Wall clock time and date at job start Mon Mar 30 2020 03:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47259 * 44.55535 * 3 2 1 5 5 C 1.37101 * 119.99979 * 264.06502 * 4 3 2 6 6 H 1.07991 * 120.00172 * 197.99983 * 5 4 3 7 7 C 1.38951 * 119.99970 * 18.00558 * 5 4 3 8 8 N 1.31414 * 120.00055 * 21.00825 * 7 5 4 9 9 Si 1.86804 * 119.99945 * 201.02096 * 7 5 4 10 10 H 1.48499 * 109.46722 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47422 * 119.99552 * 9 7 5 12 12 H 1.48498 * 109.46498 * 239.99611 * 9 7 5 13 13 C 1.34778 * 119.99992 * 84.34291 * 4 3 2 14 14 O 1.21287 * 119.99778 * 179.72899 * 13 4 3 15 15 C 1.50699 * 120.00060 * 359.72253 * 13 4 3 16 16 H 1.09010 * 110.33236 * 320.80078 * 15 13 4 17 17 C 1.54898 * 110.37286 * 83.17091 * 15 13 4 18 18 C 1.55140 * 101.65178 * 155.90190 * 17 15 13 19 19 H 1.09010 * 110.70523 * 205.96595 * 18 17 15 20 20 F 1.39891 * 110.70747 * 82.73408 * 18 17 15 21 21 C 1.54319 * 103.02007 * 324.34533 * 18 17 15 22 22 N 1.47443 * 107.23007 * 22.28644 * 21 18 17 23 23 H 1.08999 * 109.47034 * 284.55259 * 3 2 1 24 24 H 1.08996 * 109.46663 * 164.55699 * 3 2 1 25 25 H 0.97002 * 119.99989 * 180.02562 * 8 7 5 26 26 H 1.08999 * 110.99463 * 273.99128 * 17 15 13 27 27 H 1.09001 * 110.99050 * 37.81423 * 17 15 13 28 28 H 1.08998 * 109.89036 * 262.87786 * 21 18 17 29 29 H 1.08995 * 110.02029 * 141.76490 * 21 18 17 30 30 H 1.00896 * 111.00189 * 123.25800 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0969 -0.9833 -0.9690 5 6 3.4417 -2.2431 -0.5522 6 1 4.0620 -2.8679 -1.1776 7 6 2.9929 -2.7160 0.6748 8 7 1.9405 -2.1721 1.2437 9 14 3.8858 -4.1248 1.5160 10 1 5.0305 -4.5578 0.6749 11 1 4.3861 -3.6739 2.8395 12 1 2.9502 -5.2629 1.7020 13 6 3.2129 -0.6484 -2.2694 14 8 3.6222 -1.4615 -3.0708 15 6 2.8339 0.7363 -2.7275 16 1 1.9399 1.0768 -2.2049 17 6 4.0061 1.7214 -2.4937 18 6 3.7011 2.8255 -3.5400 19 1 4.6154 3.3414 -3.8337 20 9 2.7584 3.7315 -3.0426 21 6 3.1191 2.0287 -4.7266 22 7 2.6129 0.7524 -4.1893 23 1 2.9715 -0.2574 0.9947 24 1 2.9709 0.9914 -0.2736 25 1 1.6275 -2.5020 2.1005 26 1 3.9810 2.1251 -1.4815 27 1 4.9643 1.2437 -2.6982 28 1 3.8994 1.8376 -5.4632 29 1 2.3037 2.5868 -5.1867 30 1 1.6358 0.6298 -4.4087 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707462552.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:37 Heat of formation + Delta-G solvation = -35.272065 kcal Electronic energy + Delta-G solvation = -17626.891511 eV Core-core repulsion = 14565.421431 eV Total energy + Delta-G solvation = -3061.470080 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.097 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.66610 -39.28791 -36.98760 -35.64822 -34.27670 -31.89672 -29.87035 -29.06271 -27.39848 -24.99153 -22.18960 -21.16855 -18.99799 -17.92068 -17.24194 -16.63315 -16.28276 -15.76709 -14.97983 -14.81908 -14.50599 -14.11370 -13.38333 -13.11714 -13.01643 -12.81539 -12.45184 -12.11661 -11.79763 -11.63013 -11.45275 -11.25449 -11.16173 -10.94825 -10.86002 -10.56590 -10.37018 -10.29625 -9.25466 -8.75835 -8.06318 -8.00897 -6.49228 -3.98764 3.08707 3.22621 3.28752 3.47873 3.75300 3.94812 4.05429 4.24623 4.30665 4.45559 4.70909 4.89620 4.90696 5.04120 5.17240 5.33686 5.39998 5.62154 5.71602 5.74206 5.95027 6.08134 6.19047 6.49021 6.87652 7.43295 7.48266 7.94195 8.30942 8.71808 9.02764 9.21260 9.78067 10.57099 Molecular weight = 241.10amu Principal moments of inertia in cm(-1) A = 0.032843 B = 0.007778 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.332023 B = 3598.893775 C = 4004.637395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.244 3.756 3 C 0.220 3.780 4 N -0.447 5.447 5 C -0.311 4.311 6 H 0.109 0.891 7 C 0.030 3.970 8 N -0.879 5.879 9 Si 0.926 3.074 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.283 1.283 13 C 0.468 3.532 14 O -0.546 6.546 15 C 0.061 3.939 16 H 0.066 0.934 17 C -0.141 4.141 18 C 0.063 3.937 19 H 0.100 0.900 20 F -0.210 7.210 21 C 0.028 3.972 22 N -0.654 5.654 23 H 0.128 0.872 24 H 0.080 0.920 25 H 0.272 0.728 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.156 10.108 -3.769 11.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.074 4.074 3 C 0.093 3.907 4 N -0.169 5.169 5 C -0.438 4.438 6 H 0.127 0.873 7 C -0.173 4.173 8 N -0.519 5.519 9 Si 0.753 3.247 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.209 1.209 13 C 0.255 3.745 14 O -0.425 6.425 15 C -0.052 4.052 16 H 0.084 0.916 17 C -0.180 4.180 18 C 0.026 3.974 19 H 0.118 0.882 20 F -0.191 7.191 21 C -0.102 4.102 22 N -0.284 5.284 23 H 0.146 0.854 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.111 0.889 27 H 0.120 0.880 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.145 9.263 -4.176 10.974 hybrid contribution -0.229 -0.086 1.025 1.054 sum 3.916 9.177 -3.150 10.463 Atomic orbital electron populations 1.80894 1.13607 1.11019 1.09716 1.29361 0.95432 0.90710 0.91886 1.18786 0.81601 0.92090 0.98255 1.43640 1.57281 1.11626 1.04387 1.19748 1.29603 0.91535 1.02872 0.87343 1.25271 0.95064 0.99059 0.97920 1.69866 1.20088 1.43466 1.18439 0.85858 0.79567 0.80308 0.78980 1.19102 1.20493 1.20936 1.19769 0.84088 0.88541 0.82128 1.90546 1.48311 1.51577 1.52105 1.22360 0.97949 0.95522 0.89373 0.91637 1.23317 1.00155 0.94775 0.99752 1.22873 0.90701 0.88905 0.94954 0.88232 1.92822 1.67782 1.69278 1.89201 1.23245 1.00941 0.89507 0.96507 1.61335 1.24131 1.32464 1.10478 0.85400 0.90239 0.91725 0.88881 0.88029 0.88980 0.91779 0.83899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.33 18.54 42.15 0.78 -10.55 16 2 C 0.24 5.45 12.63 -20.76 -0.26 5.19 16 3 C 0.22 4.37 4.80 -6.83 -0.03 4.34 16 4 N -0.45 -10.36 2.60 -117.94 -0.31 -10.67 16 5 C -0.31 -7.96 9.32 -14.93 -0.14 -8.10 16 6 H 0.11 2.95 7.38 -52.49 -0.39 2.56 16 7 C 0.03 0.74 4.87 -17.47 -0.09 0.65 16 8 N -0.88 -22.19 9.47 55.50 0.53 -21.66 16 9 Si 0.93 19.57 29.60 -169.99 -5.03 14.54 16 10 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 C 0.47 10.60 6.85 -10.99 -0.08 10.52 16 14 O -0.55 -14.47 16.24 5.55 0.09 -14.38 16 15 C 0.06 1.08 2.72 -67.35 -0.18 0.89 16 16 H 0.07 1.17 6.50 -51.92 -0.34 0.83 16 17 C -0.14 -1.94 5.94 -24.60 -0.15 -2.09 16 18 C 0.06 0.74 4.75 -24.91 -0.12 0.62 16 19 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 20 F -0.21 -2.84 17.19 2.25 0.04 -2.80 16 21 C 0.03 0.34 7.40 -2.84 -0.02 0.32 16 22 N -0.65 -10.74 6.64 -105.06 -0.70 -11.44 16 23 H 0.13 2.58 6.46 -51.93 -0.34 2.25 16 24 H 0.08 1.23 5.44 -51.93 -0.28 0.95 16 25 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 26 H 0.09 1.12 6.82 -51.93 -0.35 0.77 16 27 H 0.10 1.41 8.05 -51.93 -0.42 0.99 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 30 H 0.34 5.37 8.91 -39.29 -0.35 5.02 16 LS Contribution 263.16 15.07 3.97 3.97 Total: -1.00 -31.40 263.16 -4.56 -35.96 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -2.87 Total: 4.70 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: -1.06 Total: 12.35 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.30 Total: -54.32 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.09 Total: -14.38 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.40 -4.56 -35.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707462552.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.689 kcal (2) G-P(sol) polarization free energy of solvation -31.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds