -37.04042 -36.04740 -33.33720 -32.04379 -30.08570 -28.04474 -27.34676 -24.66605 -23.36833 -22.61599 -20.48231 -18.42935 -18.12972 -16.77877 -16.38416 -16.32595 -15.61933 -14.84502 -14.68430 -14.22133 -14.07154 -13.58391 -13.09694 -12.87190 -12.54047 -12.39420 -12.28344 -11.78466 -11.62369 -11.44912 -11.17381 -10.97398 -10.79651 -10.56462 -10.49814 -10.05394 -9.50563 -9.12123 -8.78827 -8.24725 -8.15232 -5.95839 -3.96076 1.49166 2.84362 2.88624 3.29236 3.31160 3.37634 3.38289 4.00279 4.45832 4.55511 4.93250 5.07810 5.16326 5.27786 5.40922 5.72950 5.76281 5.91669 5.95168 6.01962 6.23835 6.47806 6.60120 6.73231 6.81144 6.86478 7.14861 7.58463 7.79634 7.94935 8.14568 8.44487 8.50604 9.11473 9.65593 11.15866 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.009848 C = 0.008553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.385236 B = 2842.460370 C = 3272.822821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.076 0.924 4 C -0.003 4.003 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.058 3.942 8 N -0.892 5.892 9 Si 0.882 3.118 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.578 5.578 14 C 0.483 3.517 15 O -0.504 6.504 16 C 0.069 3.931 17 O -0.372 6.372 18 C 0.492 3.508 19 O -0.443 6.443 20 C 0.106 3.894 21 H 0.114 0.886 22 C -0.161 4.161 23 H 0.038 0.962 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.025 0.975 27 H 0.059 0.941 28 H 0.257 0.743 29 H 0.143 0.857 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.786 2.420 -10.942 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 H 0.094 0.906 4 C -0.040 4.040 5 C -0.560 4.560 6 H 0.085 0.915 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.710 3.290 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.314 5.314 14 C 0.269 3.731 15 O -0.379 6.379 16 C -0.007 4.007 17 O -0.293 6.293 18 C 0.331 3.669 19 O -0.321 6.321 20 C 0.000 4.000 21 H 0.132 0.868 22 C -0.219 4.219 23 H 0.057 0.943 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.161 0.839 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.979 2.193 -10.922 11.532 hybrid contribution 1.190 0.080 0.254 1.219 sum -1.789 2.273 -10.669 11.054 Atomic orbital electron populations 1.22178 0.96543 1.02826 1.00585 1.21515 0.92156 0.96118 0.85780 0.90627 1.19727 0.95985 0.98797 0.89497 1.21545 0.91874 1.39278 1.03301 0.91456 1.24977 0.97691 0.95704 0.95936 1.69982 1.34980 1.40821 1.07406 0.86705 0.86735 0.77663 0.77882 1.19804 1.21196 1.21216 1.47606 1.53853 1.08246 1.21663 1.20277 0.81101 0.82576 0.89163 1.90752 1.42012 1.67285 1.37866 1.23614 0.92007 0.96029 0.89089 1.86723 1.48758 1.21258 1.72525 1.23359 0.70713 0.82660 0.90216 1.90633 1.38619 1.71663 1.31223 1.21770 0.96826 0.95630 0.85746 0.86780 1.22347 0.92806 1.04665 1.02074 0.94252 0.91775 0.91398 0.95670 0.92327 0.93270 0.83931 0.87938 0.90125 0.91783 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.16 37.16 0.34 -2.39 16 2 C 0.15 2.76 2.42 -67.93 -0.16 2.59 16 3 H 0.08 1.33 7.71 -51.93 -0.40 0.93 16 4 C 0.00 -0.07 4.21 -27.88 -0.12 -0.19 16 5 C -0.52 -13.66 8.80 -34.44 -0.30 -13.97 16 6 H 0.07 1.62 3.49 -52.49 -0.18 1.43 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 9 Si 0.88 21.14 29.54 -169.99 -5.02 16.11 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 N -0.58 -10.03 2.08 -160.42 -0.33 -10.36 16 14 C 0.48 8.62 7.02 -11.71 -0.08 8.54 16 15 O -0.50 -10.83 12.68 5.55 0.07 -10.76 16 16 C 0.07 0.93 7.19 35.77 0.26 1.19 16 17 O -0.37 -5.58 10.72 -42.03 -0.45 -6.03 16 18 C 0.49 7.43 6.83 36.18 0.25 7.67 16 19 O -0.44 -7.33 17.96 -18.60 -0.33 -7.67 16 20 C 0.11 1.56 3.21 -69.06 -0.22 1.33 16 21 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 22 C -0.16 -2.42 7.73 37.16 0.29 -2.13 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 25 H 0.07 1.25 6.52 -51.93 -0.34 0.91 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.63 5.41 -51.93 -0.28 1.35 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 29 H 0.14 1.70 8.14 -51.93 -0.42 1.27 16 30 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.08 1.40 7.48 -51.93 -0.39 1.01 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.46 6.78 -51.93 -0.35 1.11 16 LS Contribution 272.30 15.07 4.10 4.10 Total: -1.00 -32.00 272.30 -5.12 -37.12 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.04 Total: -0.83 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 0.15 Total: 4.16 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.40 Total: -36.21 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.71 Total: -24.46 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.00 -5.12 -37.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695911153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.826 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds