Wall clock time and date at job start Mon Mar 30 2020 03:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86796 * 119.99869 * 2 1 4 4 H 1.48508 * 109.46899 * 239.99637 * 3 2 1 5 5 H 1.48500 * 109.47389 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47092 * 119.99918 * 3 2 1 7 7 C 1.37878 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99754 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99715 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46978 * 179.97438 * 9 7 2 11 11 C 1.50108 * 111.00212 * 170.21663 * 10 9 7 12 12 C 1.48745 * 102.45147 * 145.68480 * 11 10 9 13 13 H 1.09003 * 108.10157 * 66.75095 * 12 11 10 14 14 C 1.49196 * 131.38783 * 203.08311 * 12 11 10 15 15 C 1.55897 * 100.17417 * 155.63990 * 14 12 11 16 16 O 1.45391 * 106.57207 * 338.36278 * 15 14 12 17 17 C 1.41654 * 107.04956 * 348.18550 * 16 15 14 18 18 C 1.50704 * 111.77199 * 279.91683 * 17 16 15 19 19 O 1.20824 * 119.99736 * 126.83642 * 18 17 16 20 20 O 1.34227 * 119.99896 * 306.83616 * 18 17 16 21 21 C 1.49296 * 110.99889 * 290.13042 * 10 9 7 22 22 H 0.96999 * 119.99454 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47471 * 60.00331 * 9 7 2 24 24 H 1.08991 * 109.47500 * 299.99989 * 9 7 2 25 25 H 1.09007 * 110.81409 * 263.92046 * 11 10 9 26 26 H 1.08996 * 110.81444 * 27.43747 * 11 10 9 27 27 H 1.08995 * 111.32149 * 273.20881 * 14 12 11 28 28 H 1.08996 * 111.32323 * 37.88133 * 14 12 11 29 29 H 1.08994 * 109.71412 * 219.31078 * 15 14 12 30 30 H 1.09007 * 110.53106 * 97.86150 * 15 14 12 31 31 H 0.96705 * 116.99818 * 180.02562 * 20 18 17 32 32 H 1.08994 * 110.28647 * 4.85189 * 21 10 9 33 33 H 1.08999 * 110.28521 * 126.96309 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5055 -4.9220 0.2387 12 6 2.3000 -5.8675 -0.5904 13 1 3.2956 -5.9465 -0.1538 14 6 1.9502 -7.1889 -1.1884 15 6 2.9680 -7.2352 -2.3683 16 8 3.3553 -5.8597 -2.6362 17 6 2.4593 -5.0289 -1.9196 18 6 1.1458 -4.8700 -2.6412 19 8 0.1091 -5.1072 -2.0679 20 8 1.1278 -4.4648 -3.9207 21 6 2.9179 -3.7107 -1.3081 22 1 -0.4849 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5566 0.8902 25 1 1.5501 -5.1990 1.2920 26 1 0.4729 -4.8767 -0.1075 27 1 2.1280 -8.0019 -0.4845 28 1 0.9227 -7.2000 -1.5518 29 1 2.4911 -7.6663 -3.2485 30 1 3.8445 -7.8226 -2.0944 31 1 0.2614 -4.3772 -4.3413 32 1 2.6374 -2.8774 -1.9524 33 1 3.9965 -3.7218 -1.1514 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704988716.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:37 Heat of formation + Delta-G solvation = -93.958011 kcal Electronic energy + Delta-G solvation = -18494.401577 eV Core-core repulsion = 15521.554237 eV Total energy + Delta-G solvation = -2972.847340 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.68396 -38.88206 -36.76480 -35.80181 -33.03939 -32.09224 -29.85732 -27.91648 -26.18876 -24.20970 -23.19132 -21.07466 -20.15198 -19.97453 -18.19768 -17.22638 -16.48379 -15.90435 -15.29988 -15.16740 -14.73171 -14.48487 -14.01147 -13.71564 -13.18464 -12.85589 -12.41646 -12.04771 -11.93520 -11.70665 -11.52942 -11.34453 -11.18736 -10.96960 -10.66351 -10.47973 -10.21901 -10.08313 -9.89228 -9.55194 -9.22998 -8.46175 -7.46155 -6.04005 -4.06703 2.32409 3.03269 3.30672 3.33908 3.37520 3.40704 4.35158 4.49045 4.54124 4.62937 4.92998 5.15967 5.27495 5.33727 5.35996 5.52093 5.64516 5.72835 5.95452 6.02395 6.12238 6.30312 6.33128 6.40895 6.70770 6.78670 6.97773 7.25728 7.72226 7.88515 8.06835 8.07308 8.42020 9.00833 9.57803 11.06575 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.036027 B = 0.007250 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.010597 B = 3861.408031 C = 3948.972644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.186 3.814 10 N -0.510 5.510 11 C 0.040 3.960 12 C -0.113 4.113 13 H 0.094 0.906 14 C -0.141 4.141 15 C 0.041 3.959 16 O -0.342 6.342 17 C 0.071 3.929 18 C 0.479 3.521 19 O -0.498 6.498 20 O -0.505 6.505 21 C 0.069 3.931 22 H 0.262 0.738 23 H -0.007 1.007 24 H 0.035 0.965 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.405 0.595 32 H 0.083 0.917 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 -13.469 -4.974 14.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.083 0.917 9 C 0.061 3.939 10 N -0.236 5.236 11 C -0.087 4.087 12 C -0.132 4.132 13 H 0.112 0.888 14 C -0.179 4.179 15 C -0.036 4.036 16 O -0.260 6.260 17 C 0.028 3.972 18 C 0.320 3.680 19 O -0.386 6.386 20 O -0.315 6.315 21 C -0.059 4.059 22 H 0.072 0.928 23 H 0.011 0.989 24 H 0.053 0.947 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.263 0.737 32 H 0.102 0.898 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.076 -13.255 -4.357 14.536 hybrid contribution -0.952 0.784 -0.927 1.543 sum 3.124 -12.471 -5.284 13.900 Atomic orbital electron populations 1.69965 1.06091 1.26973 1.50601 1.25004 0.94878 0.99384 0.95292 0.86533 0.79426 0.82573 0.78736 1.20202 1.21340 1.20062 1.21117 0.93587 0.89793 1.50594 0.91738 1.19944 0.90076 0.87352 0.96548 1.65371 1.29237 1.02705 1.26324 1.22102 0.98236 0.88866 0.99457 1.22115 1.03460 0.93550 0.94118 0.88822 1.22002 1.00563 0.97613 0.97755 1.24111 0.98353 0.83672 0.97429 1.88604 1.51683 1.15543 1.70136 1.23294 0.85197 0.98389 0.90346 1.23788 0.92075 0.72187 0.79905 1.90659 1.34803 1.46638 1.66490 1.84603 1.40138 1.79529 1.27272 1.22694 1.01075 0.91181 0.90981 0.92804 0.98900 0.94697 0.90091 0.90573 0.89171 0.89714 0.91412 0.89343 0.73703 0.89835 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.50 8.55 -34.44 -0.29 -14.79 16 8 H 0.06 1.79 7.79 -52.49 -0.41 1.38 16 9 C 0.19 4.94 4.36 -4.98 -0.02 4.92 16 10 N -0.51 -11.21 5.27 -234.08 -1.23 -12.44 16 11 C 0.04 0.75 6.15 -4.11 -0.03 0.73 16 12 C -0.11 -1.76 2.47 -91.85 -0.23 -1.99 16 13 H 0.09 1.40 8.04 -51.93 -0.42 0.98 16 14 C -0.14 -1.75 6.42 -27.05 -0.17 -1.92 16 15 C 0.04 0.48 7.59 38.71 0.29 0.77 16 16 O -0.34 -5.44 11.21 -35.71 -0.40 -5.84 16 17 C 0.07 1.24 1.53 -89.36 -0.14 1.10 16 18 C 0.48 8.67 6.24 36.01 0.22 8.89 16 19 O -0.50 -9.78 13.49 -18.75 -0.25 -10.03 16 20 O -0.50 -7.95 13.42 -40.91 -0.55 -8.50 16 21 C 0.07 1.38 5.77 -2.81 -0.02 1.36 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H -0.01 -0.20 8.06 -51.93 -0.42 -0.61 16 24 H 0.03 0.99 8.09 -51.93 -0.42 0.57 16 25 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 26 H 0.08 1.57 5.48 -51.93 -0.28 1.28 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 1.15 6.64 -51.93 -0.34 0.80 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.40 4.46 9.10 45.56 0.41 4.87 16 32 H 0.08 1.84 7.14 -51.93 -0.37 1.47 16 33 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 LS Contribution 271.45 15.07 4.09 4.09 Total: -1.00 -32.48 271.45 -6.60 -39.08 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -3.50 Total: 2.50 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -0.47 Total: 0.58 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: -0.50 Total: -38.61 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -1.20 Total: -24.37 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.48 -6.60 -39.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704988716.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.880 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds