Wall clock time and date at job start Mon Mar 30 2020 03:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99452 * 2 1 4 4 C 1.38612 * 120.00157 * 180.02562 * 2 1 3 5 5 N 1.29688 * 124.94656 * 359.71463 * 4 2 1 6 6 C 1.32128 * 116.85928 * 179.81566 * 5 4 2 7 7 C 1.50700 * 122.70834 * 180.22588 * 6 5 4 8 8 N 1.46501 * 109.47216 * 275.26990 * 7 6 5 9 9 C 1.46495 * 119.99772 * 270.00152 * 8 7 6 10 10 C 1.36937 * 120.00119 * 89.99642 * 8 7 6 11 11 H 1.08009 * 119.99595 * 22.35490 * 10 8 7 12 12 C 1.38812 * 120.00397 * 202.35341 * 10 8 7 13 13 N 1.31613 * 119.99588 * 11.33676 * 12 10 8 14 14 Si 1.86796 * 120.00234 * 191.34022 * 12 10 8 15 15 H 1.48508 * 109.47092 * 59.99713 * 14 12 10 16 16 H 1.48497 * 109.46894 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47147 * 299.99907 * 14 12 10 18 18 C 1.33322 * 114.57976 * 0.47779 * 6 5 4 19 19 S 1.70959 * 124.94513 * 180.02562 * 4 2 1 20 20 H 1.09001 * 109.46961 * 269.99428 * 1 2 3 21 21 H 1.09005 * 109.46605 * 150.00159 * 1 2 3 22 22 H 1.08999 * 109.47236 * 30.00008 * 1 2 3 23 23 H 1.08999 * 109.46979 * 90.00404 * 3 2 1 24 24 H 1.09008 * 109.47066 * 209.99912 * 3 2 1 25 25 H 1.08998 * 109.47190 * 330.00303 * 3 2 1 26 26 H 1.09000 * 109.46679 * 35.26898 * 7 6 5 27 27 H 1.08994 * 109.46885 * 155.26799 * 7 6 5 28 28 H 1.08998 * 109.47281 * 94.21507 * 9 8 7 29 29 H 1.09000 * 109.46712 * 214.21192 * 9 8 7 30 30 H 1.08999 * 109.47168 * 334.20965 * 9 8 7 31 31 H 0.97005 * 120.00032 * 180.02562 * 13 12 10 32 32 H 1.08000 * 125.95166 * 179.75095 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1582 -1.2004 -0.0005 5 7 1.6090 -2.3753 0.0042 6 6 2.4241 -3.4152 -0.0010 7 6 1.9284 -4.8383 -0.0014 8 7 1.6536 -5.2602 1.3744 9 6 2.7098 -5.8868 2.1731 10 6 0.4096 -5.0687 1.9138 11 1 -0.4479 -4.9558 1.2669 12 6 0.2506 -5.0197 3.2919 13 7 1.3060 -4.9325 4.0733 14 14 -1.4612 -5.0776 4.0373 15 1 -2.1299 -6.3439 3.6437 16 1 -1.3591 -5.0114 5.5172 17 1 -2.2555 -3.9242 3.5433 18 6 3.7204 -3.1038 -0.0004 19 16 3.8614 -1.3477 0.0000 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3633 -0.8901 -0.5138 22 1 -0.3633 0.8900 -0.5138 23 1 2.3791 1.5834 1.0277 24 1 3.1499 1.1385 -0.5139 25 1 1.6083 2.0284 -0.5138 26 1 1.0141 -4.9043 -0.5912 27 1 2.6885 -5.4876 -0.4356 28 1 3.2135 -5.1265 2.7699 29 1 2.2707 -6.6349 2.8332 30 1 3.4309 -6.3654 1.5105 31 1 1.1950 -4.8986 5.0364 32 1 4.5412 -3.8058 -0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700103165.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:51 Heat of formation + Delta-G solvation = 65.280789 kcal Electronic energy + Delta-G solvation = -15417.528626 eV Core-core repulsion = 12926.632021 eV Total energy + Delta-G solvation = -2490.896605 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.61405 -37.95806 -36.86661 -33.40246 -30.97932 -29.19930 -28.24790 -27.53269 -26.88283 -23.76396 -22.38869 -20.44599 -18.81673 -18.72297 -17.07877 -16.86543 -16.45377 -15.84879 -15.55723 -15.36426 -15.07244 -14.22779 -14.05053 -13.60402 -13.53917 -13.41774 -13.17843 -12.88010 -12.79286 -12.61456 -12.24987 -12.18183 -12.03829 -11.76975 -10.83154 -10.63703 -10.33723 -9.90176 -8.83317 -8.41876 -7.82278 -5.28735 0.21169 0.38714 0.98651 1.42341 1.45454 1.51605 2.02886 2.20513 2.53690 3.32771 3.75750 3.86119 4.19364 4.39654 4.46359 4.53492 4.62381 4.67494 4.77795 4.84662 4.87921 4.92531 5.08620 5.32170 5.35914 5.63264 5.73287 5.92846 6.08028 6.32821 7.14805 7.28914 7.85667 8.28131 9.21041 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.023606 B = 0.008510 C = 0.006992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.875204 B = 3289.621169 C = 4003.582518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.598 5.598 3 C 0.091 3.909 4 C 0.293 3.707 5 N -0.565 5.565 6 C 0.092 3.908 7 C 0.212 3.788 8 N -0.601 5.601 9 C 0.179 3.821 10 C -0.246 4.246 11 H 0.064 0.936 12 C -0.055 4.055 13 N -0.940 5.940 14 Si 0.967 3.033 15 H -0.274 1.274 16 H -0.293 1.293 17 H -0.282 1.282 18 C -0.313 4.313 19 S 0.100 5.900 20 H 0.035 0.965 21 H 0.053 0.947 22 H 0.107 0.893 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.111 0.889 26 H 0.053 0.947 27 H 0.088 0.912 28 H -0.003 1.003 29 H 0.022 0.978 30 H 0.038 0.962 31 H 0.246 0.754 32 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.970 11.124 -10.049 15.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.320 5.320 3 C -0.051 4.051 4 C -0.077 4.077 5 N -0.291 5.291 6 C -0.041 4.041 7 C 0.083 3.917 8 N -0.323 5.323 9 C 0.035 3.965 10 C -0.376 4.376 11 H 0.082 0.918 12 C -0.249 4.249 13 N -0.587 5.587 14 Si 0.795 3.205 15 H -0.199 1.199 16 H -0.219 1.219 17 H -0.208 1.208 18 C -0.455 4.455 19 S 0.348 5.652 20 H 0.054 0.946 21 H 0.072 0.928 22 H 0.126 0.874 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.130 0.870 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.015 0.985 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.153 11.922 -9.862 16.020 hybrid contribution -1.163 -0.868 1.009 1.767 sum 2.990 11.054 -8.854 14.475 Atomic orbital electron populations 1.21637 0.77530 1.03488 1.01094 1.46004 1.06202 1.01018 1.78752 1.22015 0.97343 0.82989 1.02727 1.24041 0.94007 0.90546 0.99140 1.66193 1.39081 0.97227 1.26612 1.21303 0.88994 0.97198 0.96595 1.19735 0.99021 0.86357 0.86581 1.44275 1.09726 1.67010 1.11255 1.20568 0.89062 0.94505 0.92396 1.19411 0.85589 1.42517 0.90128 0.91770 1.25769 1.00487 1.01466 0.97203 1.70244 1.29123 1.56433 1.02876 0.85345 0.80173 0.78258 0.76711 1.19935 1.21936 1.20804 1.26396 1.00534 0.96892 1.21671 1.82937 1.03035 1.04179 1.75066 0.94608 0.92789 0.87432 0.92329 0.90933 0.87049 0.92845 0.89421 0.98480 0.95914 0.94391 0.94532 0.80161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.91 10.60 127.77 1.35 4.27 16 2 N -0.60 -17.65 3.38 -760.97 -2.57 -20.22 16 3 C 0.09 1.71 10.45 127.77 1.34 3.04 16 4 C 0.29 10.95 7.74 179.32 1.39 12.33 16 5 N -0.56 -25.42 9.81 -189.86 -1.86 -27.28 16 6 C 0.09 4.03 6.32 41.40 0.26 4.30 16 7 C 0.21 9.40 6.14 85.63 0.53 9.92 16 8 N -0.60 -31.95 2.91 -731.32 -2.13 -34.08 16 9 C 0.18 9.22 9.01 127.77 1.15 10.37 16 10 C -0.25 -14.39 9.67 84.03 0.81 -13.58 16 11 H 0.06 3.74 7.85 -2.91 -0.02 3.72 16 12 C -0.05 -3.25 5.13 84.86 0.44 -2.82 16 13 N -0.94 -58.32 10.58 21.65 0.23 -58.09 16 14 Si 0.97 47.69 29.57 68.60 2.03 49.72 16 15 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 16 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 17 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 18 C -0.31 -11.77 11.08 66.71 0.74 -11.03 16 19 S 0.10 3.20 21.68 -56.49 -1.22 1.97 16 20 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.05 1.74 7.62 -2.38 -0.02 1.72 16 22 H 0.11 1.89 7.89 -2.39 -0.02 1.87 16 23 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 1.27 7.04 -2.38 -0.02 1.26 16 25 H 0.11 1.31 7.89 -2.39 -0.02 1.29 16 26 H 0.05 2.39 8.03 -2.39 -0.02 2.37 16 27 H 0.09 3.25 7.82 -2.39 -0.02 3.23 16 28 H 0.00 -0.18 7.42 -2.39 -0.02 -0.20 16 29 H 0.02 1.24 7.19 -2.39 -0.02 1.22 16 30 H 0.04 1.61 7.84 -2.39 -0.02 1.59 16 31 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 32 H 0.18 5.89 8.06 -2.91 -0.02 5.87 16 Total: -1.00 -73.49 284.65 3.58 -69.91 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: 1.10 Total: 1.26 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 8.00 Total: 16.81 kcal Atomic # 7 Polarization: -133.34 SS G_CDS: -6.33 Total: -139.67 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.22 Total: 1.97 kcal Total: -73.49 3.58 -69.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700103165.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.190 kcal (2) G-P(sol) polarization free energy of solvation -73.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds