Wall clock time and date at job start Mon Mar 30 2020 03:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46907 * 179.97438 * 9 7 2 11 11 C 1.48578 * 110.99844 * 170.00026 * 10 9 7 12 12 C 1.54185 * 104.47622 * 159.76520 * 11 10 9 13 13 H 1.08998 * 112.48304 * 98.08175 * 12 11 10 14 14 C 1.54581 * 109.04151 * 223.61355 * 12 11 10 15 15 C 1.54978 * 102.12017 * 133.21526 * 14 12 11 16 16 O 1.44288 * 103.48610 * 322.51937 * 15 14 12 17 17 C 1.43788 * 107.25518 * 40.02719 * 16 15 14 18 18 C 1.50696 * 111.76508 * 96.84349 * 17 16 15 19 19 O 1.20818 * 120.00248 * 215.09213 * 18 17 16 20 20 O 1.34235 * 119.99995 * 35.08414 * 18 17 16 21 21 C 1.48469 * 111.00012 * 285.40280 * 10 9 7 22 22 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 24 24 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 25 25 H 1.08996 * 110.43441 * 278.51533 * 11 10 9 26 26 H 1.08995 * 110.43128 * 41.01517 * 11 10 9 27 27 H 1.09004 * 110.87260 * 251.37218 * 14 12 11 28 28 H 1.09002 * 110.87434 * 14.85118 * 14 12 11 29 29 H 1.08997 * 110.62123 * 81.02201 * 15 14 12 30 30 H 1.09003 * 110.61822 * 203.86594 * 15 14 12 31 31 H 0.96696 * 117.00003 * 180.02562 * 20 18 17 32 32 H 1.09003 * 110.35554 * 320.15129 * 21 10 9 33 33 H 1.09002 * 110.34902 * 82.43575 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6157 0.0015 11 6 1.5137 -4.9079 0.2434 12 6 2.4910 -5.9744 -0.2900 13 1 3.0899 -6.4243 0.5018 14 6 1.6981 -7.0244 -1.1014 15 6 2.5603 -7.1653 -2.3815 16 8 3.0165 -5.8192 -2.6299 17 6 3.3436 -5.2379 -1.3561 18 6 4.8180 -5.3345 -1.0598 19 8 5.1960 -5.5110 0.0740 20 8 5.7113 -5.2246 -2.0557 21 6 2.8303 -3.7814 -1.3352 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6248 -2.5563 0.8920 24 1 0.6242 -2.5575 -0.8880 25 1 1.3382 -5.0519 1.3095 26 1 0.5732 -4.9446 -0.3063 27 1 1.6439 -7.9709 -0.5635 28 1 0.6998 -6.6577 -1.3402 29 1 3.4054 -7.8304 -2.2038 30 1 1.9561 -7.5280 -3.2132 31 1 6.6457 -5.2936 -1.8168 32 1 2.0904 -3.6290 -2.1210 33 1 3.6604 -3.0852 -1.4547 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704988718.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:39 Heat of formation + Delta-G solvation = -151.244522 kcal Electronic energy + Delta-G solvation = -18146.616161 eV Core-core repulsion = 15171.284692 eV Total energy + Delta-G solvation = -2975.331469 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.38586 -40.39798 -38.13403 -37.24332 -35.27935 -33.43898 -31.65086 -28.96944 -27.80107 -25.56471 -24.53059 -22.86789 -22.33097 -21.03414 -19.24446 -18.93366 -18.55387 -17.60652 -17.07561 -16.49173 -15.97179 -15.70010 -15.66553 -15.36199 -14.70541 -14.40856 -14.07140 -13.68578 -13.33618 -13.13868 -12.94106 -12.78546 -12.58152 -12.44042 -12.35714 -12.14467 -11.95168 -11.94126 -11.82209 -10.91750 -10.84707 -10.61191 -9.44951 -8.72613 -6.43333 0.90629 1.51293 1.60305 1.79240 1.83848 2.35102 2.52416 2.98452 3.10469 3.23520 3.43217 3.71885 3.88473 4.07470 4.14397 4.19287 4.33720 4.44031 4.50405 4.60690 4.67515 4.74337 4.81373 4.86222 4.91634 5.04162 5.36654 5.53381 5.68061 5.81150 6.06318 6.30039 6.54190 6.85431 7.35788 8.67090 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.030060 B = 0.007140 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.259648 B = 3920.703191 C = 4387.487589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.033 4.033 3 Si 1.121 2.879 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.604 4.604 8 H 0.047 0.953 9 C 0.185 3.815 10 N -0.515 5.515 11 C 0.034 3.966 12 C -0.099 4.099 13 H 0.114 0.886 14 C -0.142 4.142 15 C 0.034 3.966 16 O -0.363 6.363 17 C 0.112 3.888 18 C 0.492 3.508 19 O -0.524 6.524 20 O -0.499 6.499 21 C 0.064 3.936 22 H 0.255 0.745 23 H 0.009 0.991 24 H -0.029 1.029 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.119 0.881 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.127 0.873 31 H 0.427 0.573 32 H 0.056 0.944 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.473 -15.962 -4.751 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.231 4.231 3 Si 0.942 3.058 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.642 4.642 8 H 0.066 0.934 9 C 0.059 3.941 10 N -0.239 5.239 11 C -0.094 4.094 12 C -0.119 4.119 13 H 0.132 0.868 14 C -0.179 4.179 15 C -0.041 4.041 16 O -0.282 6.282 17 C 0.070 3.930 18 C 0.333 3.667 19 O -0.413 6.413 20 O -0.312 6.312 21 C -0.064 4.064 22 H 0.065 0.935 23 H 0.027 0.973 24 H -0.011 1.011 25 H 0.106 0.894 26 H 0.069 0.931 27 H 0.137 0.863 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.145 0.855 31 H 0.289 0.711 32 H 0.074 0.926 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.383 -14.126 -4.348 16.099 hybrid contribution -0.008 -1.667 -0.155 1.674 sum 6.375 -15.793 -4.503 17.616 Atomic orbital electron populations 1.70905 1.07726 1.29767 1.48687 1.27380 0.96556 1.06523 0.92632 0.82879 0.74045 0.70987 0.77887 1.19605 1.19921 1.20380 1.22257 0.94648 0.92387 1.54934 0.93442 1.19715 0.90669 0.90088 0.93659 1.65402 1.29657 1.03275 1.25599 1.23330 0.95431 0.88518 1.02131 1.23212 0.95724 0.95844 0.97074 0.86835 1.23368 0.99216 0.99757 0.95593 1.24027 0.98027 0.82930 0.99143 1.88986 1.85235 1.28877 1.25097 1.22517 0.87313 0.96289 0.86885 1.23343 0.89643 0.71176 0.82507 1.90698 1.81022 1.45760 1.23808 1.84582 1.22692 1.83559 1.40394 1.22835 0.99423 0.92227 0.91929 0.93535 0.97343 1.01114 0.89363 0.93090 0.86288 0.89546 0.90578 0.85540 0.71096 0.92624 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.85 13.65 21.45 0.29 -57.56 16 2 C -0.03 -1.94 5.46 84.65 0.46 -1.48 16 3 Si 1.12 51.45 29.90 68.60 2.05 53.50 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.60 -35.61 8.97 25.60 0.23 -35.38 16 8 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 9 C 0.19 9.96 3.91 85.55 0.33 10.30 16 10 N -0.51 -23.36 5.32 -886.54 -4.72 -28.08 16 11 C 0.03 1.18 5.99 86.38 0.52 1.70 16 12 C -0.10 -2.86 3.53 -9.13 -0.03 -2.89 16 13 H 0.11 3.23 7.16 -2.39 -0.02 3.21 16 14 C -0.14 -2.79 6.69 31.81 0.21 -2.57 16 15 C 0.03 0.67 7.72 72.66 0.56 1.23 16 16 O -0.36 -10.78 10.62 -139.30 -1.48 -12.26 16 17 C 0.11 3.70 1.15 -10.33 -0.01 3.69 16 18 C 0.49 15.84 7.35 71.23 0.52 16.37 16 19 O -0.52 -18.99 16.61 21.99 0.37 -18.62 16 20 O -0.50 -12.82 13.27 -47.35 -0.63 -13.45 16 21 C 0.06 2.68 5.46 86.49 0.47 3.15 16 22 H 0.26 15.92 7.22 -92.71 -0.67 15.25 16 23 H 0.01 0.48 7.95 -2.39 -0.02 0.46 16 24 H -0.03 -1.61 7.62 -2.39 -0.02 -1.63 16 25 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 26 H 0.05 1.73 7.06 -2.39 -0.02 1.71 16 27 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.09 1.72 7.19 -2.39 -0.02 1.70 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.43 6.40 9.10 -74.06 -0.67 5.72 16 32 H 0.06 2.41 7.58 -2.39 -0.02 2.39 16 33 H 0.07 3.05 7.90 -2.39 -0.02 3.03 16 Total: -1.00 -73.72 276.11 -0.30 -74.02 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.55 Total: 8.34 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 3.27 Total: -5.89 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -4.43 Total: -85.64 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -1.74 Total: -44.34 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.05 Total: 53.50 kcal Total: -73.72 -0.30 -74.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704988718.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.225 kcal (2) G-P(sol) polarization free energy of solvation -73.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds