Wall clock time and date at job start Mon Mar 30 2020 03:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99803 * 2 1 4 4 H 1.48502 * 109.46994 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.46730 * 119.99802 * 3 2 1 6 6 H 1.48494 * 109.47060 * 239.99883 * 3 2 1 7 7 C 1.37876 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00326 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47058 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47113 * 179.97438 * 10 9 7 12 12 C 1.33358 * 117.94321 * 84.74914 * 11 10 9 13 13 O 1.21279 * 118.25139 * 357.80340 * 12 11 10 14 14 C 1.50177 * 123.50755 * 177.77184 * 12 11 10 15 15 C 1.53072 * 109.88861 * 17.59308 * 14 12 11 16 16 C 1.53350 * 108.42584 * 311.09143 * 15 14 12 17 17 C 1.45755 * 117.94969 * 264.49385 * 11 10 9 18 18 H 1.08995 * 109.29982 * 78.76139 * 17 11 10 19 19 C 1.50697 * 109.29702 * 319.38239 * 17 11 10 20 20 O 1.20828 * 120.00310 * 328.44051 * 19 17 11 21 21 O 1.34230 * 119.99819 * 148.43775 * 19 17 11 22 22 H 0.96999 * 119.99527 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47437 * 300.00153 * 9 7 2 24 24 H 1.08997 * 109.46982 * 59.99878 * 9 7 2 25 25 H 1.08999 * 109.47336 * 299.99946 * 10 9 7 26 26 H 1.08997 * 109.47293 * 60.00105 * 10 9 7 27 27 H 1.09006 * 109.39925 * 137.71505 * 14 12 11 28 28 H 1.09000 * 109.40921 * 257.54649 * 14 12 11 29 29 H 1.09002 * 109.67763 * 70.82918 * 15 14 12 30 30 H 1.09005 * 109.67453 * 191.36106 * 15 14 12 31 31 H 1.08997 * 109.60308 * 187.28878 * 16 15 14 32 32 H 1.08998 * 109.60244 * 307.61604 * 16 15 14 33 33 H 0.96700 * 117.00112 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 1.2126 6 1 3.1029 1.6964 -1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 0.0012 12 6 1.1068 -5.4184 -1.1717 13 8 1.3283 -4.7684 -2.1714 14 6 0.3903 -6.7297 -1.3210 15 6 -0.1721 -7.1728 0.0320 16 6 0.9413 -7.0596 1.0803 17 6 1.2789 -5.5838 1.2830 18 1 0.4477 -5.0941 1.7903 19 6 2.5161 -5.4659 2.1353 20 8 3.6071 -5.4427 1.6166 21 8 2.4061 -5.3867 3.4707 22 1 -0.4849 -0.8401 -0.0004 23 1 0.6241 -2.5567 0.8903 24 1 0.6249 -2.5570 -0.8897 25 1 2.8721 -3.6043 -0.8894 26 1 2.8721 -3.6043 0.8905 27 1 -0.4271 -6.6167 -2.0333 28 1 1.0873 -7.4838 -1.6864 29 1 -1.0061 -6.5290 0.3114 30 1 -0.5117 -8.2066 -0.0325 31 1 0.6022 -7.4910 2.0220 32 1 1.8268 -7.5915 0.7322 33 1 3.2276 -5.3120 3.9753 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709652817.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:06 Heat of formation + Delta-G solvation = -165.365914 kcal Electronic energy + Delta-G solvation = -17994.255436 eV Core-core repulsion = 15018.311617 eV Total energy + Delta-G solvation = -2975.943819 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.32210 -40.78912 -37.75851 -37.12242 -36.47275 -34.80188 -31.72248 -30.91697 -27.07320 -26.37129 -24.21449 -23.11104 -22.74312 -19.69128 -19.26521 -19.01911 -18.29032 -17.74230 -17.40013 -16.60531 -16.13588 -15.69907 -15.36303 -14.98667 -14.91053 -14.82682 -14.43391 -14.12121 -13.71506 -13.09968 -12.91677 -12.73471 -12.65451 -12.41136 -12.16545 -11.96771 -11.93729 -11.85054 -11.71635 -11.04576 -10.68616 -10.61502 -9.91101 -8.78925 -6.49294 0.90213 1.43333 1.47634 1.57458 1.73146 1.77657 2.08772 2.52279 3.07674 3.40260 3.51438 3.79812 3.83325 4.06992 4.09239 4.24000 4.41128 4.51097 4.62569 4.71533 4.79351 4.84365 4.89303 5.05823 5.19154 5.24670 5.31149 5.45552 5.87320 6.05908 6.32831 6.45548 6.82382 7.06342 7.33060 8.62004 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.025079 B = 0.007489 C = 0.006417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.196536 B = 3738.101696 C = 4362.270263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.035 4.035 3 Si 1.121 2.879 4 H -0.277 1.277 5 H -0.263 1.263 6 H -0.274 1.274 7 C -0.625 4.625 8 H 0.048 0.952 9 C 0.014 3.986 10 C 0.135 3.865 11 N -0.592 5.592 12 C 0.501 3.499 13 O -0.601 6.601 14 C -0.126 4.126 15 C -0.111 4.111 16 C -0.117 4.117 17 C 0.144 3.856 18 H 0.116 0.884 19 C 0.478 3.522 20 O -0.537 6.537 21 O -0.499 6.499 22 H 0.253 0.747 23 H -0.002 1.002 24 H -0.020 1.020 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.081 0.919 33 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.101 -18.452 7.557 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.233 4.233 3 Si 0.940 3.060 4 H -0.202 1.202 5 H -0.187 1.187 6 H -0.199 1.199 7 C -0.663 4.663 8 H 0.066 0.934 9 C -0.024 4.024 10 C 0.012 3.988 11 N -0.324 5.324 12 C 0.292 3.708 13 O -0.483 6.483 14 C -0.166 4.166 15 C -0.148 4.148 16 C -0.154 4.154 17 C 0.039 3.961 18 H 0.134 0.866 19 C 0.320 3.680 20 O -0.427 6.427 21 O -0.312 6.312 22 H 0.063 0.937 23 H 0.016 0.984 24 H -0.001 1.001 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.128 0.872 28 H 0.139 0.861 29 H 0.095 0.905 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.100 0.900 33 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -0.050 -16.569 6.716 17.879 hybrid contribution 0.912 -1.140 0.074 1.462 sum 0.862 -17.709 6.790 18.986 Atomic orbital electron populations 1.70917 1.07808 1.29689 1.48171 1.27564 0.96624 1.06873 0.92215 0.82918 0.74178 0.70747 0.78127 1.20172 1.18734 1.19907 1.22336 0.94572 0.93244 1.56142 0.93388 1.19300 0.95026 0.94039 0.94057 1.21312 0.94131 0.82361 1.00982 1.47403 1.56147 1.22302 1.06554 1.21419 0.78800 0.89215 0.81357 1.90725 1.58591 1.61380 1.37558 1.21795 1.01513 0.91322 1.01932 1.21707 0.97111 1.05317 0.90690 1.21970 1.01044 0.88490 1.03932 1.20863 0.93414 0.99359 0.82436 0.86631 1.23688 0.91077 0.71031 0.82206 1.90749 1.30659 1.46557 1.74728 1.84467 1.44146 1.84070 1.18559 0.93723 0.98387 1.00139 0.93680 0.91002 0.87219 0.86084 0.90462 0.85373 0.84799 0.90034 0.70646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.23 13.65 21.45 0.29 -59.94 16 2 C -0.04 -2.15 5.46 84.65 0.46 -1.69 16 3 Si 1.12 52.69 29.90 68.60 2.05 54.74 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.62 -38.75 9.11 25.60 0.23 -38.52 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.01 0.79 4.51 29.85 0.13 0.93 16 10 C 0.14 6.60 4.46 86.38 0.39 6.99 16 11 N -0.59 -22.53 2.57 -807.04 -2.07 -24.61 16 12 C 0.50 19.00 7.40 87.71 0.65 19.64 16 13 O -0.60 -30.01 16.02 -3.03 -0.05 -30.06 16 14 C -0.13 -2.79 6.03 29.71 0.18 -2.61 16 15 C -0.11 -1.53 6.04 30.74 0.19 -1.34 16 16 C -0.12 -1.80 5.28 30.63 0.16 -1.64 16 17 C 0.14 3.85 3.23 44.30 0.14 4.00 16 18 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 19 C 0.48 13.36 6.22 71.23 0.44 13.81 16 20 O -0.54 -19.06 15.76 21.96 0.35 -18.71 16 21 O -0.50 -10.08 13.42 -51.42 -0.69 -10.77 16 22 H 0.25 16.74 7.22 -92.71 -0.67 16.07 16 23 H 0.00 -0.12 8.01 -2.38 -0.02 -0.14 16 24 H -0.02 -1.27 7.74 -2.39 -0.02 -1.29 16 25 H 0.04 2.45 7.39 -2.39 -0.02 2.43 16 26 H 0.07 3.41 5.49 -2.39 -0.01 3.39 16 27 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 28 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.08 1.14 8.13 -2.39 -0.02 1.12 16 30 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.29 8.10 -2.39 -0.02 1.27 16 33 H 0.43 5.06 9.10 -74.06 -0.67 4.39 16 Total: -1.00 -87.95 280.02 3.40 -84.55 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 0.55 Total: 5.25 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 2.98 Total: -0.44 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -1.78 Total: -84.55 kcal Atomic # 8 Polarization: -59.15 SS G_CDS: -0.39 Total: -59.54 kcal Atomic # 14 Polarization: 52.69 SS G_CDS: 2.05 Total: 54.74 kcal Total: -87.95 3.40 -84.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709652817.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.820 kcal (2) G-P(sol) polarization free energy of solvation -87.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds