Wall clock time and date at job start Mon Mar 30 2020 03:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47194 * 120.00507 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00070 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 O 1.42897 * 109.46862 * 180.02562 * 12 10 9 14 14 C 1.42902 * 113.99770 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.48441 * 330.00036 * 14 13 12 16 16 C 1.52954 * 109.48600 * 209.97023 * 14 13 12 17 17 C 1.52952 * 109.82032 * 176.42255 * 16 14 13 18 18 C 1.53229 * 109.40708 * 63.60145 * 17 16 14 19 19 C 1.51276 * 108.53221 * 305.37253 * 18 17 16 20 20 O 1.20757 * 120.84524 * 231.35949 * 19 18 17 21 21 C 1.51274 * 118.31082 * 51.33894 * 19 18 17 22 22 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 23 23 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 24 24 H 1.09002 * 109.46986 * 300.00334 * 12 10 9 25 25 H 1.09000 * 109.46827 * 60.00337 * 12 10 9 26 26 H 1.09001 * 109.41489 * 296.53241 * 16 14 13 27 27 H 1.08999 * 109.41320 * 56.38550 * 16 14 13 28 28 H 1.09008 * 109.48362 * 183.57928 * 17 16 14 29 29 H 1.08999 * 109.48651 * 303.60577 * 17 16 14 30 30 H 1.08998 * 109.62795 * 65.08321 * 18 17 16 31 31 H 1.08994 * 109.62984 * 185.46845 * 18 17 16 32 32 H 1.08995 * 109.63619 * 188.95555 * 21 19 18 33 33 H 1.09001 * 109.61327 * 68.38108 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1020 1.6964 1.2124 6 1 3.1018 1.6964 -1.2125 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 8 2.1725 -5.9490 0.0027 14 6 1.5579 -7.2392 0.0027 15 1 0.5980 -7.1846 0.5161 16 6 2.4660 -8.2369 0.7234 17 6 1.7766 -9.5997 0.8061 18 6 1.5665 -10.1506 -0.6082 19 6 0.8133 -9.1192 -1.4190 20 8 -0.1826 -9.4202 -2.0320 21 6 1.3392 -7.7010 -1.4419 22 1 -0.4850 0.8401 0.0004 23 1 0.3534 -2.3906 0.0024 24 1 0.6175 -4.9205 0.8924 25 1 0.6169 -4.9209 -0.8876 26 1 3.4022 -8.3371 0.1742 27 1 2.6739 -7.8755 1.7306 28 1 2.4004 -10.2887 1.3757 29 1 0.8115 -9.4896 1.3007 30 1 2.5331 -10.3465 -1.0722 31 1 0.9899 -11.0743 -0.5594 32 1 0.6139 -7.0492 -1.9288 33 1 2.2848 -7.6701 -1.9833 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712745816.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:19 Heat of formation + Delta-G solvation = -135.598772 kcal Electronic energy + Delta-G solvation = -16940.426982 eV Core-core repulsion = 13965.773963 eV Total energy + Delta-G solvation = -2974.653019 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.14920 -38.56374 -37.44975 -35.37127 -33.90950 -31.30205 -30.66605 -29.05118 -27.45274 -24.44018 -22.92743 -21.77933 -19.64361 -19.23256 -17.97424 -16.91631 -16.07701 -15.74136 -15.61532 -15.20728 -14.86482 -14.54817 -14.33038 -13.84266 -13.82232 -13.02098 -12.95093 -12.75542 -12.26962 -11.92324 -11.66088 -11.55796 -11.30303 -11.09209 -10.96377 -10.63709 -10.45550 -10.24567 -9.74968 -9.55438 -9.39296 -8.38740 -8.01285 -6.44711 -3.86169 1.74201 3.19012 3.25017 3.28274 3.51489 3.83730 3.95285 4.20643 4.48811 4.62447 4.65769 4.76442 4.95036 5.11354 5.19240 5.21152 5.24658 5.43688 5.49935 5.60088 5.64247 5.69078 5.80362 5.89259 6.02365 6.07351 6.19577 7.27401 7.34058 7.52504 8.01488 8.57079 9.14033 9.48002 9.99520 10.72864 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.054016 B = 0.004213 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.239574 B = 6643.858418 C = 6915.900652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.104 0.896 9 N -0.559 5.559 10 C 0.442 3.558 11 O -0.576 6.576 12 C 0.051 3.949 13 O -0.346 6.346 14 C 0.094 3.906 15 H 0.064 0.936 16 C -0.123 4.123 17 C -0.110 4.110 18 C -0.172 4.172 19 C 0.366 3.634 20 O -0.460 6.460 21 C -0.196 4.196 22 H 0.273 0.727 23 H 0.393 0.607 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 -16.512 1.104 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.431 4.431 8 H 0.122 0.878 9 N -0.197 5.197 10 C 0.227 3.773 11 O -0.460 6.460 12 C -0.029 4.029 13 O -0.264 6.264 14 C 0.035 3.965 15 H 0.082 0.918 16 C -0.161 4.161 17 C -0.148 4.148 18 C -0.209 4.209 19 C 0.242 3.758 20 O -0.333 6.333 21 C -0.234 4.234 22 H 0.083 0.917 23 H 0.227 0.773 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.359 -16.477 0.781 16.499 hybrid contribution -0.500 0.880 -0.067 1.015 sum -0.141 -15.596 0.714 15.613 Atomic orbital electron populations 1.69605 1.05967 1.28406 1.50226 1.25277 0.95656 0.99756 0.97113 0.85885 0.78754 0.80254 0.79149 1.20926 1.19815 1.19825 1.19668 0.93411 0.81992 1.47981 0.87828 1.41749 1.09233 1.04278 1.64453 1.19513 0.88377 0.84295 0.85159 1.90543 1.13664 1.86929 1.54848 1.22278 0.92019 0.87615 1.00969 1.88093 1.31702 1.11895 1.94681 1.21996 0.96738 0.84903 0.92821 0.91773 1.21652 0.99283 0.93016 1.02108 1.21468 1.01710 0.96596 0.94993 1.22355 1.02648 0.98828 0.97110 1.24833 0.83026 0.91307 0.76665 1.90412 1.23319 1.82939 1.36630 1.22912 1.04707 0.95354 1.00450 0.91715 0.77345 0.91646 0.91770 0.90241 0.90032 0.89987 0.91278 0.88114 0.89301 0.89078 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 10 C 0.44 10.74 7.86 -10.98 -0.09 10.65 16 11 O -0.58 -16.38 16.07 -14.36 -0.23 -16.61 16 12 C 0.05 0.93 6.23 36.01 0.22 1.15 16 13 O -0.35 -6.08 9.52 -55.14 -0.53 -6.60 16 14 C 0.09 1.17 2.62 -26.63 -0.07 1.10 16 15 H 0.06 0.73 7.79 -51.93 -0.40 0.33 16 16 C -0.12 -1.21 5.46 -26.78 -0.15 -1.36 16 17 C -0.11 -0.80 5.94 -26.64 -0.16 -0.96 16 18 C -0.17 -1.34 6.17 -27.48 -0.17 -1.51 16 19 C 0.37 4.09 6.72 -28.47 -0.19 3.90 16 20 O -0.46 -6.73 17.89 6.00 0.11 -6.62 16 21 C -0.20 -2.29 5.79 -27.48 -0.16 -2.45 16 22 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 23 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 24 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 25 H 0.06 1.03 8.03 -51.93 -0.42 0.61 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 1.13 8.02 -51.93 -0.42 0.72 16 33 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 286.94 15.07 4.32 4.32 Total: -1.00 -33.33 286.94 -6.13 -39.46 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.45 Total: 5.63 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -1.00 Total: 2.50 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.67 Total: -38.00 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.65 Total: -29.83 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.33 -6.13 -39.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712745816.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.139 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds