Wall clock time and date at job start Mon Mar 30 2020 03:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99452 * 2 1 4 4 C 1.38612 * 120.00157 * 180.02562 * 2 1 3 5 5 N 1.29688 * 124.94656 * 359.71463 * 4 2 1 6 6 C 1.32128 * 116.85928 * 179.81566 * 5 4 2 7 7 C 1.50700 * 122.70834 * 180.22588 * 6 5 4 8 8 N 1.46501 * 109.47216 * 275.26990 * 7 6 5 9 9 C 1.46495 * 119.99772 * 270.00152 * 8 7 6 10 10 C 1.36937 * 120.00119 * 89.99642 * 8 7 6 11 11 H 1.08009 * 119.99595 * 22.35490 * 10 8 7 12 12 C 1.38812 * 120.00397 * 202.35341 * 10 8 7 13 13 N 1.31613 * 119.99588 * 11.33676 * 12 10 8 14 14 Si 1.86796 * 120.00234 * 191.34022 * 12 10 8 15 15 H 1.48508 * 109.47092 * 59.99713 * 14 12 10 16 16 H 1.48497 * 109.46894 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47147 * 299.99907 * 14 12 10 18 18 C 1.33322 * 114.57976 * 0.47779 * 6 5 4 19 19 S 1.70959 * 124.94513 * 180.02562 * 4 2 1 20 20 H 1.09001 * 109.46961 * 269.99428 * 1 2 3 21 21 H 1.09005 * 109.46605 * 150.00159 * 1 2 3 22 22 H 1.08999 * 109.47236 * 30.00008 * 1 2 3 23 23 H 1.08999 * 109.46979 * 90.00404 * 3 2 1 24 24 H 1.09008 * 109.47066 * 209.99912 * 3 2 1 25 25 H 1.08998 * 109.47190 * 330.00303 * 3 2 1 26 26 H 1.09000 * 109.46679 * 35.26898 * 7 6 5 27 27 H 1.08994 * 109.46885 * 155.26799 * 7 6 5 28 28 H 1.08998 * 109.47281 * 94.21507 * 9 8 7 29 29 H 1.09000 * 109.46712 * 214.21192 * 9 8 7 30 30 H 1.08999 * 109.47168 * 334.20965 * 9 8 7 31 31 H 0.97005 * 120.00032 * 180.02562 * 13 12 10 32 32 H 1.08000 * 125.95166 * 179.75095 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1582 -1.2004 -0.0005 5 7 1.6090 -2.3753 0.0042 6 6 2.4241 -3.4152 -0.0010 7 6 1.9284 -4.8383 -0.0014 8 7 1.6536 -5.2602 1.3744 9 6 2.7098 -5.8868 2.1731 10 6 0.4096 -5.0687 1.9138 11 1 -0.4479 -4.9558 1.2669 12 6 0.2506 -5.0197 3.2919 13 7 1.3060 -4.9325 4.0733 14 14 -1.4612 -5.0776 4.0373 15 1 -2.1299 -6.3439 3.6437 16 1 -1.3591 -5.0114 5.5172 17 1 -2.2555 -3.9242 3.5433 18 6 3.7204 -3.1038 -0.0004 19 16 3.8614 -1.3477 0.0000 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3633 -0.8901 -0.5138 22 1 -0.3633 0.8900 -0.5138 23 1 2.3791 1.5834 1.0277 24 1 3.1499 1.1385 -0.5139 25 1 1.6083 2.0284 -0.5138 26 1 1.0141 -4.9043 -0.5912 27 1 2.6885 -5.4876 -0.4356 28 1 3.2135 -5.1265 2.7699 29 1 2.2707 -6.6349 2.8332 30 1 3.4309 -6.3654 1.5105 31 1 1.1950 -4.8986 5.0364 32 1 4.5412 -3.8058 -0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700103165.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:52 Heat of formation + Delta-G solvation = 86.884215 kcal Electronic energy + Delta-G solvation = -15416.591832 eV Core-core repulsion = 12926.632021 eV Total energy + Delta-G solvation = -2489.959810 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.11087 -36.56219 -35.03577 -31.38224 -29.34286 -28.13918 -26.39846 -25.60006 -25.50724 -22.03948 -20.74699 -18.94744 -17.41530 -16.62907 -15.63129 -15.27077 -14.75430 -14.67754 -13.82395 -13.57624 -13.16145 -12.70429 -12.59158 -12.52200 -12.33148 -11.81923 -11.74729 -11.33211 -10.81393 -10.65934 -10.50167 -10.31154 -9.95535 -9.80146 -9.43213 -8.83688 -8.47282 -8.46406 -7.08505 -6.71560 -5.65080 -3.08366 1.68113 1.80086 2.46683 3.22118 3.44583 3.48246 3.49868 3.78825 4.59382 4.90265 5.31251 5.33789 5.41146 5.57058 5.59371 5.78538 5.80549 6.03266 6.09585 6.24888 6.50700 6.65956 6.81710 6.89538 7.08530 7.42351 7.45276 7.79874 7.90930 8.45961 8.75752 9.31023 9.91804 10.40189 11.40136 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.023606 B = 0.008510 C = 0.006992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.875204 B = 3289.621169 C = 4003.582518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.598 5.598 3 C 0.100 3.900 4 C 0.313 3.687 5 N -0.516 5.516 6 C 0.119 3.881 7 C 0.212 3.788 8 N -0.584 5.584 9 C 0.163 3.837 10 C -0.240 4.240 11 H 0.071 0.929 12 C 0.000 4.000 13 N -0.909 5.909 14 Si 0.906 3.094 15 H -0.284 1.284 16 H -0.292 1.292 17 H -0.284 1.284 18 C -0.304 4.304 19 S 0.030 5.970 20 H 0.049 0.951 21 H 0.078 0.922 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.028 0.972 29 H 0.048 0.952 30 H -0.002 1.002 31 H 0.251 0.749 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.522 9.524 -9.028 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.320 5.320 3 C -0.044 4.044 4 C -0.057 4.057 5 N -0.240 5.240 6 C -0.015 4.015 7 C 0.081 3.919 8 N -0.304 5.304 9 C 0.019 3.981 10 C -0.370 4.370 11 H 0.089 0.911 12 C -0.198 4.198 13 N -0.554 5.554 14 Si 0.736 3.264 15 H -0.210 1.210 16 H -0.218 1.218 17 H -0.210 1.210 18 C -0.444 4.444 19 S 0.277 5.723 20 H 0.068 0.932 21 H 0.097 0.903 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.017 0.983 31 H 0.061 0.939 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.701 10.271 -8.796 14.020 hybrid contribution -1.094 -0.507 0.838 1.468 sum 2.607 9.764 -7.959 12.864 Atomic orbital electron populations 1.21574 0.77950 1.02460 1.01672 1.45520 1.05463 1.00796 1.80217 1.21678 0.96704 0.84302 1.01712 1.23572 0.92261 0.90101 0.99797 1.66232 1.37541 0.96023 1.24229 1.21510 0.87939 0.97481 0.94558 1.19701 0.98276 0.85081 0.88821 1.44169 1.10216 1.65894 1.10134 1.20841 0.88971 0.96023 0.92314 1.19211 0.84421 1.43457 0.89873 0.91123 1.25055 0.97054 1.00898 0.96777 1.70069 1.27447 1.54663 1.03238 0.86307 0.84167 0.78038 0.77872 1.21027 1.21772 1.20990 1.26073 1.00756 0.94357 1.23263 1.83308 1.05591 1.07081 1.76280 0.93240 0.90299 0.92019 0.92881 0.91592 0.90691 0.92098 0.92415 0.95404 0.93322 0.98310 0.93852 0.81975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.55 10.60 59.85 0.63 2.18 16 2 N -0.60 -9.41 3.38 -191.88 -0.65 -10.06 16 3 C 0.10 1.10 10.45 59.85 0.63 1.73 16 4 C 0.31 6.03 7.74 -87.68 -0.68 5.36 16 5 N -0.52 -11.60 9.81 -11.36 -0.11 -11.71 16 6 C 0.12 2.62 6.32 -84.18 -0.53 2.09 16 7 C 0.21 4.71 6.14 -5.19 -0.03 4.68 16 8 N -0.58 -15.38 2.91 -182.51 -0.53 -15.91 16 9 C 0.16 4.16 9.01 59.84 0.54 4.70 16 10 C -0.24 -6.89 9.67 -15.06 -0.15 -7.03 16 11 H 0.07 2.01 7.85 -52.48 -0.41 1.60 16 12 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 16 13 N -0.91 -27.55 10.58 55.49 0.59 -26.96 16 14 Si 0.91 22.81 29.57 -169.99 -5.03 17.78 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 17 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 18 C -0.30 -5.93 11.08 29.02 0.32 -5.61 16 19 S 0.03 0.52 21.68 -107.50 -2.33 -1.81 16 20 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.08 1.27 7.62 -51.93 -0.40 0.87 16 22 H 0.06 0.64 7.89 -51.93 -0.41 0.23 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.70 7.04 -51.92 -0.37 0.33 16 25 H 0.07 0.61 7.89 -51.93 -0.41 0.20 16 26 H 0.06 1.34 8.03 -51.93 -0.42 0.92 16 27 H 0.06 1.11 7.82 -51.93 -0.41 0.70 16 28 H 0.03 0.78 7.42 -51.93 -0.39 0.39 16 29 H 0.05 1.32 7.19 -51.93 -0.37 0.94 16 30 H 0.00 -0.04 7.84 -51.93 -0.41 -0.44 16 31 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.16 2.83 8.06 -52.49 -0.42 2.41 16 LS Contribution 284.65 15.07 4.29 4.29 Total: -1.00 -33.40 284.65 -7.51 -40.91 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: -4.38 Total: -4.52 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 0.64 Total: 8.00 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -0.70 Total: -64.64 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.03 Total: 17.78 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -2.33 Total: -1.81 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.40 -7.51 -40.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700103165.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.793 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds