Wall clock time and date at job start Mon Mar 30 2020 03:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00041 * 2 1 4 4 H 1.48498 * 109.47344 * 270.00152 * 3 2 1 5 5 H 1.48504 * 109.46975 * 30.00532 * 3 2 1 6 6 H 1.48500 * 109.46957 * 150.00008 * 3 2 1 7 7 C 1.37879 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99849 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00210 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46954 * 179.97438 * 9 7 2 11 11 C 1.49744 * 110.99844 * 197.38914 * 10 9 7 12 12 C 1.53407 * 102.56238 * 211.45873 * 11 10 9 13 13 H 1.09003 * 114.04425 * 284.00839 * 12 11 10 14 14 C 1.53813 * 117.68033 * 145.71567 * 12 11 10 15 15 C 1.56162 * 100.13115 * 216.68370 * 14 12 11 16 16 O 1.46783 * 106.75354 * 23.11759 * 15 14 12 17 17 C 1.38201 * 105.56243 * 11.00220 * 16 15 14 18 18 C 1.50697 * 106.70718 * 69.42788 * 17 16 15 19 19 O 1.20826 * 120.00161 * 158.16249 * 18 17 16 20 20 O 1.34234 * 120.00115 * 338.16359 * 18 17 16 21 21 C 1.49417 * 131.21988 * 200.79545 * 17 16 15 22 22 H 0.96999 * 119.99590 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47453 * 59.99509 * 9 7 2 24 24 H 1.09005 * 109.46713 * 299.99352 * 9 7 2 25 25 H 1.09002 * 110.78985 * 93.19329 * 11 10 9 26 26 H 1.08999 * 110.79096 * 329.72503 * 11 10 9 27 27 H 1.08998 * 111.27457 * 334.40065 * 14 12 11 28 28 H 1.08995 * 111.27760 * 98.91077 * 14 12 11 29 29 H 1.08994 * 110.00598 * 142.97467 * 15 14 12 30 30 H 1.09003 * 109.99956 * 264.29214 * 15 14 12 31 31 H 0.96701 * 117.00089 * 179.97438 * 20 18 17 32 32 H 1.09001 * 110.43936 * 273.38901 * 21 17 16 33 33 H 1.09000 * 110.43730 * 35.89859 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 -0.0001 11 6 5.4377 -2.6404 0.4183 12 6 5.9640 -3.8458 -0.3712 13 1 5.6599 -4.8102 0.0357 14 6 7.4183 -3.7940 -0.8692 15 6 7.2623 -4.5110 -2.2477 16 8 5.8554 -4.3696 -2.6414 17 6 5.3145 -3.4519 -1.7609 18 6 5.9302 -2.1173 -2.0937 19 8 5.3722 -1.0964 -1.7678 20 8 7.0987 -2.0627 -2.7522 21 6 3.8990 -3.1837 -1.3646 22 1 -0.4849 0.8401 0.0004 23 1 3.8746 -0.6807 0.8905 24 1 3.8752 -0.6796 -0.8896 25 1 5.5212 -2.8142 1.4911 26 1 5.9637 -1.7300 0.1306 27 1 7.7571 -2.7656 -0.9945 28 1 8.0832 -4.3485 -0.2071 29 1 7.9133 -4.0440 -2.9867 30 1 7.5095 -5.5680 -2.1482 31 1 7.4541 -1.1839 -2.9435 32 1 3.4360 -2.4818 -2.0582 33 1 3.3315 -4.1136 -1.3272 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704988722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:42 Heat of formation + Delta-G solvation = -89.492640 kcal Electronic energy + Delta-G solvation = -18845.272183 eV Core-core repulsion = 15872.618476 eV Total energy + Delta-G solvation = -2972.653707 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.56848 -39.82544 -38.76662 -36.70042 -34.95053 -33.44140 -31.67142 -29.29223 -28.15245 -25.52736 -24.32744 -22.51330 -21.73334 -21.08545 -19.43160 -18.96442 -18.78431 -17.78144 -16.88271 -16.47194 -15.99296 -15.71225 -15.50163 -14.98994 -14.67813 -14.35930 -14.12671 -14.00615 -13.47476 -13.17874 -12.89086 -12.81882 -12.73265 -12.30387 -12.14529 -11.87011 -11.74432 -11.53600 -11.48211 -11.32933 -10.77405 -10.59115 -9.16549 -8.28861 -6.28573 0.92942 1.29892 1.31246 1.43532 1.86698 2.23387 2.33010 2.96985 3.06141 3.18019 3.56390 3.86118 3.90926 4.11650 4.21223 4.26737 4.43590 4.53786 4.67973 4.76663 4.80014 4.88562 4.93490 5.01248 5.06477 5.18321 5.54342 5.64480 5.74324 5.89200 6.06222 6.54835 6.74014 6.94989 7.33107 8.88212 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.040549 B = 0.008117 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.351023 B = 3448.828918 C = 3658.914912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.945 3.055 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.512 4.512 8 H 0.038 0.962 9 C 0.152 3.848 10 N -0.508 5.508 11 C 0.027 3.973 12 C -0.117 4.117 13 H 0.141 0.859 14 C -0.145 4.145 15 C 0.049 3.951 16 O -0.351 6.351 17 C 0.088 3.912 18 C 0.445 3.555 19 O -0.530 6.530 20 O -0.495 6.495 21 C 0.081 3.919 22 H 0.266 0.734 23 H 0.013 0.987 24 H 0.038 0.962 25 H 0.097 0.903 26 H 0.046 0.954 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.416 0.584 32 H 0.050 0.950 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.955 -7.926 -3.791 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.188 4.188 3 Si 0.769 3.231 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.025 3.975 10 N -0.233 5.233 11 C -0.100 4.100 12 C -0.136 4.136 13 H 0.158 0.842 14 C -0.182 4.182 15 C -0.025 4.025 16 O -0.268 6.268 17 C 0.043 3.957 18 C 0.289 3.711 19 O -0.420 6.420 20 O -0.308 6.308 21 C -0.047 4.047 22 H 0.075 0.925 23 H 0.031 0.969 24 H 0.055 0.945 25 H 0.115 0.885 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.141 0.859 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.278 0.722 32 H 0.069 0.931 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 20.108 -8.288 -3.446 22.020 hybrid contribution 0.266 2.192 -0.628 2.295 sum 20.373 -6.096 -4.074 21.653 Atomic orbital electron populations 1.70042 1.07829 1.27898 1.53207 1.25744 0.95563 1.02763 0.94756 0.85745 0.79249 0.79291 0.78769 1.19979 1.20159 1.18087 1.21379 0.91421 0.93205 1.49072 0.94358 1.20468 0.93738 0.86590 0.96738 1.65172 1.16966 1.20645 1.20550 1.23247 0.88589 0.96441 1.01721 1.24338 0.96518 1.00700 0.92002 0.84151 1.23302 0.94823 1.03311 0.96797 1.24625 0.79513 1.02459 0.95908 1.88206 1.26185 1.59959 1.52453 1.22061 0.96935 0.83660 0.93073 1.25361 0.78879 0.93783 0.73060 1.90757 1.61997 1.38679 1.50568 1.84754 1.35871 1.40497 1.69713 1.21823 0.90977 1.00906 0.90960 0.92494 0.96866 0.94512 0.88513 0.93589 0.89753 0.85945 0.88327 0.87242 0.72234 0.93127 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.86 13.96 21.45 0.30 -61.56 16 2 C 0.01 0.53 5.47 84.66 0.46 0.99 16 3 Si 0.95 47.85 27.47 68.60 1.88 49.74 16 4 H -0.27 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.26 -12.43 6.54 99.48 0.65 -11.78 16 7 C -0.51 -31.60 9.58 25.60 0.25 -31.35 16 8 H 0.04 2.59 8.06 -2.91 -0.02 2.57 16 9 C 0.15 7.93 3.02 85.56 0.26 8.19 16 10 N -0.51 -22.12 5.18 -891.41 -4.61 -26.74 16 11 C 0.03 0.89 5.77 85.88 0.50 1.39 16 12 C -0.12 -2.88 4.03 -8.46 -0.03 -2.92 16 13 H 0.14 3.07 8.14 -2.39 -0.02 3.05 16 14 C -0.14 -2.43 6.16 31.97 0.20 -2.24 16 15 C 0.05 0.84 6.71 73.08 0.49 1.33 16 16 O -0.35 -9.54 11.07 -101.55 -1.12 -10.66 16 17 C 0.09 2.72 2.38 -10.76 -0.03 2.69 16 18 C 0.45 13.96 4.77 71.23 0.34 14.30 16 19 O -0.53 -21.33 11.06 21.96 0.24 -21.09 16 20 O -0.49 -10.42 8.67 -45.15 -0.39 -10.81 16 21 C 0.08 3.26 5.69 84.63 0.48 3.74 16 22 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 23 H 0.01 0.70 7.04 -2.39 -0.02 0.69 16 24 H 0.04 2.01 4.13 -4.81 -0.02 1.99 16 25 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 26 H 0.05 1.60 5.57 -2.39 -0.01 1.59 16 27 H 0.08 1.52 5.57 -2.39 -0.01 1.51 16 28 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.50 6.95 -2.39 -0.02 1.48 16 30 H 0.11 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.42 5.51 9.10 -74.06 -0.67 4.84 16 32 H 0.05 2.35 6.97 -2.39 -0.02 2.33 16 33 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 Total: -1.00 -77.45 254.17 -0.39 -77.84 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.40 Total: 7.15 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 2.91 Total: -3.88 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -4.31 Total: -88.29 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -1.27 Total: -42.56 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.88 Total: 49.74 kcal Total: -77.45 -0.39 -77.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704988722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.650 kcal (2) G-P(sol) polarization free energy of solvation -77.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds