Wall clock time and date at job start Mon Mar 30 2020 03:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99803 * 2 1 4 4 H 1.48502 * 109.46994 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.46730 * 119.99802 * 3 2 1 6 6 H 1.48494 * 109.47060 * 239.99883 * 3 2 1 7 7 C 1.37876 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00326 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47058 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47113 * 179.97438 * 10 9 7 12 12 C 1.33358 * 117.94321 * 84.74914 * 11 10 9 13 13 O 1.21279 * 118.25139 * 357.80340 * 12 11 10 14 14 C 1.50177 * 123.50755 * 177.77184 * 12 11 10 15 15 C 1.53072 * 109.88861 * 17.59308 * 14 12 11 16 16 C 1.53350 * 108.42584 * 311.09143 * 15 14 12 17 17 C 1.45755 * 117.94969 * 264.49385 * 11 10 9 18 18 H 1.08995 * 109.29982 * 78.76139 * 17 11 10 19 19 C 1.50697 * 109.29702 * 319.38239 * 17 11 10 20 20 O 1.20828 * 120.00310 * 328.44051 * 19 17 11 21 21 O 1.34230 * 119.99819 * 148.43775 * 19 17 11 22 22 H 0.96999 * 119.99527 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47437 * 300.00153 * 9 7 2 24 24 H 1.08997 * 109.46982 * 59.99878 * 9 7 2 25 25 H 1.08999 * 109.47336 * 299.99946 * 10 9 7 26 26 H 1.08997 * 109.47293 * 60.00105 * 10 9 7 27 27 H 1.09006 * 109.39925 * 137.71505 * 14 12 11 28 28 H 1.09000 * 109.40921 * 257.54649 * 14 12 11 29 29 H 1.09002 * 109.67763 * 70.82918 * 15 14 12 30 30 H 1.09005 * 109.67453 * 191.36106 * 15 14 12 31 31 H 1.08997 * 109.60308 * 187.28878 * 16 15 14 32 32 H 1.08998 * 109.60244 * 307.61604 * 16 15 14 33 33 H 0.96700 * 117.00112 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 1.2126 6 1 3.1029 1.6964 -1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 0.0012 12 6 1.1068 -5.4184 -1.1717 13 8 1.3283 -4.7684 -2.1714 14 6 0.3903 -6.7297 -1.3210 15 6 -0.1721 -7.1728 0.0320 16 6 0.9413 -7.0596 1.0803 17 6 1.2789 -5.5838 1.2830 18 1 0.4477 -5.0941 1.7903 19 6 2.5161 -5.4659 2.1353 20 8 3.6071 -5.4427 1.6166 21 8 2.4061 -5.3867 3.4707 22 1 -0.4849 -0.8401 -0.0004 23 1 0.6241 -2.5567 0.8903 24 1 0.6249 -2.5570 -0.8897 25 1 2.8721 -3.6043 -0.8894 26 1 2.8721 -3.6043 0.8905 27 1 -0.4271 -6.6167 -2.0333 28 1 1.0873 -7.4838 -1.6864 29 1 -1.0061 -6.5290 0.3114 30 1 -0.5117 -8.2066 -0.0325 31 1 0.6022 -7.4910 2.0220 32 1 1.8268 -7.5915 0.7322 33 1 3.2276 -5.3120 3.9753 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709652817.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:06 Heat of formation + Delta-G solvation = -136.576557 kcal Electronic energy + Delta-G solvation = -17993.007036 eV Core-core repulsion = 15018.311617 eV Total energy + Delta-G solvation = -2974.695419 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.05439 -39.48546 -36.48172 -35.97548 -34.70427 -32.94103 -30.37511 -29.13011 -25.85570 -24.48824 -22.57041 -21.88110 -21.24427 -18.47472 -18.04581 -17.06594 -16.87794 -16.33589 -16.00017 -15.41310 -14.84255 -14.01065 -13.77392 -13.70464 -13.61305 -13.34594 -12.83204 -12.30807 -12.10063 -11.90127 -11.54363 -11.45218 -11.23408 -11.10960 -10.77608 -10.60128 -10.29168 -10.03266 -9.91999 -9.40104 -8.62294 -8.28470 -8.23742 -6.33557 -4.01796 2.06226 2.66345 3.06459 3.37588 3.46977 3.50271 3.68140 4.41856 4.50142 4.58770 4.64595 4.68498 5.07606 5.21722 5.32172 5.44939 5.48913 5.55583 5.62656 5.71829 5.95211 6.05506 6.39898 6.48064 6.59950 6.76757 7.36805 7.52244 7.80646 7.82557 8.21434 8.47626 8.53511 8.90648 9.70314 11.07534 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.025079 B = 0.007489 C = 0.006417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.196536 B = 3738.101696 C = 4362.270263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.016 3.984 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.600 4.600 8 H 0.049 0.951 9 C 0.001 3.999 10 C 0.116 3.884 11 N -0.588 5.588 12 C 0.515 3.485 13 O -0.536 6.536 14 C -0.136 4.136 15 C -0.119 4.119 16 C -0.126 4.126 17 C 0.158 3.842 18 H 0.108 0.892 19 C 0.474 3.526 20 O -0.497 6.497 21 O -0.512 6.512 22 H 0.268 0.732 23 H 0.004 0.996 24 H 0.018 0.982 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 -16.860 6.027 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.639 4.639 8 H 0.067 0.933 9 C -0.036 4.036 10 C -0.004 4.004 11 N -0.322 5.322 12 C 0.303 3.697 13 O -0.413 6.413 14 C -0.176 4.176 15 C -0.157 4.157 16 C -0.164 4.164 17 C 0.051 3.949 18 H 0.126 0.874 19 C 0.314 3.686 20 O -0.384 6.384 21 O -0.324 6.324 22 H 0.078 0.922 23 H 0.022 0.978 24 H 0.036 0.964 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 0.157 -14.912 5.117 15.766 hybrid contribution 0.869 -1.603 0.493 1.889 sum 1.026 -16.514 5.610 17.471 Atomic orbital electron populations 1.70777 1.06851 1.30530 1.46569 1.25857 0.96548 1.02674 0.93682 0.83529 0.74868 0.75208 0.76546 1.20715 1.21464 1.21356 1.21911 0.94281 0.91704 1.55975 0.93265 1.19495 0.95020 0.92767 0.96354 1.21917 0.95219 0.80901 1.02408 1.47389 1.56962 1.23730 1.04166 1.20014 0.79671 0.87510 0.82553 1.90764 1.56079 1.59046 1.35402 1.21710 1.01505 0.95145 0.99214 1.21642 0.97778 1.02850 0.93424 1.21847 1.00583 0.92286 1.01641 1.20369 0.93451 0.96291 0.84757 0.87419 1.23622 0.91628 0.72054 0.81308 1.90756 1.29314 1.44468 1.73821 1.84515 1.42765 1.85000 1.20100 0.92180 0.97808 0.96419 0.90529 0.91473 0.88013 0.88435 0.90369 0.89866 0.88745 0.90257 0.72964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.91 13.65 55.43 0.76 -28.16 16 2 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 3 Si 1.07 26.30 29.90 -169.99 -5.08 21.22 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.60 -18.07 9.11 -34.44 -0.31 -18.38 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.00 0.04 4.51 -27.88 -0.13 -0.09 16 10 C 0.12 2.71 4.46 -4.04 -0.02 2.70 16 11 N -0.59 -11.03 2.57 -168.77 -0.43 -11.46 16 12 C 0.51 9.58 7.40 -11.87 -0.09 9.49 16 13 O -0.54 -12.67 16.02 5.56 0.09 -12.58 16 14 C -0.14 -1.65 6.03 -28.10 -0.17 -1.81 16 15 C -0.12 -1.07 6.04 -26.51 -0.16 -1.23 16 16 C -0.13 -1.21 5.28 -26.68 -0.14 -1.35 16 17 C 0.16 2.23 3.23 -69.62 -0.22 2.00 16 18 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 19 C 0.47 6.94 6.22 36.00 0.22 7.17 16 20 O -0.50 -8.90 15.76 -18.75 -0.30 -9.19 16 21 O -0.51 -5.78 13.42 -39.26 -0.53 -6.31 16 22 H 0.27 8.51 7.22 -40.82 -0.29 8.22 16 23 H 0.00 0.10 8.01 -51.93 -0.42 -0.31 16 24 H 0.02 0.53 7.74 -51.93 -0.40 0.13 16 25 H 0.08 1.95 7.39 -51.93 -0.38 1.57 16 26 H 0.07 1.54 5.49 -51.93 -0.29 1.25 16 27 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 33 H 0.41 2.91 9.10 45.56 0.41 3.32 16 LS Contribution 280.02 15.07 4.22 4.22 Total: -1.00 -38.04 280.02 -5.91 -43.96 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -3.52 Total: -0.58 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.11 Total: -1.12 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.32 Total: -39.62 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.73 Total: -28.08 kcal Atomic # 14 Polarization: 26.30 SS G_CDS: -5.08 Total: 21.22 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -38.04 -5.91 -43.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709652817.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.621 kcal (2) G-P(sol) polarization free energy of solvation -38.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds