Wall clock time and date at job start Mon Mar 30 2020 03:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47194 * 120.00507 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00070 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 O 1.42897 * 109.46862 * 180.02562 * 12 10 9 14 14 C 1.42902 * 113.99770 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.48441 * 330.00036 * 14 13 12 16 16 C 1.52954 * 109.48600 * 209.97023 * 14 13 12 17 17 C 1.52952 * 109.82032 * 176.42255 * 16 14 13 18 18 C 1.53229 * 109.40708 * 63.60145 * 17 16 14 19 19 C 1.51276 * 108.53221 * 305.37253 * 18 17 16 20 20 O 1.20757 * 120.84524 * 231.35949 * 19 18 17 21 21 C 1.51274 * 118.31082 * 51.33894 * 19 18 17 22 22 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 23 23 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 24 24 H 1.09002 * 109.46986 * 300.00334 * 12 10 9 25 25 H 1.09000 * 109.46827 * 60.00337 * 12 10 9 26 26 H 1.09001 * 109.41489 * 296.53241 * 16 14 13 27 27 H 1.08999 * 109.41320 * 56.38550 * 16 14 13 28 28 H 1.09008 * 109.48362 * 183.57928 * 17 16 14 29 29 H 1.08999 * 109.48651 * 303.60577 * 17 16 14 30 30 H 1.08998 * 109.62795 * 65.08321 * 18 17 16 31 31 H 1.08994 * 109.62984 * 185.46845 * 18 17 16 32 32 H 1.08995 * 109.63619 * 188.95555 * 21 19 18 33 33 H 1.09001 * 109.61327 * 68.38108 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1020 1.6964 1.2124 6 1 3.1018 1.6964 -1.2125 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 8 2.1725 -5.9490 0.0027 14 6 1.5579 -7.2392 0.0027 15 1 0.5980 -7.1846 0.5161 16 6 2.4660 -8.2369 0.7234 17 6 1.7766 -9.5997 0.8061 18 6 1.5665 -10.1506 -0.6082 19 6 0.8133 -9.1192 -1.4190 20 8 -0.1826 -9.4202 -2.0320 21 6 1.3392 -7.7010 -1.4419 22 1 -0.4850 0.8401 0.0004 23 1 0.3534 -2.3906 0.0024 24 1 0.6175 -4.9205 0.8924 25 1 0.6169 -4.9209 -0.8876 26 1 3.4022 -8.3371 0.1742 27 1 2.6739 -7.8755 1.7306 28 1 2.4004 -10.2887 1.3757 29 1 0.8115 -9.4896 1.3007 30 1 2.5331 -10.3465 -1.0722 31 1 0.9899 -11.0743 -0.5594 32 1 0.6139 -7.0492 -1.9288 33 1 2.2848 -7.6701 -1.9833 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712745816.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:19 Heat of formation + Delta-G solvation = -158.608617 kcal Electronic energy + Delta-G solvation = -16941.424764 eV Core-core repulsion = 13965.773963 eV Total energy + Delta-G solvation = -2975.650801 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.11445 -40.23480 -38.84447 -36.41102 -35.90971 -33.35318 -31.59161 -30.01381 -28.92992 -26.34128 -23.76885 -22.66746 -21.37946 -20.24867 -19.97174 -18.20359 -17.45344 -17.07793 -16.88030 -16.43591 -16.21254 -15.82484 -15.67027 -15.39170 -15.03091 -14.38606 -14.28143 -13.74246 -13.52911 -13.34031 -13.11317 -12.94931 -12.64800 -12.46873 -12.12843 -11.96883 -11.82184 -11.55166 -11.53728 -10.70220 -10.57512 -10.35506 -10.07455 -8.49993 -6.00046 0.85764 1.39178 1.42164 1.53220 1.95725 2.15579 2.44052 3.10027 3.16273 3.42086 3.66888 3.79236 3.98613 4.06618 4.10758 4.17577 4.35573 4.36786 4.41206 4.48765 4.67884 4.79785 4.91913 5.03462 5.20292 5.22820 5.34142 5.38119 5.89543 6.16854 6.41861 6.55602 7.07442 7.47339 8.02763 8.67041 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.054016 B = 0.004213 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.239574 B = 6643.858418 C = 6915.900652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.009 4.009 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.339 4.339 8 H 0.080 0.920 9 N -0.565 5.565 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.064 3.936 13 O -0.375 6.375 14 C 0.088 3.912 15 H 0.076 0.924 16 C -0.121 4.121 17 C -0.101 4.101 18 C -0.165 4.165 19 C 0.373 3.627 20 O -0.499 6.499 21 C -0.198 4.198 22 H 0.280 0.720 23 H 0.399 0.601 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.197 -17.464 1.666 17.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.209 4.209 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.469 4.469 8 H 0.098 0.902 9 N -0.203 5.203 10 C 0.222 3.778 11 O -0.511 6.511 12 C -0.016 4.016 13 O -0.293 6.293 14 C 0.030 3.970 15 H 0.094 0.906 16 C -0.159 4.159 17 C -0.138 4.138 18 C -0.202 4.202 19 C 0.251 3.749 20 O -0.375 6.375 21 C -0.236 4.236 22 H 0.089 0.911 23 H 0.233 0.767 24 H 0.112 0.888 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.127 0.873 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.130 -17.445 1.351 17.498 hybrid contribution -0.434 1.136 -0.250 1.242 sum -0.304 -16.309 1.101 16.349 Atomic orbital electron populations 1.69662 1.06878 1.29627 1.49639 1.26076 0.96568 1.02451 0.95837 0.84955 0.77782 0.76343 0.79066 1.19303 1.19524 1.19658 1.19660 0.92824 0.83782 1.50592 0.90186 1.41807 1.09441 1.04387 1.64682 1.20596 0.88191 0.85961 0.83065 1.90501 1.16027 1.87961 1.56610 1.22087 0.91269 0.84850 1.03346 1.88058 1.32816 1.13453 1.95011 1.22321 0.97867 0.83151 0.93617 0.90563 1.21693 0.99084 0.93635 1.01477 1.21460 1.02154 0.95318 0.94877 1.22382 1.03183 0.97882 0.96747 1.25187 0.82248 0.91538 0.75895 1.90409 1.25149 1.83400 1.38592 1.22910 1.04577 0.96005 1.00068 0.91070 0.76677 0.88779 0.89536 0.90172 0.90297 0.87283 0.90928 0.86004 0.88147 0.90377 0.86807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 2 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 3 Si 1.00 42.61 29.55 68.60 2.03 44.64 16 4 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.34 -19.41 9.68 84.04 0.81 -18.59 16 8 H 0.08 4.87 7.16 -2.92 -0.02 4.85 16 9 N -0.57 -29.36 5.29 -306.98 -1.62 -30.98 16 10 C 0.43 21.46 7.86 87.66 0.69 22.15 16 11 O -0.62 -36.54 16.07 15.98 0.26 -36.28 16 12 C 0.06 2.27 6.23 71.24 0.44 2.72 16 13 O -0.37 -12.92 9.52 -129.94 -1.24 -14.16 16 14 C 0.09 2.06 2.62 30.66 0.08 2.14 16 15 H 0.08 1.58 7.79 -2.39 -0.02 1.56 16 16 C -0.12 -2.12 5.46 30.56 0.17 -1.95 16 17 C -0.10 -1.12 5.94 30.65 0.18 -0.94 16 18 C -0.16 -2.06 6.17 30.11 0.19 -1.87 16 19 C 0.37 7.75 6.72 29.47 0.20 7.95 16 20 O -0.50 -14.25 17.89 -1.44 -0.03 -14.27 16 21 C -0.20 -4.42 5.79 30.11 0.17 -4.25 16 22 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 23 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 24 H 0.09 2.79 8.09 -2.39 -0.02 2.77 16 25 H 0.09 2.67 8.03 -2.39 -0.02 2.65 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.92 8.02 -2.39 -0.02 1.91 16 33 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -73.15 286.94 3.47 -69.68 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.39 Total: 22.94 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 3.40 Total: 7.35 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -1.34 Total: -79.89 kcal Atomic # 8 Polarization: -63.70 SS G_CDS: -1.01 Total: -64.71 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -73.15 3.47 -69.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712745816.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.930 kcal (2) G-P(sol) polarization free energy of solvation -73.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds