Wall clock time and date at job start Mon Mar 30 2020 03:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00041 * 2 1 4 4 H 1.48498 * 109.47344 * 270.00152 * 3 2 1 5 5 H 1.48504 * 109.46975 * 30.00532 * 3 2 1 6 6 H 1.48500 * 109.46957 * 150.00008 * 3 2 1 7 7 C 1.37879 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99849 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00210 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46954 * 179.97438 * 9 7 2 11 11 C 1.49744 * 110.99844 * 197.38914 * 10 9 7 12 12 C 1.53407 * 102.56238 * 211.45873 * 11 10 9 13 13 H 1.09003 * 114.04425 * 284.00839 * 12 11 10 14 14 C 1.53813 * 117.68033 * 145.71567 * 12 11 10 15 15 C 1.56162 * 100.13115 * 216.68370 * 14 12 11 16 16 O 1.46783 * 106.75354 * 23.11759 * 15 14 12 17 17 C 1.38201 * 105.56243 * 11.00220 * 16 15 14 18 18 C 1.50697 * 106.70718 * 69.42788 * 17 16 15 19 19 O 1.20826 * 120.00161 * 158.16249 * 18 17 16 20 20 O 1.34234 * 120.00115 * 338.16359 * 18 17 16 21 21 C 1.49417 * 131.21988 * 200.79545 * 17 16 15 22 22 H 0.96999 * 119.99590 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47453 * 59.99509 * 9 7 2 24 24 H 1.09005 * 109.46713 * 299.99352 * 9 7 2 25 25 H 1.09002 * 110.78985 * 93.19329 * 11 10 9 26 26 H 1.08999 * 110.79096 * 329.72503 * 11 10 9 27 27 H 1.08998 * 111.27457 * 334.40065 * 14 12 11 28 28 H 1.08995 * 111.27760 * 98.91077 * 14 12 11 29 29 H 1.08994 * 110.00598 * 142.97467 * 15 14 12 30 30 H 1.09003 * 109.99956 * 264.29214 * 15 14 12 31 31 H 0.96701 * 117.00089 * 179.97438 * 20 18 17 32 32 H 1.09001 * 110.43936 * 273.38901 * 21 17 16 33 33 H 1.09000 * 110.43730 * 35.89859 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 -0.0001 11 6 5.4377 -2.6404 0.4183 12 6 5.9640 -3.8458 -0.3712 13 1 5.6599 -4.8102 0.0357 14 6 7.4183 -3.7940 -0.8692 15 6 7.2623 -4.5110 -2.2477 16 8 5.8554 -4.3696 -2.6414 17 6 5.3145 -3.4519 -1.7609 18 6 5.9302 -2.1173 -2.0937 19 8 5.3722 -1.0964 -1.7678 20 8 7.0987 -2.0627 -2.7522 21 6 3.8990 -3.1837 -1.3646 22 1 -0.4849 0.8401 0.0004 23 1 3.8746 -0.6807 0.8905 24 1 3.8752 -0.6796 -0.8896 25 1 5.5212 -2.8142 1.4911 26 1 5.9637 -1.7300 0.1306 27 1 7.7571 -2.7656 -0.9945 28 1 8.0832 -4.3485 -0.2071 29 1 7.9133 -4.0440 -2.9867 30 1 7.5095 -5.5680 -2.1482 31 1 7.4541 -1.1839 -2.9435 32 1 3.4360 -2.4818 -2.0582 33 1 3.3315 -4.1136 -1.3272 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704988722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:42 Heat of formation + Delta-G solvation = -61.464782 kcal Electronic energy + Delta-G solvation = -18844.056804 eV Core-core repulsion = 15872.618476 eV Total energy + Delta-G solvation = -2971.438328 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.34782 -38.63100 -37.43284 -35.39590 -32.96372 -32.02132 -30.08839 -27.84314 -26.52652 -24.17965 -22.88784 -21.05683 -20.48697 -19.64138 -18.22833 -17.70412 -16.64010 -16.56691 -15.53651 -14.97428 -14.65328 -14.20454 -14.07685 -13.48750 -13.27941 -12.69876 -12.65440 -12.31846 -12.22222 -11.77558 -11.53952 -11.26925 -11.12060 -11.01538 -10.64829 -10.46069 -10.14686 -9.99847 -9.72206 -9.49000 -9.17650 -8.46396 -7.45785 -5.95247 -3.89954 2.17662 2.99295 3.37032 3.38849 3.43281 3.49015 4.28276 4.37552 4.52655 4.65463 4.85866 5.06325 5.11523 5.32256 5.37897 5.41823 5.42722 5.68915 5.79095 5.89203 6.02464 6.14010 6.19997 6.31119 6.46879 6.69933 6.81822 7.31907 7.62671 7.79328 7.89256 8.16837 8.74018 9.15102 9.67823 11.18246 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.040549 B = 0.008117 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.351023 B = 3448.828918 C = 3658.914912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.504 4.504 8 H 0.079 0.921 9 C 0.136 3.864 10 N -0.488 5.488 11 C 0.029 3.971 12 C -0.133 4.133 13 H 0.125 0.875 14 C -0.156 4.156 15 C 0.054 3.946 16 O -0.335 6.335 17 C 0.092 3.908 18 C 0.437 3.563 19 O -0.484 6.484 20 O -0.515 6.515 21 C 0.082 3.918 22 H 0.262 0.738 23 H 0.021 0.979 24 H 0.042 0.958 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.396 0.604 32 H 0.086 0.914 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.620 -7.464 -3.730 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.703 3.297 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.543 4.543 8 H 0.097 0.903 9 C 0.010 3.990 10 N -0.214 5.214 11 C -0.099 4.099 12 C -0.153 4.153 13 H 0.143 0.857 14 C -0.194 4.194 15 C -0.022 4.022 16 O -0.252 6.252 17 C 0.047 3.953 18 C 0.279 3.721 19 O -0.371 6.371 20 O -0.327 6.327 21 C -0.046 4.046 22 H 0.072 0.928 23 H 0.039 0.961 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.254 0.746 32 H 0.104 0.896 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 16.721 -7.802 -3.372 18.757 hybrid contribution 1.275 2.186 -0.578 2.595 sum 17.996 -5.616 -3.949 19.261 Atomic orbital electron populations 1.69901 1.06063 1.26618 1.51844 1.24855 0.94679 0.98730 0.95122 0.86848 0.80230 0.84105 0.78470 1.20413 1.21436 1.19300 1.21097 0.88977 0.94622 1.49564 0.90307 1.20825 0.96681 0.84025 0.97493 1.65346 1.13566 1.23322 1.19146 1.23190 0.91187 0.94950 1.00539 1.24312 0.94420 1.01724 0.94801 0.85675 1.23278 0.96780 1.02769 0.96538 1.24329 0.81738 1.00379 0.95708 1.88208 1.23946 1.60616 1.52404 1.22477 0.98962 0.82899 0.90921 1.25422 0.78397 0.94528 0.73750 1.90801 1.60527 1.37327 1.48397 1.84818 1.37939 1.38889 1.71076 1.22083 0.88284 1.01935 0.92262 0.92846 0.96133 0.94109 0.89772 0.92927 0.89398 0.89484 0.89463 0.90138 0.74579 0.89567 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.61 13.96 55.43 0.77 -27.83 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 22.82 27.47 -169.99 -4.67 18.16 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.27 -6.82 6.54 56.52 0.37 -6.45 16 7 C -0.50 -14.93 9.58 -34.44 -0.33 -15.26 16 8 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 9 C 0.14 3.47 3.02 -4.98 -0.02 3.46 16 10 N -0.49 -10.50 5.18 -233.11 -1.21 -11.70 16 11 C 0.03 0.50 5.77 -2.02 -0.01 0.49 16 12 C -0.13 -1.84 4.03 -87.02 -0.35 -2.19 16 13 H 0.13 1.59 8.14 -51.93 -0.42 1.17 16 14 C -0.16 -1.67 6.16 -24.61 -0.15 -1.82 16 15 C 0.05 0.58 6.71 38.85 0.26 0.84 16 16 O -0.34 -4.99 11.07 -46.69 -0.52 -5.50 16 17 C 0.09 1.49 2.38 -90.57 -0.22 1.28 16 18 C 0.44 7.17 4.77 36.00 0.17 7.34 16 19 O -0.48 -9.81 11.06 -18.75 -0.21 -10.02 16 20 O -0.51 -6.20 8.67 -45.87 -0.40 -6.60 16 21 C 0.08 1.61 5.69 -4.08 -0.02 1.58 16 22 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 23 H 0.02 0.54 7.04 -51.93 -0.37 0.18 16 24 H 0.04 1.09 4.13 -52.08 -0.22 0.88 16 25 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.05 0.95 5.57 -51.93 -0.29 0.66 16 27 H 0.09 0.98 5.57 -51.93 -0.29 0.69 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.87 6.95 -51.93 -0.36 0.51 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.40 3.25 9.10 45.56 0.41 3.67 16 32 H 0.09 1.89 6.97 -51.93 -0.36 1.53 16 33 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 LS Contribution 254.17 15.07 3.83 3.83 Total: -1.00 -34.35 254.17 -6.33 -40.67 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -3.17 Total: 1.36 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -0.76 Total: -2.36 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: -0.43 Total: -39.54 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -1.12 Total: -22.12 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.67 Total: 18.16 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -34.35 -6.33 -40.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704988722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.790 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds