Wall clock time and date at job start Mon Mar 30 2020 03:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46907 * 179.97438 * 9 7 2 11 11 C 1.48578 * 110.99844 * 170.00026 * 10 9 7 12 12 C 1.54185 * 104.47622 * 159.76520 * 11 10 9 13 13 H 1.08998 * 112.48304 * 98.08175 * 12 11 10 14 14 C 1.54581 * 109.04151 * 223.61355 * 12 11 10 15 15 C 1.54978 * 102.12017 * 133.21526 * 14 12 11 16 16 O 1.44288 * 103.48610 * 322.51937 * 15 14 12 17 17 C 1.43788 * 107.25518 * 40.02719 * 16 15 14 18 18 C 1.50696 * 111.76508 * 96.84349 * 17 16 15 19 19 O 1.20818 * 120.00248 * 215.09213 * 18 17 16 20 20 O 1.34235 * 119.99995 * 35.08414 * 18 17 16 21 21 C 1.48469 * 111.00012 * 285.40280 * 10 9 7 22 22 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 24 24 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 25 25 H 1.08996 * 110.43441 * 278.51533 * 11 10 9 26 26 H 1.08995 * 110.43128 * 41.01517 * 11 10 9 27 27 H 1.09004 * 110.87260 * 251.37218 * 14 12 11 28 28 H 1.09002 * 110.87434 * 14.85118 * 14 12 11 29 29 H 1.08997 * 110.62123 * 81.02201 * 15 14 12 30 30 H 1.09003 * 110.61822 * 203.86594 * 15 14 12 31 31 H 0.96696 * 117.00003 * 180.02562 * 20 18 17 32 32 H 1.09003 * 110.35554 * 320.15129 * 21 10 9 33 33 H 1.09002 * 110.34902 * 82.43575 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6157 0.0015 11 6 1.5137 -4.9079 0.2434 12 6 2.4910 -5.9744 -0.2900 13 1 3.0899 -6.4243 0.5018 14 6 1.6981 -7.0244 -1.1014 15 6 2.5603 -7.1653 -2.3815 16 8 3.0165 -5.8192 -2.6299 17 6 3.3436 -5.2379 -1.3561 18 6 4.8180 -5.3345 -1.0598 19 8 5.1960 -5.5110 0.0740 20 8 5.7113 -5.2246 -2.0557 21 6 2.8303 -3.7814 -1.3352 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6248 -2.5563 0.8920 24 1 0.6242 -2.5575 -0.8880 25 1 1.3382 -5.0519 1.3095 26 1 0.5732 -4.9446 -0.3063 27 1 1.6439 -7.9709 -0.5635 28 1 0.6998 -6.6577 -1.3402 29 1 3.4054 -7.8304 -2.2038 30 1 1.9561 -7.5280 -3.2132 31 1 6.6457 -5.2936 -1.8168 32 1 2.0904 -3.6290 -2.1210 33 1 3.6604 -3.0852 -1.4547 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704988718.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:39 Heat of formation + Delta-G solvation = -124.755857 kcal Electronic energy + Delta-G solvation = -18145.467527 eV Core-core repulsion = 15171.284692 eV Total energy + Delta-G solvation = -2974.182835 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.10356 -39.13084 -36.62648 -35.96866 -33.26778 -32.13161 -30.12205 -27.52219 -25.99477 -24.02374 -22.88496 -21.71004 -20.65577 -19.71897 -18.01553 -17.32239 -16.77290 -16.37331 -15.79121 -15.14242 -14.53080 -14.21140 -13.99118 -13.70667 -13.21288 -12.90992 -12.53923 -12.32418 -11.77957 -11.51455 -11.40513 -11.20317 -11.14871 -11.10600 -10.82300 -10.77604 -10.51892 -10.47327 -10.08667 -9.70097 -8.73421 -8.39904 -7.64975 -6.39759 -4.08938 2.22116 3.01513 3.44312 3.48603 3.52837 3.64710 4.28336 4.51190 4.55013 4.81865 4.86836 4.98778 5.16725 5.26425 5.36874 5.41506 5.46774 5.59994 5.71445 5.89585 5.98967 6.04940 6.22130 6.24490 6.51740 6.64481 6.82201 6.87885 7.52660 7.74135 7.98053 8.18527 8.54109 8.83286 9.61492 10.99689 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.030060 B = 0.007140 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.259648 B = 3920.703191 C = 4387.487589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.075 2.925 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.589 4.589 8 H 0.057 0.943 9 C 0.172 3.828 10 N -0.496 5.496 11 C 0.037 3.963 12 C -0.104 4.104 13 H 0.110 0.890 14 C -0.152 4.152 15 C 0.041 3.959 16 O -0.347 6.347 17 C 0.109 3.891 18 C 0.488 3.512 19 O -0.500 6.500 20 O -0.505 6.505 21 C 0.064 3.936 22 H 0.266 0.734 23 H 0.025 0.975 24 H -0.012 1.012 25 H 0.082 0.918 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.404 0.596 32 H 0.068 0.932 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.636 -14.621 -4.221 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.903 3.097 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.628 4.628 8 H 0.075 0.925 9 C 0.047 3.953 10 N -0.221 5.221 11 C -0.092 4.092 12 C -0.123 4.123 13 H 0.129 0.871 14 C -0.190 4.190 15 C -0.036 4.036 16 O -0.265 6.265 17 C 0.067 3.933 18 C 0.329 3.671 19 O -0.387 6.387 20 O -0.315 6.315 21 C -0.064 4.064 22 H 0.077 0.923 23 H 0.043 0.957 24 H 0.006 0.994 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.262 0.738 32 H 0.086 0.914 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.525 -12.742 -3.798 14.398 hybrid contribution 0.223 -2.009 -0.277 2.040 sum 5.748 -14.751 -4.075 16.348 Atomic orbital electron populations 1.70784 1.06868 1.30365 1.46973 1.25872 0.96465 1.02753 0.93768 0.83457 0.74714 0.74782 0.76761 1.21440 1.21338 1.20958 1.21954 0.94917 0.90768 1.55117 0.92455 1.20041 0.90689 0.89195 0.95415 1.65555 1.29932 1.02275 1.24309 1.23205 0.94667 0.89911 1.01389 1.23214 0.96228 0.95849 0.97048 0.87136 1.23358 0.99969 0.99614 0.96063 1.23685 0.97046 0.84773 0.98095 1.89007 1.85003 1.26575 1.25899 1.22764 0.86636 0.98435 0.85485 1.23457 0.89391 0.71687 0.82612 1.90707 1.80600 1.44456 1.22923 1.84639 1.21114 1.84379 1.41402 1.22978 1.00499 0.89666 0.93267 0.92347 0.95668 0.99398 0.89931 0.93662 0.89659 0.89612 0.92242 0.88221 0.73798 0.91397 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.82 13.65 55.43 0.76 -27.06 16 2 C 0.01 0.43 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.64 29.90 -169.99 -5.08 20.56 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.59 -16.95 8.97 -34.44 -0.31 -17.26 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.17 4.47 3.91 -4.98 -0.02 4.45 16 10 N -0.50 -11.03 5.32 -231.57 -1.23 -12.26 16 11 C 0.04 0.65 5.99 -2.28 -0.01 0.64 16 12 C -0.10 -1.59 3.53 -88.06 -0.31 -1.90 16 13 H 0.11 1.68 7.16 -51.93 -0.37 1.31 16 14 C -0.15 -1.74 6.69 -24.86 -0.17 -1.91 16 15 C 0.04 0.47 7.72 38.20 0.29 0.76 16 16 O -0.35 -5.47 10.62 -45.35 -0.48 -5.95 16 17 C 0.11 1.85 1.15 -89.91 -0.10 1.74 16 18 C 0.49 8.17 7.35 36.00 0.26 8.43 16 19 O -0.50 -9.35 16.61 -18.74 -0.31 -9.66 16 20 O -0.50 -6.94 13.27 -43.57 -0.58 -7.52 16 21 C 0.06 1.31 5.46 -2.20 -0.01 1.30 16 22 H 0.27 8.04 7.22 -40.82 -0.29 7.75 16 23 H 0.03 0.68 7.95 -51.93 -0.41 0.27 16 24 H -0.01 -0.31 7.62 -51.93 -0.40 -0.71 16 25 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 26 H 0.05 0.77 7.06 -51.93 -0.37 0.41 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 0.98 7.19 -51.93 -0.37 0.60 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.40 3.47 9.10 45.56 0.41 3.89 16 32 H 0.07 1.42 7.58 -51.93 -0.39 1.03 16 33 H 0.09 1.90 7.90 -51.93 -0.41 1.49 16 LS Contribution 276.11 15.07 4.16 4.16 Total: -1.00 -33.76 276.11 -6.74 -40.51 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -3.50 Total: 0.62 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -0.47 Total: -3.40 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: -0.48 Total: -39.32 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -1.37 Total: -23.13 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.56 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.76 -6.74 -40.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704988718.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.249 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds