Wall clock time and date at job start Mon Mar 30 2020 03:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31734 * 123.77120 * 2 1 4 4 N 1.27574 * 118.27710 * 180.02562 * 3 2 1 5 5 S 1.56517 * 109.22011 * 359.97438 * 4 3 2 6 6 C 1.35343 * 123.76243 * 180.02562 * 2 1 3 7 7 C 1.50705 * 127.92375 * 0.24000 * 6 2 1 8 8 N 1.46501 * 109.46870 * 89.70710 * 7 6 2 9 9 C 1.36933 * 120.00289 * 89.37816 * 8 7 6 10 10 H 1.08004 * 119.99465 * 217.02975 * 9 8 7 11 11 C 1.38810 * 120.00488 * 37.02379 * 9 8 7 12 12 N 1.31614 * 120.00100 * 216.18928 * 11 9 8 13 13 Si 1.86798 * 119.99555 * 36.18767 * 11 9 8 14 14 H 1.48501 * 109.47065 * 95.12454 * 13 11 9 15 15 H 1.48501 * 109.46881 * 215.11850 * 13 11 9 16 16 H 1.48497 * 109.47299 * 335.11870 * 13 11 9 17 17 C 1.46500 * 119.99504 * 269.36793 * 8 7 6 18 18 C 1.53007 * 109.47084 * 114.64913 * 17 8 7 19 19 C 1.53001 * 109.47346 * 234.64801 * 17 8 7 20 20 H 1.09007 * 109.47058 * 269.98522 * 1 2 3 21 21 H 1.09001 * 109.46996 * 29.97816 * 1 2 3 22 22 H 1.08997 * 109.47293 * 149.98034 * 1 2 3 23 23 H 1.08998 * 109.46676 * 209.70181 * 7 6 2 24 24 H 1.08998 * 109.47234 * 329.70493 * 7 6 2 25 25 H 0.97001 * 119.99943 * 179.97438 * 12 11 9 26 26 H 1.08997 * 109.47390 * 354.65121 * 17 8 7 27 27 H 1.08997 * 109.46965 * 65.48482 * 18 17 8 28 28 H 1.08997 * 109.47035 * 185.48966 * 18 17 8 29 29 H 1.09003 * 109.46752 * 305.49183 * 18 17 8 30 30 H 1.08999 * 109.47075 * 63.45252 * 19 17 8 31 31 H 1.08996 * 109.47324 * 183.45257 * 19 17 8 32 32 H 1.08996 * 109.46813 * 303.45355 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2393 1.0951 0.0000 4 7 3.5092 0.9729 -0.0005 5 16 3.8806 -0.5476 -0.0004 6 6 2.2592 -1.1252 -0.0005 7 6 1.7857 -2.5559 -0.0061 8 7 1.6304 -3.0134 -1.3892 9 6 2.6873 -3.5882 -2.0430 10 1 2.8406 -3.3962 -3.0947 11 6 3.5617 -4.4176 -1.3542 12 7 4.8451 -4.4079 -1.6456 13 14 2.9166 -5.5473 -0.0136 14 1 2.6544 -6.8930 -0.5841 15 1 3.9266 -5.6571 1.0695 16 1 1.6563 -4.9899 0.5394 17 6 0.3441 -2.8560 -2.0726 18 6 0.5017 -1.8755 -3.2366 19 6 -0.1185 -4.2127 -2.6076 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3634 -0.8898 -0.5141 23 1 2.5172 -3.1826 0.5039 24 1 0.8273 -2.6235 0.5088 25 1 5.4562 -4.9872 -1.1639 26 1 -0.3955 -2.4708 -1.3707 27 1 1.1671 -2.3047 -3.9856 28 1 -0.4734 -1.6832 -3.6842 29 1 0.9237 -0.9401 -2.8691 30 1 -0.2898 -4.8930 -1.7734 31 1 -1.0444 -4.0855 -3.1686 32 1 0.6489 -4.6260 -3.2620 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703997579.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:08 Heat of formation + Delta-G solvation = 67.365207 kcal Electronic energy + Delta-G solvation = -16019.147630 eV Core-core repulsion = 13528.341412 eV Total energy + Delta-G solvation = -2490.806218 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.69706 -38.63946 -34.64666 -34.34018 -32.39622 -29.48633 -27.92541 -27.69199 -26.44809 -24.82610 -21.34859 -21.16792 -19.36815 -18.46528 -17.04653 -16.72354 -16.34349 -16.03780 -15.18788 -14.78863 -14.38299 -14.21441 -13.93454 -13.78648 -13.66824 -13.17100 -13.09953 -12.88043 -12.61926 -12.54412 -12.21630 -12.02901 -11.82255 -11.53005 -11.38759 -10.92522 -10.52458 -10.43922 -10.25414 -8.80589 -8.24263 -5.44315 -0.57310 0.43262 0.96998 1.36162 1.41289 1.52761 1.57079 2.47258 2.97784 3.32876 3.42352 3.91354 4.08102 4.24810 4.48884 4.55016 4.68319 4.70131 4.80848 4.82972 4.92907 4.99545 5.12492 5.16055 5.20582 5.30408 5.59997 5.65266 5.95257 6.29465 6.92931 6.99991 7.66109 8.09637 8.94160 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.021343 B = 0.012396 C = 0.009449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.597551 B = 2258.301210 C = 2962.572170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.005 3.995 3 N -0.268 5.268 4 N -0.346 5.346 5 S 0.416 5.584 6 C -0.243 4.243 7 C 0.218 3.782 8 N -0.588 5.588 9 C -0.260 4.260 10 H 0.038 0.962 11 C 0.012 3.988 12 N -0.907 5.907 13 Si 0.890 3.110 14 H -0.298 1.298 15 H -0.298 1.298 16 H -0.232 1.232 17 C 0.157 3.843 18 C -0.146 4.146 19 C -0.146 4.146 20 H 0.097 0.903 21 H 0.083 0.917 22 H 0.090 0.910 23 H 0.052 0.948 24 H 0.102 0.898 25 H 0.265 0.735 26 H 0.088 0.912 27 H 0.028 0.972 28 H 0.074 0.926 29 H 0.029 0.971 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.826 3.021 4.237 12.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.142 4.142 3 N -0.135 5.135 4 N -0.324 5.324 5 S 0.552 5.448 6 C -0.384 4.384 7 C 0.089 3.911 8 N -0.309 5.309 9 C -0.390 4.390 10 H 0.056 0.944 11 C -0.189 4.189 12 N -0.547 5.547 13 Si 0.716 3.284 14 H -0.226 1.226 15 H -0.225 1.225 16 H -0.155 1.155 17 C 0.052 3.948 18 C -0.205 4.205 19 C -0.205 4.205 20 H 0.116 0.884 21 H 0.101 0.899 22 H 0.108 0.892 23 H 0.071 0.929 24 H 0.120 0.880 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.058 4.100 4.249 10.813 hybrid contribution -0.599 -1.325 0.164 1.464 sum -9.657 2.775 4.413 10.974 Atomic orbital electron populations 1.20445 0.82902 1.04499 1.04545 1.22590 1.01391 0.85937 1.04254 1.71093 0.97277 1.29292 1.15797 1.78575 1.10753 1.17027 1.26090 1.81859 1.12046 0.99495 1.51361 1.28511 0.97999 1.05011 1.06902 1.19868 1.00210 0.83601 0.87433 1.44386 1.09030 1.65873 1.11612 1.18242 1.03197 1.22844 0.94731 0.94445 1.25849 0.94579 0.98930 0.99565 1.70195 1.02767 1.37534 1.44174 0.86610 0.80478 0.81240 0.80115 1.22595 1.22531 1.15492 1.20817 0.85826 0.94485 0.93660 1.22080 1.00904 0.98464 0.99079 1.22017 1.00303 0.97498 1.00667 0.88418 0.89862 0.89154 0.92945 0.88026 0.92583 0.89460 0.95281 0.90677 0.95215 0.93538 0.90822 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.50 10.02 71.24 0.71 -0.78 16 2 C 0.00 0.16 6.89 41.91 0.29 0.45 16 3 N -0.27 -10.33 11.68 -51.25 -0.60 -10.93 16 4 N -0.35 -14.02 12.54 37.02 0.46 -13.56 16 5 S 0.42 16.37 23.40 -56.49 -1.32 15.05 16 6 C -0.24 -8.89 6.25 25.02 0.16 -8.73 16 7 C 0.22 7.90 4.34 85.63 0.37 8.27 16 8 N -0.59 -23.46 1.98 -682.32 -1.35 -24.81 16 9 C -0.26 -12.87 8.29 84.03 0.70 -12.17 16 10 H 0.04 2.14 7.35 -2.91 -0.02 2.12 16 11 C 0.01 0.61 4.99 84.86 0.42 1.03 16 12 N -0.91 -50.92 13.97 21.65 0.30 -50.61 16 13 Si 0.89 39.44 26.33 68.60 1.81 41.25 16 14 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 15 H -0.30 -13.49 7.11 99.48 0.71 -12.79 16 16 H -0.23 -9.06 6.13 99.48 0.61 -8.45 16 17 C 0.16 5.04 3.10 44.99 0.14 5.18 16 18 C -0.15 -4.72 9.16 71.98 0.66 -4.06 16 19 C -0.15 -4.52 9.14 71.98 0.66 -3.86 16 20 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 21 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.09 1.94 5.22 -2.39 -0.01 1.92 16 23 H 0.05 2.09 4.53 -2.39 -0.01 2.07 16 24 H 0.10 2.96 7.49 -2.39 -0.02 2.94 16 25 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 26 H 0.09 2.25 5.66 -2.39 -0.01 2.24 16 27 H 0.03 1.07 7.42 -2.39 -0.02 1.05 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.37 7.43 -2.39 -0.02 1.35 16 Total: -1.00 -60.19 274.69 4.43 -55.76 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: 1.03 Total: 2.54 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 4.11 Total: -14.69 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -1.18 Total: -99.91 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 1.81 Total: 41.25 kcal Atomic # 16 Polarization: 16.37 SS G_CDS: -1.32 Total: 15.05 kcal Total: -60.19 4.43 -55.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703997579.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.123 kcal (2) G-P(sol) polarization free energy of solvation -60.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds