Wall clock time and date at job start Mon Mar 30 2020 03:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31734 * 123.77120 * 2 1 4 4 N 1.27574 * 118.27710 * 180.02562 * 3 2 1 5 5 S 1.56517 * 109.22011 * 359.97438 * 4 3 2 6 6 C 1.35343 * 123.76243 * 180.02562 * 2 1 3 7 7 C 1.50705 * 127.92375 * 0.24000 * 6 2 1 8 8 N 1.46501 * 109.46870 * 89.70710 * 7 6 2 9 9 C 1.36933 * 120.00289 * 89.37816 * 8 7 6 10 10 H 1.08004 * 119.99465 * 217.02975 * 9 8 7 11 11 C 1.38810 * 120.00488 * 37.02379 * 9 8 7 12 12 N 1.31614 * 120.00100 * 216.18928 * 11 9 8 13 13 Si 1.86798 * 119.99555 * 36.18767 * 11 9 8 14 14 H 1.48501 * 109.47065 * 95.12454 * 13 11 9 15 15 H 1.48501 * 109.46881 * 215.11850 * 13 11 9 16 16 H 1.48497 * 109.47299 * 335.11870 * 13 11 9 17 17 C 1.46500 * 119.99504 * 269.36793 * 8 7 6 18 18 C 1.53007 * 109.47084 * 114.64913 * 17 8 7 19 19 C 1.53001 * 109.47346 * 234.64801 * 17 8 7 20 20 H 1.09007 * 109.47058 * 269.98522 * 1 2 3 21 21 H 1.09001 * 109.46996 * 29.97816 * 1 2 3 22 22 H 1.08997 * 109.47293 * 149.98034 * 1 2 3 23 23 H 1.08998 * 109.46676 * 209.70181 * 7 6 2 24 24 H 1.08998 * 109.47234 * 329.70493 * 7 6 2 25 25 H 0.97001 * 119.99943 * 179.97438 * 12 11 9 26 26 H 1.08997 * 109.47390 * 354.65121 * 17 8 7 27 27 H 1.08997 * 109.46965 * 65.48482 * 18 17 8 28 28 H 1.08997 * 109.47035 * 185.48966 * 18 17 8 29 29 H 1.09003 * 109.46752 * 305.49183 * 18 17 8 30 30 H 1.08999 * 109.47075 * 63.45252 * 19 17 8 31 31 H 1.08996 * 109.47324 * 183.45257 * 19 17 8 32 32 H 1.08996 * 109.46813 * 303.45355 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2393 1.0951 0.0000 4 7 3.5092 0.9729 -0.0005 5 16 3.8806 -0.5476 -0.0004 6 6 2.2592 -1.1252 -0.0005 7 6 1.7857 -2.5559 -0.0061 8 7 1.6304 -3.0134 -1.3892 9 6 2.6873 -3.5882 -2.0430 10 1 2.8406 -3.3962 -3.0947 11 6 3.5617 -4.4176 -1.3542 12 7 4.8451 -4.4079 -1.6456 13 14 2.9166 -5.5473 -0.0136 14 1 2.6544 -6.8930 -0.5841 15 1 3.9266 -5.6571 1.0695 16 1 1.6563 -4.9899 0.5394 17 6 0.3441 -2.8560 -2.0726 18 6 0.5017 -1.8755 -3.2366 19 6 -0.1185 -4.2127 -2.6076 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3634 -0.8898 -0.5141 23 1 2.5172 -3.1826 0.5039 24 1 0.8273 -2.6235 0.5088 25 1 5.4562 -4.9872 -1.1639 26 1 -0.3955 -2.4708 -1.3707 27 1 1.1671 -2.3047 -3.9856 28 1 -0.4734 -1.6832 -3.6842 29 1 0.9237 -0.9401 -2.8691 30 1 -0.2898 -4.8930 -1.7734 31 1 -1.0444 -4.0855 -3.1686 32 1 0.6489 -4.6260 -3.2620 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703997579.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:08 Heat of formation + Delta-G solvation = 84.006259 kcal Electronic energy + Delta-G solvation = -16018.426020 eV Core-core repulsion = 13528.341412 eV Total energy + Delta-G solvation = -2490.084608 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.14910 -37.07672 -33.19052 -32.57243 -30.84524 -27.97547 -26.52060 -26.29981 -24.74313 -23.22651 -19.83562 -19.56827 -17.86034 -16.71889 -15.41692 -15.09823 -14.76076 -14.51203 -13.60234 -13.28322 -12.78894 -12.66127 -12.54680 -12.46901 -12.21553 -11.80409 -11.59721 -11.46790 -11.04139 -10.84717 -10.58864 -10.55976 -10.25767 -9.99115 -9.79499 -9.34557 -8.89631 -8.74872 -8.60594 -7.08824 -6.32464 -3.53166 0.99297 1.97689 2.54756 2.86730 3.22378 3.36321 3.40194 4.34833 4.71931 4.76103 5.08232 5.36349 5.53882 5.60683 5.81281 5.82782 5.94627 6.02720 6.10316 6.13842 6.24268 6.37184 6.46359 6.52024 6.54396 6.59911 6.99768 7.03450 7.76695 8.20533 8.48515 8.75694 9.47621 9.90533 10.81102 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.021343 B = 0.012396 C = 0.009449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.597551 B = 2258.301210 C = 2962.572170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.007 4.007 3 N -0.253 5.253 4 N -0.336 5.336 5 S 0.430 5.570 6 C -0.239 4.239 7 C 0.220 3.780 8 N -0.578 5.578 9 C -0.277 4.277 10 H 0.079 0.921 11 C 0.055 3.945 12 N -0.855 5.855 13 Si 0.838 3.162 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.261 1.261 17 C 0.165 3.835 18 C -0.156 4.156 19 C -0.151 4.151 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.268 0.732 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.709 2.497 3.037 8.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.154 4.154 3 N -0.119 5.119 4 N -0.314 5.314 5 S 0.566 5.434 6 C -0.380 4.380 7 C 0.091 3.909 8 N -0.299 5.299 9 C -0.406 4.406 10 H 0.097 0.903 11 C -0.150 4.150 12 N -0.491 5.491 13 Si 0.663 3.337 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.185 1.185 17 C 0.059 3.941 18 C -0.215 4.215 19 C -0.210 4.210 20 H 0.088 0.912 21 H 0.090 0.910 22 H 0.097 0.903 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.896 3.567 3.045 7.534 hybrid contribution -1.511 -1.329 0.557 2.088 sum -7.408 2.238 3.602 8.536 Atomic orbital electron populations 1.20218 0.86331 1.03395 1.02400 1.21939 0.99482 0.87128 1.06828 1.71060 0.97362 1.28322 1.15201 1.78565 1.10129 1.16757 1.25961 1.81741 1.10711 0.99397 1.51533 1.28442 0.98576 1.04570 1.06413 1.19801 0.98854 0.84109 0.88169 1.44299 1.08655 1.65518 1.11379 1.18568 1.02687 1.23157 0.96227 0.90341 1.25459 0.94713 0.97637 0.97190 1.70107 1.01594 1.35769 1.41619 0.87454 0.80141 0.83561 0.82523 1.21258 1.21704 1.18537 1.20547 0.86629 0.93868 0.93084 1.22180 0.99846 0.99721 0.99757 1.22074 0.99807 0.98214 1.00889 0.91191 0.91016 0.90256 0.91419 0.91712 0.92216 0.92863 0.92496 0.94073 0.93554 0.93607 0.94058 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.02 36.01 0.36 -0.53 16 2 C -0.01 -0.13 6.89 -83.66 -0.58 -0.71 16 3 N -0.25 -5.13 11.68 32.45 0.38 -4.75 16 4 N -0.34 -6.94 12.54 60.35 0.76 -6.18 16 5 S 0.43 8.52 23.40 -107.50 -2.52 6.00 16 6 C -0.24 -4.63 6.25 -35.34 -0.22 -4.85 16 7 C 0.22 4.30 4.34 -5.19 -0.02 4.28 16 8 N -0.58 -12.06 1.98 -167.02 -0.33 -12.39 16 9 C -0.28 -6.77 8.29 -15.06 -0.12 -6.90 16 10 H 0.08 2.13 7.35 -52.48 -0.39 1.74 16 11 C 0.06 1.41 4.99 -17.43 -0.09 1.32 16 12 N -0.85 -23.10 13.97 55.49 0.78 -22.32 16 13 Si 0.84 19.15 26.33 -169.99 -4.48 14.67 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.26 -5.61 6.13 56.52 0.35 -5.27 16 17 C 0.16 2.91 3.10 -67.93 -0.21 2.70 16 18 C -0.16 -2.69 9.16 37.16 0.34 -2.34 16 19 C -0.15 -2.55 9.14 37.16 0.34 -2.21 16 20 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 21 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.08 1.08 5.22 -51.93 -0.27 0.81 16 23 H 0.07 1.42 4.53 -51.93 -0.24 1.19 16 24 H 0.06 1.11 7.49 -51.93 -0.39 0.73 16 25 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.05 0.84 5.66 -51.93 -0.29 0.54 16 27 H 0.06 1.07 7.42 -51.93 -0.39 0.68 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.27 7.43 -51.93 -0.39 0.88 16 LS Contribution 274.69 15.07 4.14 4.14 Total: -1.00 -27.29 274.69 -5.54 -32.83 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -4.07 Total: -2.76 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -0.20 Total: -9.24 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 1.58 Total: -45.64 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.48 Total: 14.67 kcal Atomic # 16 Polarization: 8.52 SS G_CDS: -2.52 Total: 6.00 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.29 -5.54 -32.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703997579.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.839 kcal (2) G-P(sol) polarization free energy of solvation -27.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds