Wall clock time and date at job start Mon Mar 30 2020 04:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47634 * 2 1 4 4 C 1.52996 * 109.47314 * 120.00417 * 2 1 3 5 5 C 1.50709 * 109.47271 * 182.80518 * 4 2 1 6 6 H 1.07996 * 119.99607 * 354.79160 * 5 4 2 7 7 C 1.37875 * 119.99779 * 174.78923 * 5 4 2 8 8 N 1.31512 * 120.00422 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99537 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47003 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47015 * 120.00314 * 9 7 5 12 12 H 1.48502 * 109.46951 * 239.99939 * 9 7 5 13 13 N 1.46506 * 109.46700 * 240.00153 * 2 1 3 14 14 C 1.33698 * 118.62949 * 295.23373 * 13 2 1 15 15 O 1.21285 * 118.37443 * 355.33702 * 14 13 2 16 16 C 1.50205 * 123.24477 * 175.34561 * 14 13 2 17 17 O 1.45471 * 109.95933 * 17.05774 * 16 14 13 18 18 C 1.35265 * 114.66563 * 317.03456 * 17 16 14 19 19 O 1.20831 * 121.44165 * 238.62560 * 18 17 16 20 20 C 1.46224 * 118.62782 * 114.97816 * 13 2 1 21 21 H 1.09004 * 109.52813 * 314.06533 * 20 13 2 22 22 C 1.53001 * 109.53807 * 74.28147 * 20 13 2 23 23 H 1.08997 * 109.47635 * 59.99838 * 1 2 3 24 24 H 1.09008 * 109.46603 * 299.99800 * 1 2 3 25 25 H 1.09006 * 109.47159 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47067 * 302.80412 * 4 2 1 27 27 H 1.09002 * 109.47331 * 62.80647 * 4 2 1 28 28 H 0.97001 * 120.00282 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.38807 * 137.20292 * 16 14 13 30 30 H 1.08996 * 109.38977 * 256.90332 * 16 14 13 31 31 H 1.09002 * 109.46437 * 53.85190 * 22 20 13 32 32 H 1.08994 * 109.47806 * 173.85109 * 22 20 13 33 33 H 1.08996 * 109.47320 * 293.86102 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5455 -0.6614 1.2844 6 1 4.0884 -0.2338 0.4545 7 6 4.2295 -1.1524 2.3761 8 7 3.5684 -1.6735 3.3865 9 14 6.0956 -1.0774 2.4201 10 1 6.5953 -0.4500 1.1704 11 1 6.5311 -0.2707 3.5882 12 1 6.6436 -2.4527 2.5363 13 7 2.0182 -0.6906 -1.1963 14 6 1.7600 -1.9953 -1.3330 15 8 1.2067 -2.5721 -0.4207 16 6 2.1214 -2.7820 -2.5604 17 8 3.1057 -2.0532 -3.3454 18 6 2.8615 -0.7284 -3.4676 19 8 2.7237 -0.2101 -4.5504 20 6 2.7627 0.0770 -2.1936 21 1 2.2446 1.0152 -2.3924 22 6 4.1697 0.3694 -1.6684 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.6362 -0.2374 2.1384 27 1 1.7183 -1.7625 1.2243 28 1 4.0497 -2.0193 4.1545 29 1 2.5366 -3.7452 -2.2636 30 1 1.2273 -2.9450 -3.1621 31 1 4.6475 -0.5640 -1.3706 32 1 4.7587 0.8450 -2.4525 33 1 4.1053 1.0352 -0.8079 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695911153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:30 Heat of formation + Delta-G solvation = -120.874652 kcal Electronic energy + Delta-G solvation = -18596.951874 eV Core-core repulsion = 15622.937341 eV Total energy + Delta-G solvation = -2974.014533 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.46795 -40.45688 -38.25873 -37.49366 -35.13034 -33.72315 -31.46876 -29.46749 -28.94977 -25.93795 -25.08998 -24.12669 -21.92482 -19.74875 -19.42115 -18.36830 -18.01716 -17.55307 -16.95912 -16.53944 -16.21181 -15.69640 -15.36422 -14.79829 -14.66461 -14.26401 -14.06043 -13.82123 -13.69070 -13.39905 -13.16713 -12.99787 -12.73071 -12.52583 -12.44143 -12.23314 -11.92833 -11.44154 -11.26132 -10.95436 -10.65496 -10.11033 -9.66825 -8.08397 -6.13916 0.32159 1.39209 1.41107 1.48790 1.50961 1.66006 2.06213 2.45030 2.81727 3.26511 3.35965 3.85392 3.97169 4.07684 4.19687 4.35620 4.48383 4.51940 4.69873 4.75029 4.88125 5.18665 5.22484 5.24244 5.35959 5.50838 5.65294 5.88693 5.96892 6.05428 6.37095 6.46577 7.00952 7.14537 7.52116 9.04660 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.009848 C = 0.008553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.385236 B = 2842.460370 C = 3272.822821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.151 3.849 3 H 0.095 0.905 4 C 0.001 3.999 5 C -0.520 4.520 6 H 0.090 0.910 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.946 3.054 10 H -0.251 1.251 11 H -0.285 1.285 12 H -0.292 1.292 13 N -0.581 5.581 14 C 0.472 3.528 15 O -0.549 6.549 16 C 0.077 3.923 17 O -0.378 6.378 18 C 0.501 3.499 19 O -0.456 6.456 20 C 0.108 3.892 21 H 0.146 0.854 22 C -0.160 4.160 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.046 0.954 26 H -0.008 1.008 27 H 0.024 0.976 28 H 0.255 0.745 29 H 0.159 0.841 30 H 0.139 0.861 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.010 3.562 -13.259 13.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.049 3.951 3 H 0.113 0.887 4 C -0.036 4.036 5 C -0.558 4.558 6 H 0.108 0.892 7 C -0.202 4.202 8 N -0.582 5.582 9 Si 0.773 3.227 10 H -0.174 1.174 11 H -0.211 1.211 12 H -0.219 1.219 13 N -0.315 5.315 14 C 0.260 3.740 15 O -0.428 6.428 16 C 0.002 3.998 17 O -0.298 6.298 18 C 0.340 3.660 19 O -0.335 6.335 20 C 0.003 3.997 21 H 0.163 0.837 22 C -0.217 4.217 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.065 0.935 26 H 0.010 0.990 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.176 0.824 30 H 0.157 0.843 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.186 3.360 -13.283 13.875 hybrid contribution 0.916 -0.281 0.957 1.354 sum -1.270 3.078 -12.326 12.768 Atomic orbital electron populations 1.22071 0.94830 1.01990 1.02323 1.21248 0.93578 0.96121 0.84106 0.88718 1.19552 0.95542 0.97182 0.91356 1.22108 0.92906 1.37472 1.03325 0.89196 1.25888 1.02515 0.95878 0.95927 1.70152 1.36882 1.42817 1.08325 0.85671 0.81106 0.77289 0.78679 1.17399 1.21142 1.21853 1.47665 1.53816 1.08524 1.21536 1.21093 0.80176 0.82754 0.89983 1.90750 1.44058 1.68201 1.39816 1.23733 0.93347 0.95244 0.87500 1.86724 1.49228 1.21407 1.72471 1.23280 0.70137 0.82603 0.89965 1.90643 1.39386 1.71865 1.31558 1.21982 0.96665 0.96373 0.84674 0.83673 1.22289 0.93215 1.03387 1.02838 0.90929 0.91549 0.93525 0.99002 0.95834 0.93638 0.82365 0.84337 0.92633 0.88859 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 9.16 71.98 0.66 -4.34 16 2 C 0.15 5.59 2.42 44.99 0.11 5.70 16 3 H 0.09 3.12 7.71 -2.39 -0.02 3.10 16 4 C 0.00 0.06 4.21 29.85 0.13 0.18 16 5 C -0.52 -27.32 8.80 25.60 0.23 -27.09 16 6 H 0.09 4.21 3.49 -2.91 -0.01 4.20 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 8 N -0.94 -57.89 13.29 21.45 0.28 -57.61 16 9 Si 0.95 43.49 29.54 68.60 2.03 45.51 16 10 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 13 N -0.58 -19.08 2.08 -780.43 -1.63 -20.71 16 14 C 0.47 16.35 7.02 87.67 0.62 16.96 16 15 O -0.55 -24.04 12.68 -3.05 -0.04 -24.08 16 16 C 0.08 1.89 7.19 71.08 0.51 2.40 16 17 O -0.38 -10.24 10.72 -62.03 -0.66 -10.90 16 18 C 0.50 13.49 6.83 71.35 0.49 13.97 16 19 O -0.46 -13.52 17.96 21.80 0.39 -13.13 16 20 C 0.11 2.81 3.21 44.41 0.14 2.95 16 21 H 0.15 2.95 8.14 -2.38 -0.02 2.93 16 22 C -0.16 -4.29 7.73 71.98 0.56 -3.74 16 23 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 25 H 0.05 1.71 6.52 -2.38 -0.02 1.70 16 26 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 27 H 0.02 1.37 5.41 -2.39 -0.01 1.36 16 28 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.16 3.42 8.14 -2.39 -0.02 3.41 16 30 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.05 1.78 7.48 -2.39 -0.02 1.77 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.09 2.44 6.78 -2.39 -0.02 2.43 16 Total: -1.00 -71.21 272.30 5.39 -65.82 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 1.12 Total: 7.95 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 3.89 Total: 7.13 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -1.34 Total: -78.31 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -0.31 Total: -48.11 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -71.21 5.39 -65.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695911153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.050 kcal (2) G-P(sol) polarization free energy of solvation -71.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds