Wall clock time and date at job start Mon Mar 30 2020 03:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86796 * 119.99869 * 2 1 4 4 H 1.48508 * 109.46899 * 239.99637 * 3 2 1 5 5 H 1.48500 * 109.47389 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47092 * 119.99918 * 3 2 1 7 7 C 1.37878 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99754 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99715 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46978 * 179.97438 * 9 7 2 11 11 C 1.50108 * 111.00212 * 170.21663 * 10 9 7 12 12 C 1.48745 * 102.45147 * 145.68480 * 11 10 9 13 13 H 1.09003 * 108.10157 * 66.75095 * 12 11 10 14 14 C 1.49196 * 131.38783 * 203.08311 * 12 11 10 15 15 C 1.55897 * 100.17417 * 155.63990 * 14 12 11 16 16 O 1.45391 * 106.57207 * 338.36278 * 15 14 12 17 17 C 1.41654 * 107.04956 * 348.18550 * 16 15 14 18 18 C 1.50704 * 111.77199 * 279.91683 * 17 16 15 19 19 O 1.20824 * 119.99736 * 126.83642 * 18 17 16 20 20 O 1.34227 * 119.99896 * 306.83616 * 18 17 16 21 21 C 1.49296 * 110.99889 * 290.13042 * 10 9 7 22 22 H 0.96999 * 119.99454 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47471 * 60.00331 * 9 7 2 24 24 H 1.08991 * 109.47500 * 299.99989 * 9 7 2 25 25 H 1.09007 * 110.81409 * 263.92046 * 11 10 9 26 26 H 1.08996 * 110.81444 * 27.43747 * 11 10 9 27 27 H 1.08995 * 111.32149 * 273.20881 * 14 12 11 28 28 H 1.08996 * 111.32323 * 37.88133 * 14 12 11 29 29 H 1.08994 * 109.71412 * 219.31078 * 15 14 12 30 30 H 1.09007 * 110.53106 * 97.86150 * 15 14 12 31 31 H 0.96705 * 116.99818 * 180.02562 * 20 18 17 32 32 H 1.08994 * 110.28647 * 4.85189 * 21 10 9 33 33 H 1.08999 * 110.28521 * 126.96309 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5055 -4.9220 0.2387 12 6 2.3000 -5.8675 -0.5904 13 1 3.2956 -5.9465 -0.1538 14 6 1.9502 -7.1889 -1.1884 15 6 2.9680 -7.2352 -2.3683 16 8 3.3553 -5.8597 -2.6362 17 6 2.4593 -5.0289 -1.9196 18 6 1.1458 -4.8700 -2.6412 19 8 0.1091 -5.1072 -2.0679 20 8 1.1278 -4.4648 -3.9207 21 6 2.9179 -3.7107 -1.3081 22 1 -0.4849 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5566 0.8902 25 1 1.5501 -5.1990 1.2920 26 1 0.4729 -4.8767 -0.1075 27 1 2.1280 -8.0019 -0.4845 28 1 0.9227 -7.2000 -1.5518 29 1 2.4911 -7.6663 -3.2485 30 1 3.8445 -7.8226 -2.0944 31 1 0.2614 -4.3772 -4.3413 32 1 2.6374 -2.8774 -1.9524 33 1 3.9965 -3.7218 -1.1514 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704988716.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:37 Heat of formation + Delta-G solvation = -119.926663 kcal Electronic energy + Delta-G solvation = -18495.527662 eV Core-core repulsion = 15521.554237 eV Total energy + Delta-G solvation = -2973.973425 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.02028 -40.22012 -38.25325 -37.23030 -35.02895 -33.46836 -31.47907 -29.43355 -27.95163 -25.78794 -24.67428 -22.60299 -21.67600 -21.31130 -19.54102 -18.64796 -18.44758 -17.32992 -16.89046 -16.50404 -16.24540 -15.96002 -15.53516 -15.14256 -14.77706 -14.58512 -14.00980 -13.70034 -13.28116 -13.06445 -13.00961 -12.90044 -12.71448 -12.56278 -12.48864 -12.25231 -11.83471 -11.47988 -11.44430 -11.25186 -10.80489 -10.65168 -9.27232 -8.23627 -6.35527 0.91380 1.40493 1.44218 1.52174 1.78581 2.04414 2.38196 2.99489 3.09138 3.25240 3.48408 3.77894 3.97445 3.99846 4.25603 4.34829 4.46261 4.59601 4.70679 4.74865 4.80136 4.86247 4.93492 5.00505 5.06841 5.13979 5.45560 5.53183 5.61042 5.89197 6.04431 6.34827 6.78547 6.79959 7.34663 8.87432 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.036027 B = 0.007250 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.010597 B = 3861.408031 C = 3948.972644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.067 0.933 9 C 0.207 3.793 10 N -0.517 5.517 11 C 0.039 3.961 12 C -0.103 4.103 13 H 0.108 0.892 14 C -0.133 4.133 15 C 0.037 3.963 16 O -0.353 6.353 17 C 0.071 3.929 18 C 0.475 3.525 19 O -0.521 6.521 20 O -0.505 6.505 21 C 0.069 3.931 22 H 0.265 0.735 23 H -0.041 1.041 24 H 0.005 0.995 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.126 0.874 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.423 0.577 32 H 0.053 0.947 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.345 -14.559 -5.186 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.085 0.915 9 C 0.080 3.920 10 N -0.242 5.242 11 C -0.088 4.088 12 C -0.122 4.122 13 H 0.126 0.874 14 C -0.171 4.171 15 C -0.038 4.038 16 O -0.271 6.271 17 C 0.027 3.973 18 C 0.317 3.683 19 O -0.410 6.410 20 O -0.318 6.318 21 C -0.059 4.059 22 H 0.074 0.926 23 H -0.024 1.024 24 H 0.023 0.977 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.141 0.859 31 H 0.285 0.715 32 H 0.072 0.928 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.846 -14.372 -4.590 16.180 hybrid contribution -1.523 1.059 -0.910 2.066 sum 4.323 -13.313 -5.500 15.039 Atomic orbital electron populations 1.70105 1.07884 1.28107 1.51386 1.25979 0.95758 1.03427 0.94532 0.85389 0.78137 0.77527 0.79314 1.19127 1.20795 1.18972 1.21447 0.93843 0.90841 1.50627 0.91466 1.19510 0.89972 0.89079 0.93424 1.65277 1.28123 1.03025 1.27807 1.22102 0.97255 0.88347 1.01060 1.22098 1.03378 0.94472 0.92300 0.87402 1.22044 1.00025 0.96686 0.98332 1.24422 0.99782 0.81806 0.97819 1.88587 1.51262 1.17222 1.70075 1.23026 0.85009 0.97654 0.91593 1.24043 0.92168 0.71771 0.80336 1.90651 1.35596 1.47741 1.67051 1.84558 1.41798 1.78916 1.26508 1.22559 1.01542 0.91965 0.89880 0.92597 1.02361 0.97701 0.88487 0.92895 0.85531 0.91145 0.90047 0.85948 0.71540 0.92794 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 2 C 0.00 0.07 5.46 84.65 0.46 0.54 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.53 -30.64 8.55 25.60 0.22 -30.42 16 8 H 0.07 3.76 7.79 -2.91 -0.02 3.74 16 9 C 0.21 11.47 4.36 85.55 0.37 11.85 16 10 N -0.52 -23.08 5.27 -894.51 -4.71 -27.79 16 11 C 0.04 1.45 6.15 84.33 0.52 1.97 16 12 C -0.10 -3.03 2.47 -11.59 -0.03 -3.06 16 13 H 0.11 2.89 8.04 -2.39 -0.02 2.87 16 14 C -0.13 -2.88 6.42 30.38 0.20 -2.68 16 15 C 0.04 0.74 7.59 72.98 0.55 1.29 16 16 O -0.35 -10.38 11.21 -148.35 -1.66 -12.04 16 17 C 0.07 2.41 1.53 -9.98 -0.02 2.40 16 18 C 0.47 17.23 6.24 71.24 0.44 17.68 16 19 O -0.52 -20.88 13.49 21.97 0.30 -20.58 16 20 O -0.50 -15.84 13.42 -49.80 -0.67 -16.51 16 21 C 0.07 2.76 5.77 85.63 0.49 3.25 16 22 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 23 H -0.04 -2.53 8.06 -2.38 -0.02 -2.55 16 24 H 0.00 0.29 8.09 -2.39 -0.02 0.28 16 25 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 26 H 0.05 2.25 5.48 -2.39 -0.01 2.24 16 27 H 0.13 1.84 8.14 -2.39 -0.02 1.83 16 28 H 0.07 1.77 6.64 -2.39 -0.02 1.75 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.12 1.67 8.14 -2.38 -0.02 1.66 16 31 H 0.42 9.26 9.10 -74.05 -0.67 8.58 16 32 H 0.05 2.46 7.14 -2.39 -0.02 2.44 16 33 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 Total: -1.00 -71.82 271.45 -0.76 -72.59 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.45 Total: 11.99 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 3.22 Total: 2.81 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -4.42 Total: -84.99 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -2.03 Total: -49.13 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -71.82 -0.76 -72.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704988716.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.338 kcal (2) G-P(sol) polarization free energy of solvation -71.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds