Wall clock time and date at job start Mon Mar 30 2020 03:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 113.99810 * 2 1 4 4 C 1.53001 * 109.47437 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47110 * 64.72265 * 4 3 2 6 6 C 1.36881 * 119.99819 * 90.55992 * 5 4 3 7 7 H 1.07999 * 120.00205 * 302.56908 * 6 5 4 8 8 C 1.39049 * 119.99701 * 122.29872 * 6 5 4 9 9 N 1.31366 * 119.99315 * 174.41227 * 8 6 5 10 10 Si 1.86797 * 120.00357 * 354.41222 * 8 6 5 11 11 H 1.48499 * 109.47193 * 95.24730 * 10 8 6 12 12 H 1.48498 * 109.47192 * 215.25054 * 10 8 6 13 13 H 1.48497 * 109.46884 * 335.24769 * 10 8 6 14 14 C 1.34782 * 120.00065 * 270.55869 * 5 4 3 15 15 O 1.21570 * 119.99661 * 354.31458 * 14 5 4 16 16 C 1.47888 * 119.99637 * 174.31123 * 14 5 4 17 17 N 1.34228 * 126.70821 * 352.40349 * 16 14 5 18 18 N 1.28985 * 107.24343 * 179.89315 * 17 16 14 19 19 N 1.28716 * 109.00752 * 0.38080 * 18 17 16 20 20 H 0.96996 * 125.31356 * 179.78590 * 19 18 17 21 21 N 1.28869 * 109.37026 * 359.75590 * 19 18 17 22 22 H 1.08991 * 109.47234 * 60.00068 * 1 2 3 23 23 H 1.09007 * 109.46875 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46968 * 299.99701 * 1 2 3 25 25 H 1.08998 * 109.47307 * 60.00277 * 3 2 1 26 26 H 1.09005 * 109.47536 * 300.00352 * 3 2 1 27 27 H 1.09002 * 109.46730 * 304.72819 * 4 3 2 28 28 H 1.08996 * 109.47339 * 184.72607 * 4 3 2 29 29 H 0.97000 * 119.99666 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9752 0.5585 -1.2499 6 6 4.2760 1.3354 -2.3360 7 1 3.5349 2.0091 -2.7399 8 6 5.5377 1.2612 -2.9158 9 7 5.7921 1.9227 -4.0218 10 14 6.8708 0.2210 -2.1219 11 1 6.8952 -1.1212 -2.7568 12 1 8.1886 0.8800 -2.3067 13 1 6.5883 0.0773 -0.6712 14 6 4.0837 -0.7826 -1.3298 15 8 3.9172 -1.4659 -0.3382 16 6 4.4051 -1.4226 -2.6237 17 7 4.4754 -0.8203 -3.8212 18 7 4.7834 -1.7255 -4.6869 19 7 4.8992 -2.8580 -4.0862 20 1 5.1222 -3.6994 -4.5142 21 7 4.6732 -2.6992 -2.8275 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8463 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 3.8518 0.5723 0.8437 28 1 3.9785 2.1770 0.0840 29 1 6.6723 1.8713 -4.4261 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701201257.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:00 Heat of formation + Delta-G solvation = 50.210933 kcal Electronic energy + Delta-G solvation = -18204.649744 eV Core-core repulsion = 15166.806446 eV Total energy + Delta-G solvation = -3037.843298 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.40119 -40.75270 -38.55388 -36.79778 -35.20078 -34.17182 -33.81471 -31.06371 -27.36257 -26.80896 -26.03466 -25.33283 -23.37680 -21.64401 -20.63375 -19.08078 -18.43599 -17.59506 -17.31248 -17.10265 -16.59278 -16.04557 -15.97208 -15.28933 -14.96246 -14.80815 -14.03172 -13.50578 -13.39533 -13.21584 -13.04599 -12.76062 -12.51532 -12.19443 -12.12480 -12.06675 -11.91091 -11.39525 -11.17964 -10.74139 -10.46149 -9.50124 -8.40915 -6.23992 -0.01591 0.56461 1.04754 1.17552 1.29868 1.37695 2.11223 2.20693 2.31190 2.99706 3.08836 3.28301 3.51269 4.23742 4.28774 4.39149 4.48954 4.59255 4.60426 4.62684 4.77872 4.86947 5.06099 5.67332 5.77393 5.79889 6.41696 6.42925 6.92259 7.17313 7.31066 7.66380 8.71356 Molecular weight = 241.10amu Principal moments of inertia in cm(-1) A = 0.023686 B = 0.012272 C = 0.009989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.843844 B = 2281.135994 C = 2802.503883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.053 3.947 4 C 0.106 3.894 5 N -0.446 5.446 6 C -0.336 4.336 7 H 0.087 0.913 8 C 0.094 3.906 9 N -0.868 5.868 10 Si 0.880 3.120 11 H -0.291 1.291 12 H -0.271 1.271 13 H -0.267 1.267 14 C 0.565 3.435 15 O -0.571 6.571 16 C 0.128 3.872 17 N -0.203 5.203 18 N -0.077 5.077 19 N -0.206 5.206 20 H 0.492 0.508 21 N -0.271 5.271 22 H 0.040 0.960 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.117 0.883 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.374 -3.846 2.878 6.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.024 4.024 4 C -0.016 4.016 5 N -0.168 5.168 6 C -0.465 4.465 7 H 0.104 0.896 8 C -0.115 4.115 9 N -0.503 5.503 10 Si 0.707 3.293 11 H -0.218 1.218 12 H -0.197 1.197 13 H -0.191 1.191 14 C 0.349 3.651 15 O -0.451 6.451 16 C -0.156 4.156 17 N -0.078 5.078 18 N -0.073 5.073 19 N -0.057 5.057 20 H 0.351 0.649 21 N -0.127 5.127 22 H 0.059 0.941 23 H 0.102 0.898 24 H 0.079 0.921 25 H 0.106 0.894 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.135 0.865 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.141 -4.238 2.664 6.497 hybrid contribution 0.773 -0.849 0.086 1.151 sum -3.368 -5.087 2.750 6.692 Atomic orbital electron populations 1.22840 0.80333 1.02964 1.00654 1.88049 1.20838 1.28715 1.95493 1.22968 0.93295 0.84697 1.01417 1.21946 0.93740 0.99776 0.86122 1.43402 1.58730 1.02158 1.12476 1.18662 0.98072 1.22843 1.06873 0.89561 1.25562 0.97364 0.93975 0.94574 1.69581 1.23025 1.40291 1.17452 0.86786 0.82502 0.79568 0.80406 1.21811 1.19684 1.19127 1.17046 0.80517 0.83776 0.83732 1.90657 1.54751 1.63778 1.35939 1.25419 1.05392 0.87513 0.97235 1.77113 1.12750 1.20529 0.97392 1.78925 1.15336 0.89456 1.23566 1.47850 1.42699 1.12626 1.02494 0.64910 1.74902 1.18465 1.19316 1.00021 0.94150 0.89804 0.92126 0.89362 0.93269 0.90981 0.86473 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 15 2 O -0.41 -15.79 9.66 -147.42 -1.42 -17.21 15 3 C 0.05 1.80 6.28 71.98 0.45 2.25 15 4 C 0.11 4.16 5.86 86.38 0.51 4.67 15 5 N -0.45 -21.69 1.92 -638.76 -1.23 -22.92 15 6 C -0.34 -17.49 8.46 84.10 0.71 -16.78 15 7 H 0.09 4.77 8.06 -2.91 -0.02 4.74 15 8 C 0.09 5.02 3.50 84.96 0.30 5.31 15 9 N -0.87 -47.87 13.95 21.68 0.30 -47.56 15 10 Si 0.88 43.89 24.16 68.60 1.66 45.54 15 11 H -0.29 -14.68 6.48 99.48 0.64 -14.03 15 12 H -0.27 -12.94 7.11 99.48 0.71 -12.23 15 13 H -0.27 -13.61 7.00 99.48 0.70 -12.91 15 14 C 0.56 29.17 5.25 86.80 0.46 29.63 15 15 O -0.57 -30.87 16.13 -2.38 -0.04 -30.91 15 16 C 0.13 6.31 4.98 137.08 0.68 7.00 15 17 N -0.20 -10.01 8.05 -52.40 -0.42 -10.43 15 18 N -0.08 -3.19 13.46 37.02 0.50 -2.69 15 19 N -0.21 -6.97 7.90 37.02 0.29 -6.68 15 20 H 0.49 10.02 8.96 -347.51 -3.11 6.91 15 21 N -0.27 -11.56 12.40 -52.35 -0.65 -12.21 15 22 H 0.04 1.06 8.14 -2.39 -0.02 1.04 15 23 H 0.08 2.17 8.14 -2.38 -0.02 2.15 15 24 H 0.06 1.33 8.14 -2.39 -0.02 1.31 15 25 H 0.09 2.24 8.14 -2.39 -0.02 2.22 15 26 H 0.05 1.69 8.14 -2.38 -0.02 1.67 15 27 H 0.07 2.90 7.37 -2.39 -0.02 2.88 15 28 H 0.12 3.99 8.03 -2.39 -0.02 3.97 15 29 H 0.28 14.46 8.31 -92.71 -0.77 13.69 15 Total: -1.00 -70.91 255.01 1.35 -69.56 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -1.99 Total: 1.40 kcal Atomic # 6 Polarization: 29.75 SS G_CDS: 4.35 Total: 34.11 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -1.21 Total: -102.49 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -1.46 Total: -48.12 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.66 Total: 45.54 kcal Total: -70.91 1.35 -69.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701201257.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.775 kcal (2) G-P(sol) polarization free energy of solvation -70.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds