Wall clock time and date at job start Mon Mar 30 2020 03:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46936 * 144.16865 * 3 2 1 5 5 C 1.37101 * 120.00013 * 264.38636 * 4 3 2 6 6 H 1.08005 * 120.00182 * 199.69723 * 5 4 3 7 7 C 1.38953 * 120.00004 * 19.69496 * 5 4 3 8 8 N 1.31414 * 119.99709 * 21.75972 * 7 5 4 9 9 Si 1.86803 * 120.00074 * 201.76588 * 7 5 4 10 10 H 1.48504 * 109.47005 * 89.99664 * 9 7 5 11 11 H 1.48493 * 109.46730 * 209.99923 * 9 7 5 12 12 H 1.48500 * 109.46831 * 329.99869 * 9 7 5 13 13 C 1.34779 * 120.00040 * 84.38683 * 4 3 2 14 14 O 1.21291 * 119.99765 * 179.97438 * 13 4 3 15 15 C 1.50691 * 119.99999 * 0.02562 * 13 4 3 16 16 H 1.09001 * 110.46443 * 42.41248 * 15 13 4 17 17 C 1.54380 * 110.41094 * 280.00140 * 15 13 4 18 18 C 1.54265 * 105.14871 * 217.42097 * 17 15 13 19 19 H 1.09001 * 110.32523 * 118.84461 * 18 17 15 20 20 F 1.39902 * 110.32345 * 241.05219 * 18 17 15 21 21 C 1.54380 * 105.05868 * 359.94822 * 18 17 15 22 22 N 1.48558 * 104.59595 * 23.85242 * 21 18 17 23 23 H 1.09007 * 109.47413 * 24.17054 * 3 2 1 24 24 H 1.09001 * 109.47447 * 264.16349 * 3 2 1 25 25 H 0.96999 * 119.99584 * 179.97438 * 8 7 5 26 26 H 1.08993 * 110.32370 * 98.47376 * 17 15 13 27 27 H 1.09001 * 110.32519 * 336.36216 * 17 15 13 28 28 H 1.09005 * 110.40828 * 142.63582 * 21 18 17 29 29 H 1.09000 * 110.40829 * 264.95519 * 21 18 17 30 30 H 1.00900 * 110.99634 * 80.07785 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0957 1.1207 -0.8086 5 6 3.4338 0.9217 -2.1223 6 1 4.0760 1.6279 -2.6276 7 6 2.9503 -0.1886 -2.8036 8 7 1.8700 -0.8027 -2.3761 9 14 3.8359 -0.8083 -4.3271 10 1 4.8612 -1.8071 -3.9317 11 1 2.8562 -1.4416 -5.2458 12 1 4.4944 0.3314 -5.0148 13 6 3.2121 2.3467 -0.2610 14 8 3.6164 3.2739 -0.9304 15 6 2.8411 2.5653 1.1830 16 1 3.2114 1.7464 1.7998 17 6 1.3105 2.7013 1.3310 18 6 1.1045 3.7756 2.4188 19 1 0.5609 4.6279 2.0110 20 9 0.4158 3.2360 3.5105 21 6 2.5283 4.1990 2.8391 22 7 3.3794 3.8639 1.6685 23 1 2.9718 -0.9368 -0.4208 24 1 2.9713 0.1053 1.0223 25 1 1.5322 -1.5775 -2.8520 26 1 0.8751 1.7536 1.6477 27 1 0.8664 3.0256 0.3899 28 1 2.5627 5.2698 3.0401 29 1 2.8482 3.6378 3.7170 30 1 3.3077 4.5732 0.9545 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707462553.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:39 Heat of formation + Delta-G solvation = -38.278000 kcal Electronic energy + Delta-G solvation = -17705.450436 eV Core-core repulsion = 14643.850008 eV Total energy + Delta-G solvation = -3061.600427 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.097 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.54182 -39.53446 -37.08478 -35.80338 -34.35776 -32.00257 -29.50685 -28.83270 -27.48361 -25.06964 -22.44083 -21.04718 -19.33266 -17.99984 -17.24988 -16.40832 -16.07912 -15.87197 -15.24407 -14.56671 -14.37885 -14.00258 -13.77569 -13.33497 -13.03690 -12.60178 -12.52824 -12.00691 -11.95986 -11.72971 -11.50828 -11.35159 -11.18092 -10.77315 -10.72246 -10.52561 -10.44800 -10.30822 -9.34091 -8.70175 -8.60601 -8.12595 -6.58368 -4.09113 3.04385 3.18492 3.22415 3.43150 3.62172 3.90458 4.03478 4.26720 4.45930 4.60571 4.66656 4.81039 4.93973 5.01545 5.15811 5.39259 5.51829 5.55514 5.62479 5.86317 6.01511 6.06575 6.21752 6.39293 6.69201 7.40104 7.46545 7.81583 8.18797 8.67496 8.90226 9.09810 9.61939 10.47606 Molecular weight = 241.10amu Principal moments of inertia in cm(-1) A = 0.035374 B = 0.008003 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.346880 B = 3497.670076 C = 4096.988295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.245 3.755 3 C 0.218 3.782 4 N -0.435 5.435 5 C -0.317 4.317 6 H 0.110 0.890 7 C 0.034 3.966 8 N -0.873 5.873 9 Si 0.929 3.071 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.459 3.541 14 O -0.567 6.567 15 C 0.056 3.944 16 H 0.105 0.895 17 C -0.171 4.171 18 C 0.056 3.944 19 H 0.088 0.912 20 F -0.209 7.209 21 C 0.018 3.982 22 N -0.641 5.641 23 H 0.126 0.874 24 H 0.086 0.914 25 H 0.274 0.726 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.916 2.791 8.242 8.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.074 4.074 3 C 0.090 3.910 4 N -0.155 5.155 5 C -0.444 4.444 6 H 0.127 0.873 7 C -0.171 4.171 8 N -0.511 5.511 9 Si 0.755 3.245 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.247 3.753 14 O -0.449 6.449 15 C -0.057 4.057 16 H 0.123 0.877 17 C -0.211 4.211 18 C 0.017 3.983 19 H 0.106 0.894 20 F -0.190 7.190 21 C -0.112 4.112 22 N -0.271 5.271 23 H 0.143 0.857 24 H 0.104 0.896 25 H 0.085 0.915 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.957 2.834 8.185 8.714 hybrid contribution -0.416 -0.380 -1.247 1.369 sum 0.541 2.453 6.937 7.378 Atomic orbital electron populations 1.80918 1.13419 1.08902 1.11468 1.29184 0.95306 0.92406 0.90468 1.18749 0.81862 0.95012 0.95361 1.43573 1.56158 1.04987 1.10802 1.19734 1.28566 1.09768 0.86305 0.87284 1.25322 0.94731 0.97551 0.99454 1.69843 1.17938 1.21491 1.41836 0.85877 0.78995 0.79167 0.80468 1.20022 1.21084 1.19261 1.19811 0.84251 0.83096 0.88130 1.90540 1.50275 1.40902 1.63191 1.22594 0.92130 0.94954 0.96057 0.87727 1.23478 0.97656 1.00460 0.99548 1.23117 0.94245 0.96427 0.84477 0.89391 1.92806 1.81596 1.87982 1.56646 1.23677 0.88870 1.02049 0.96646 1.63288 1.49667 1.04736 1.09447 0.85654 0.89622 0.91497 0.89064 0.89780 0.89621 0.88936 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.70 18.31 42.15 0.77 -9.92 16 2 C 0.24 5.20 10.78 -20.76 -0.22 4.97 16 3 C 0.22 4.18 4.91 -6.83 -0.03 4.15 16 4 N -0.44 -9.82 2.60 -117.93 -0.31 -10.13 16 5 C -0.32 -7.94 9.28 -14.93 -0.14 -8.08 16 6 H 0.11 2.90 7.42 -52.48 -0.39 2.51 16 7 C 0.03 0.82 4.84 -17.47 -0.08 0.73 16 8 N -0.87 -21.54 9.56 55.50 0.53 -21.01 16 9 Si 0.93 19.21 29.61 -169.99 -5.03 14.18 16 10 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 11 H -0.29 -6.00 7.11 56.52 0.40 -5.59 16 12 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 13 C 0.46 10.04 6.76 -10.99 -0.07 9.96 16 14 O -0.57 -14.22 15.53 5.55 0.09 -14.13 16 15 C 0.06 0.96 2.83 -67.14 -0.19 0.77 16 16 H 0.10 1.61 6.54 -51.93 -0.34 1.27 16 17 C -0.17 -2.85 5.19 -25.35 -0.13 -2.98 16 18 C 0.06 0.77 4.85 -25.35 -0.12 0.65 16 19 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 20 F -0.21 -3.17 17.10 2.25 0.04 -3.14 16 21 C 0.02 0.23 7.26 -2.18 -0.02 0.22 16 22 N -0.64 -10.03 7.34 -103.84 -0.76 -10.79 16 23 H 0.13 2.45 6.63 -51.93 -0.34 2.10 16 24 H 0.09 1.27 6.26 -51.93 -0.32 0.94 16 25 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 26 H 0.09 1.58 6.26 -51.93 -0.33 1.26 16 27 H 0.08 1.58 7.85 -51.93 -0.41 1.17 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.10 8.12 -51.93 -0.42 0.68 16 30 H 0.35 5.83 7.80 -39.29 -0.31 5.53 16 LS Contribution 259.53 15.07 3.91 3.91 Total: -1.00 -29.13 259.53 -4.62 -33.74 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -2.84 Total: 6.89 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -1.02 Total: 10.39 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.23 Total: -51.85 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.09 Total: -14.13 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.14 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.13 -4.62 -33.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707462553.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.535 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds