Wall clock time and date at job start Mon Mar 30 2020 03:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46936 * 144.16865 * 3 2 1 5 5 C 1.37101 * 120.00013 * 264.38636 * 4 3 2 6 6 H 1.08005 * 120.00182 * 199.69723 * 5 4 3 7 7 C 1.38953 * 120.00004 * 19.69496 * 5 4 3 8 8 N 1.31414 * 119.99709 * 21.75972 * 7 5 4 9 9 Si 1.86803 * 120.00074 * 201.76588 * 7 5 4 10 10 H 1.48504 * 109.47005 * 89.99664 * 9 7 5 11 11 H 1.48493 * 109.46730 * 209.99923 * 9 7 5 12 12 H 1.48500 * 109.46831 * 329.99869 * 9 7 5 13 13 C 1.34779 * 120.00040 * 84.38683 * 4 3 2 14 14 O 1.21291 * 119.99765 * 179.97438 * 13 4 3 15 15 C 1.50691 * 119.99999 * 0.02562 * 13 4 3 16 16 H 1.09001 * 110.46443 * 42.41248 * 15 13 4 17 17 C 1.54380 * 110.41094 * 280.00140 * 15 13 4 18 18 C 1.54265 * 105.14871 * 217.42097 * 17 15 13 19 19 H 1.09001 * 110.32523 * 118.84461 * 18 17 15 20 20 F 1.39902 * 110.32345 * 241.05219 * 18 17 15 21 21 C 1.54380 * 105.05868 * 359.94822 * 18 17 15 22 22 N 1.48558 * 104.59595 * 23.85242 * 21 18 17 23 23 H 1.09007 * 109.47413 * 24.17054 * 3 2 1 24 24 H 1.09001 * 109.47447 * 264.16349 * 3 2 1 25 25 H 0.96999 * 119.99584 * 179.97438 * 8 7 5 26 26 H 1.08993 * 110.32370 * 98.47376 * 17 15 13 27 27 H 1.09001 * 110.32519 * 336.36216 * 17 15 13 28 28 H 1.09005 * 110.40828 * 142.63582 * 21 18 17 29 29 H 1.09000 * 110.40829 * 264.95519 * 21 18 17 30 30 H 1.00900 * 110.99634 * 80.07785 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0957 1.1207 -0.8086 5 6 3.4338 0.9217 -2.1223 6 1 4.0760 1.6279 -2.6276 7 6 2.9503 -0.1886 -2.8036 8 7 1.8700 -0.8027 -2.3761 9 14 3.8359 -0.8083 -4.3271 10 1 4.8612 -1.8071 -3.9317 11 1 2.8562 -1.4416 -5.2458 12 1 4.4944 0.3314 -5.0148 13 6 3.2121 2.3467 -0.2610 14 8 3.6164 3.2739 -0.9304 15 6 2.8411 2.5653 1.1830 16 1 3.2114 1.7464 1.7998 17 6 1.3105 2.7013 1.3310 18 6 1.1045 3.7756 2.4188 19 1 0.5609 4.6279 2.0110 20 9 0.4158 3.2360 3.5105 21 6 2.5283 4.1990 2.8391 22 7 3.3794 3.8639 1.6685 23 1 2.9718 -0.9368 -0.4208 24 1 2.9713 0.1053 1.0223 25 1 1.5322 -1.5775 -2.8520 26 1 0.8751 1.7536 1.6477 27 1 0.8664 3.0256 0.3899 28 1 2.5627 5.2698 3.0401 29 1 2.8482 3.6378 3.7170 30 1 3.3077 4.5732 0.9545 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707462553.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:38 Heat of formation + Delta-G solvation = -59.139711 kcal Electronic energy + Delta-G solvation = -17706.355067 eV Core-core repulsion = 14643.850008 eV Total energy + Delta-G solvation = -3062.505059 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.097 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.69497 -41.12317 -38.49175 -37.54387 -36.13887 -33.83002 -30.81296 -30.12168 -29.12568 -26.78858 -23.84152 -22.23359 -20.89158 -19.77746 -18.71676 -18.06235 -17.44446 -17.20727 -16.61416 -16.14203 -15.82862 -15.56021 -15.21205 -14.88863 -14.55227 -14.13036 -13.93860 -13.64612 -13.43252 -13.30721 -13.00535 -12.92937 -12.75110 -12.35571 -12.18266 -12.11478 -11.92188 -11.72186 -11.14383 -10.44544 -9.95948 -9.83293 -8.43882 -6.01029 1.37674 1.48297 1.58100 1.75681 1.96958 2.23475 2.33505 2.85334 2.97707 3.11973 3.35388 3.48951 3.53910 3.70447 3.78502 4.06000 4.16189 4.33123 4.46645 4.59099 4.72421 4.78884 4.84758 5.03611 5.46157 5.48611 6.00526 6.20566 6.34960 6.98982 7.07192 7.29515 7.84612 8.59781 Molecular weight = 241.10amu Principal moments of inertia in cm(-1) A = 0.035374 B = 0.008003 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.346880 B = 3497.670076 C = 4096.988295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.257 3.743 3 C 0.217 3.783 4 N -0.447 5.447 5 C -0.343 4.343 6 H 0.084 0.916 7 C 0.008 3.992 8 N -0.889 5.889 9 Si 0.987 3.013 10 H -0.258 1.258 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.454 3.546 14 O -0.607 6.607 15 C 0.066 3.934 16 H 0.130 0.870 17 C -0.168 4.168 18 C 0.061 3.939 19 H 0.105 0.895 20 F -0.214 7.214 21 C 0.026 3.974 22 N -0.646 5.646 23 H 0.124 0.876 24 H 0.136 0.864 25 H 0.275 0.725 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.427 2.682 9.614 10.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.061 4.061 3 C 0.091 3.909 4 N -0.167 5.167 5 C -0.470 4.470 6 H 0.102 0.898 7 C -0.195 4.195 8 N -0.527 5.527 9 Si 0.812 3.188 10 H -0.183 1.183 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.243 3.757 14 O -0.492 6.492 15 C -0.048 4.048 16 H 0.148 0.852 17 C -0.208 4.208 18 C 0.022 3.978 19 H 0.123 0.877 20 F -0.195 7.195 21 C -0.104 4.104 22 N -0.276 5.276 23 H 0.142 0.858 24 H 0.153 0.847 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.074 0.926 28 H 0.134 0.866 29 H 0.124 0.876 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.462 2.706 9.590 10.071 hybrid contribution -0.594 -0.299 -1.678 1.805 sum 0.868 2.406 7.911 8.315 Atomic orbital electron populations 1.80915 1.14489 1.09992 1.12659 1.29572 0.95695 0.91386 0.89427 1.19068 0.80532 0.93870 0.97472 1.43726 1.56214 1.06228 1.10482 1.19626 1.29329 1.10171 0.87913 0.89830 1.25923 0.94889 0.97062 1.01630 1.69922 1.18442 1.21566 1.42773 0.85011 0.78068 0.78434 0.77322 1.18309 1.21313 1.20157 1.20639 0.82744 0.82324 0.89955 1.90506 1.51739 1.42115 1.64807 1.22542 0.92483 0.96794 0.92936 0.85238 1.23386 0.96957 1.01144 0.99316 1.23142 0.95491 0.95666 0.83457 0.87730 1.92801 1.81822 1.88123 1.56750 1.23788 0.86941 1.04208 0.95474 1.63332 1.50418 1.03834 1.09984 0.85834 0.84665 0.91497 0.89729 0.92618 0.86631 0.87634 0.83386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.77 18.31 20.00 0.37 -22.40 16 2 C 0.26 10.74 10.78 89.44 0.96 11.70 16 3 C 0.22 8.06 4.91 84.57 0.42 8.47 16 4 N -0.45 -20.11 2.60 -645.42 -1.67 -21.79 16 5 C -0.34 -17.43 9.28 84.04 0.78 -16.65 16 6 H 0.08 4.60 7.42 -2.91 -0.02 4.58 16 7 C 0.01 0.37 4.84 84.93 0.41 0.79 16 8 N -0.89 -43.61 9.56 21.66 0.21 -43.40 16 9 Si 0.99 39.27 29.61 68.60 2.03 41.30 16 10 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 11 H -0.29 -11.48 7.11 99.48 0.71 -10.77 16 12 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 13 C 0.45 19.77 6.76 87.65 0.59 20.36 16 14 O -0.61 -30.99 15.53 -3.07 -0.05 -31.04 16 15 C 0.07 2.14 2.83 44.28 0.13 2.26 16 16 H 0.13 3.56 6.54 -2.39 -0.02 3.54 16 17 C -0.17 -5.37 5.19 31.49 0.16 -5.21 16 18 C 0.06 1.53 4.85 31.49 0.15 1.68 16 19 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 20 F -0.21 -5.91 17.10 44.97 0.77 -5.14 16 21 C 0.03 0.56 7.26 86.45 0.63 1.19 16 22 N -0.65 -18.78 7.34 -482.43 -3.54 -22.32 16 23 H 0.12 4.68 6.63 -2.38 -0.02 4.67 16 24 H 0.14 3.60 6.26 -2.39 -0.01 3.59 16 25 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 26 H 0.08 2.82 6.26 -2.39 -0.01 2.80 16 27 H 0.05 2.09 7.85 -2.39 -0.02 2.07 16 28 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.11 2.07 8.12 -2.39 -0.02 2.05 16 30 H 0.35 11.02 7.80 -89.69 -0.70 10.32 16 Total: -1.00 -63.20 259.53 2.83 -60.37 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.49 Total: 19.82 kcal Atomic # 6 Polarization: 20.37 SS G_CDS: 4.23 Total: 24.60 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -4.64 Total: -109.91 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.05 Total: -31.04 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.77 Total: -5.14 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -63.20 2.83 -60.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707462553.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.231 kcal (2) G-P(sol) polarization free energy of solvation -63.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds