Wall clock time and date at job start Mon Mar 30 2020 03:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47259 * 44.55535 * 3 2 1 5 5 C 1.37101 * 119.99979 * 264.06502 * 4 3 2 6 6 H 1.07991 * 120.00172 * 197.99983 * 5 4 3 7 7 C 1.38951 * 119.99970 * 18.00558 * 5 4 3 8 8 N 1.31414 * 120.00055 * 21.00825 * 7 5 4 9 9 Si 1.86804 * 119.99945 * 201.02096 * 7 5 4 10 10 H 1.48499 * 109.46722 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47422 * 119.99552 * 9 7 5 12 12 H 1.48498 * 109.46498 * 239.99611 * 9 7 5 13 13 C 1.34778 * 119.99992 * 84.34291 * 4 3 2 14 14 O 1.21287 * 119.99778 * 179.72899 * 13 4 3 15 15 C 1.50699 * 120.00060 * 359.72253 * 13 4 3 16 16 H 1.09010 * 110.33236 * 320.80078 * 15 13 4 17 17 C 1.54898 * 110.37286 * 83.17091 * 15 13 4 18 18 C 1.55140 * 101.65178 * 155.90190 * 17 15 13 19 19 H 1.09010 * 110.70523 * 205.96595 * 18 17 15 20 20 F 1.39891 * 110.70747 * 82.73408 * 18 17 15 21 21 C 1.54319 * 103.02007 * 324.34533 * 18 17 15 22 22 N 1.47443 * 107.23007 * 22.28644 * 21 18 17 23 23 H 1.08999 * 109.47034 * 284.55259 * 3 2 1 24 24 H 1.08996 * 109.46663 * 164.55699 * 3 2 1 25 25 H 0.97002 * 119.99989 * 180.02562 * 8 7 5 26 26 H 1.08999 * 110.99463 * 273.99128 * 17 15 13 27 27 H 1.09001 * 110.99050 * 37.81423 * 17 15 13 28 28 H 1.08998 * 109.89036 * 262.87786 * 21 18 17 29 29 H 1.08995 * 110.02029 * 141.76490 * 21 18 17 30 30 H 1.00896 * 111.00189 * 123.25800 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0969 -0.9833 -0.9690 5 6 3.4417 -2.2431 -0.5522 6 1 4.0620 -2.8679 -1.1776 7 6 2.9929 -2.7160 0.6748 8 7 1.9405 -2.1721 1.2437 9 14 3.8858 -4.1248 1.5160 10 1 5.0305 -4.5578 0.6749 11 1 4.3861 -3.6739 2.8395 12 1 2.9502 -5.2629 1.7020 13 6 3.2129 -0.6484 -2.2694 14 8 3.6222 -1.4615 -3.0708 15 6 2.8339 0.7363 -2.7275 16 1 1.9399 1.0768 -2.2049 17 6 4.0061 1.7214 -2.4937 18 6 3.7011 2.8255 -3.5400 19 1 4.6154 3.3414 -3.8337 20 9 2.7584 3.7315 -3.0426 21 6 3.1191 2.0287 -4.7266 22 7 2.6129 0.7524 -4.1893 23 1 2.9715 -0.2574 0.9947 24 1 2.9709 0.9914 -0.2736 25 1 1.6275 -2.5020 2.1005 26 1 3.9810 2.1251 -1.4815 27 1 4.9643 1.2437 -2.6982 28 1 3.8994 1.8376 -5.4632 29 1 2.3037 2.5868 -5.1867 30 1 1.6358 0.6298 -4.4087 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707462552.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:37 Heat of formation + Delta-G solvation = -58.121238 kcal Electronic energy + Delta-G solvation = -17627.882325 eV Core-core repulsion = 14565.421431 eV Total energy + Delta-G solvation = -3062.460895 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.097 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.63464 -40.90624 -38.35221 -37.44720 -36.13232 -33.76431 -31.03420 -30.30952 -29.09906 -26.74596 -23.62186 -22.15353 -20.57647 -19.75303 -18.63894 -18.10514 -17.67514 -17.17009 -16.37645 -16.03623 -15.91959 -15.75290 -14.97438 -14.77181 -14.55521 -14.07357 -13.84864 -13.70374 -13.45087 -13.14677 -12.95126 -12.85937 -12.63929 -12.33829 -12.20957 -12.05097 -11.94898 -11.81481 -11.11982 -10.42973 -9.90625 -9.39556 -8.39050 -5.95355 1.38676 1.48947 1.61366 1.77306 2.03052 2.20390 2.34651 2.82983 2.98339 3.24160 3.40128 3.50423 3.54114 3.79867 3.96369 4.08443 4.15227 4.38961 4.45449 4.67524 4.81838 4.85694 4.92489 5.19692 5.49846 5.67282 6.07740 6.25849 6.44345 6.94894 7.14803 7.36848 7.96931 8.64949 Molecular weight = 241.10amu Principal moments of inertia in cm(-1) A = 0.032843 B = 0.007778 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.332023 B = 3598.893775 C = 4004.637395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.255 3.745 3 C 0.223 3.777 4 N -0.458 5.458 5 C -0.338 4.338 6 H 0.083 0.917 7 C 0.003 3.997 8 N -0.896 5.896 9 Si 0.987 3.013 10 H -0.271 1.271 11 H -0.262 1.262 12 H -0.290 1.290 13 C 0.462 3.538 14 O -0.595 6.595 15 C 0.066 3.934 16 H 0.064 0.936 17 C -0.140 4.140 18 C 0.071 3.929 19 H 0.140 0.860 20 F -0.219 7.219 21 C 0.026 3.974 22 N -0.678 5.678 23 H 0.127 0.873 24 H 0.129 0.871 25 H 0.274 0.726 26 H 0.113 0.887 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 11.695 -3.515 13.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.063 4.063 3 C 0.096 3.904 4 N -0.179 5.179 5 C -0.465 4.465 6 H 0.100 0.900 7 C -0.198 4.198 8 N -0.535 5.535 9 Si 0.811 3.189 10 H -0.195 1.195 11 H -0.187 1.187 12 H -0.217 1.217 13 C 0.251 3.749 14 O -0.478 6.478 15 C -0.047 4.047 16 H 0.081 0.919 17 C -0.178 4.178 18 C 0.034 3.966 19 H 0.157 0.843 20 F -0.200 7.200 21 C -0.103 4.103 22 N -0.309 5.309 23 H 0.144 0.856 24 H 0.146 0.854 25 H 0.084 0.916 26 H 0.131 0.869 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.091 10.889 -3.911 12.640 hybrid contribution -0.546 -0.613 0.883 1.206 sum 4.546 10.276 -3.027 11.637 Atomic orbital electron populations 1.80890 1.14722 1.12212 1.10882 1.29846 0.95931 0.89654 0.90830 1.19077 0.80059 0.93602 0.97633 1.43798 1.57172 1.11532 1.05397 1.19646 1.30493 0.92941 1.03457 0.89963 1.25897 0.95214 1.00993 0.97720 1.69943 1.20543 1.44418 1.18561 0.84968 0.78080 0.77345 0.78458 1.19495 1.18657 1.21688 1.20725 0.82474 0.90252 0.81486 1.90504 1.50318 1.53605 1.53330 1.22222 0.99369 0.92888 0.90227 0.91854 1.23376 0.98276 0.94396 1.01773 1.22974 0.91756 0.88394 0.93426 0.84253 1.92814 1.68414 1.69461 1.89291 1.23390 1.01897 0.87978 0.97011 1.61276 1.24368 1.35406 1.09808 0.85552 0.85403 0.91595 0.86906 0.88087 0.87580 0.90205 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.14 18.54 20.01 0.37 -23.77 16 2 C 0.26 11.20 12.63 89.44 1.13 12.33 16 3 C 0.22 8.57 4.80 84.58 0.41 8.98 16 4 N -0.46 -21.22 2.60 -645.43 -1.68 -22.89 16 5 C -0.34 -17.60 9.32 84.04 0.78 -16.82 16 6 H 0.08 4.64 7.38 -2.92 -0.02 4.62 16 7 C 0.00 0.17 4.87 84.93 0.41 0.58 16 8 N -0.90 -44.83 9.47 21.66 0.21 -44.62 16 9 Si 0.99 40.01 29.60 68.60 2.03 42.04 16 10 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 12 H -0.29 -12.08 7.11 99.48 0.71 -11.38 16 13 C 0.46 21.00 6.85 87.66 0.60 21.60 16 14 O -0.60 -32.33 16.24 -3.05 -0.05 -32.38 16 15 C 0.07 2.25 2.72 44.64 0.12 2.37 16 16 H 0.06 2.17 6.50 -2.38 -0.02 2.16 16 17 C -0.14 -3.43 5.94 31.98 0.19 -3.24 16 18 C 0.07 1.41 4.75 31.78 0.15 1.56 16 19 H 0.14 1.75 8.14 -2.38 -0.02 1.73 16 20 F -0.22 -5.15 17.19 44.97 0.77 -4.38 16 21 C 0.03 0.57 7.40 86.65 0.64 1.21 16 22 N -0.68 -21.52 6.64 -486.29 -3.23 -24.75 16 23 H 0.13 4.95 6.46 -2.39 -0.02 4.94 16 24 H 0.13 3.61 5.44 -2.39 -0.01 3.60 16 25 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 26 H 0.11 2.29 6.82 -2.39 -0.02 2.27 16 27 H 0.10 2.54 8.05 -2.39 -0.02 2.52 16 28 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.08 1.51 8.12 -2.39 -0.02 1.49 16 30 H 0.34 10.58 8.91 -89.70 -0.80 9.78 16 Total: -1.00 -68.75 263.16 3.25 -65.50 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.39 Total: 16.69 kcal Atomic # 6 Polarization: 24.13 SS G_CDS: 4.44 Total: 28.56 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -4.33 Total: -116.04 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.05 Total: -32.38 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.77 Total: -4.38 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -68.75 3.25 -65.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707462552.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.378 kcal (2) G-P(sol) polarization free energy of solvation -68.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds