Wall clock time and date at job start Mon Mar 30 2020 04:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47706 * 2 1 4 4 C 1.50703 * 109.47361 * 239.99860 * 2 1 3 5 5 H 1.07994 * 120.00217 * 240.00300 * 4 2 1 6 6 C 1.37884 * 119.99550 * 59.99844 * 4 2 1 7 7 N 1.31514 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99869 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47099 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47158 * 120.00228 * 8 6 4 11 11 H 1.48500 * 109.46930 * 240.00564 * 8 6 4 12 12 N 1.46506 * 109.46982 * 120.00156 * 2 1 3 13 13 C 1.34772 * 120.00003 * 274.99354 * 12 2 1 14 14 O 1.21277 * 120.00079 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99948 * 179.97438 * 13 12 2 16 16 H 1.09003 * 115.54699 * 44.23515 * 15 13 12 17 17 C 1.52997 * 117.51938 * 258.53526 * 15 13 12 18 18 C 1.52998 * 117.49920 * 189.90470 * 15 13 12 19 19 C 1.52996 * 117.50132 * 215.02851 * 18 15 13 20 20 C 1.50704 * 117.49943 * 0.02791 * 18 15 13 21 21 O 1.20826 * 119.99674 * 246.99648 * 20 18 15 22 22 O 1.34229 * 120.00167 * 66.98885 * 20 18 15 23 23 H 1.08993 * 109.47298 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46948 * 299.99965 * 1 2 3 25 25 H 1.08999 * 109.46995 * 59.99281 * 1 2 3 26 26 H 0.96996 * 119.99449 * 179.97438 * 7 6 4 27 27 H 0.97006 * 119.99607 * 95.00236 * 12 2 1 28 28 H 1.09000 * 117.50209 * 145.03128 * 17 15 13 29 29 H 1.09002 * 117.50009 * 0.02562 * 17 15 13 30 30 H 1.09001 * 109.47519 * 180.08765 * 19 18 15 31 31 H 1.08998 * 109.47061 * 300.08771 * 19 18 15 32 32 H 1.09001 * 109.47086 * 60.08288 * 19 18 15 33 33 H 0.96696 * 117.00154 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1455 -2.2877 -3.6038 10 1 1.1660 -1.5866 -4.8161 11 1 3.1466 -0.1873 -4.8164 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6489 -0.7290 3.5877 16 1 3.5075 -1.3830 3.4356 17 6 1.6130 -1.1540 4.6303 18 6 2.5553 0.0157 4.9210 19 6 3.6745 -0.2141 5.9386 20 6 1.9679 1.4034 4.9032 21 8 2.6649 2.3577 5.1555 22 8 0.6706 1.5794 4.6071 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.7095 1.1618 -3.4844 27 1 2.2490 -1.6319 1.1526 28 1 1.7901 -2.0877 5.1643 29 1 0.5681 -0.9202 4.4262 30 1 3.4774 0.3743 6.8347 31 1 3.7162 -1.2714 6.2002 32 1 4.6273 0.0909 5.5058 33 1 0.3394 2.4879 4.6079 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713518794.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:03 Heat of formation + Delta-G solvation = -111.662036 kcal Electronic energy + Delta-G solvation = -17649.640154 eV Core-core repulsion = 14676.025110 eV Total energy + Delta-G solvation = -2973.615044 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.51038 -38.77845 -36.69880 -35.66476 -34.73174 -32.39321 -29.49401 -28.45307 -25.28858 -24.54454 -23.93558 -21.07079 -19.76314 -19.32683 -17.59839 -17.45293 -16.08081 -15.87531 -15.06931 -15.02638 -14.58461 -14.10968 -13.57935 -13.26240 -13.17746 -12.71645 -12.42725 -12.29924 -11.98683 -11.72089 -11.15611 -11.08119 -11.00373 -10.79892 -10.68652 -10.35080 -10.26680 -10.19286 -10.02183 -9.12076 -9.05498 -8.57915 -7.95797 -6.14587 -4.24013 2.39689 3.11256 3.22455 3.29073 3.30815 3.33071 3.76757 3.95061 4.32959 4.51323 4.71485 4.82999 5.18069 5.33690 5.43975 5.50132 5.60842 5.66594 5.88506 5.94843 6.02103 6.80555 6.92788 6.94931 7.12644 7.41640 7.52643 7.66793 7.88837 8.12447 8.31033 8.61362 8.74633 9.06234 9.43577 10.91498 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.041862 B = 0.005725 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.703723 B = 4889.694400 C = 5144.411252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.700 5.700 13 C 0.525 3.475 14 O -0.542 6.542 15 C -0.154 4.154 16 H 0.135 0.865 17 C -0.128 4.128 18 C -0.116 4.116 19 C -0.101 4.101 20 C 0.537 3.463 21 O -0.525 6.525 22 O -0.502 6.502 23 H 0.026 0.974 24 H 0.015 0.985 25 H 0.090 0.910 26 H 0.264 0.736 27 H 0.390 0.610 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.183 -5.906 13.703 14.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.346 5.346 13 C 0.308 3.692 14 O -0.421 6.421 15 C -0.175 4.175 16 H 0.153 0.847 17 C -0.165 4.165 18 C -0.117 4.117 19 C -0.158 4.158 20 C 0.381 3.619 21 O -0.415 6.415 22 O -0.312 6.312 23 H 0.046 0.954 24 H 0.035 0.965 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.223 0.777 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 1.212 -5.081 13.608 14.576 hybrid contribution 0.261 -0.297 -1.041 1.113 sum 1.472 -5.377 12.567 13.748 Atomic orbital electron populations 1.22060 0.98316 0.99135 1.00937 1.18780 0.91131 0.93961 0.79852 0.93389 1.21252 1.32452 1.13248 0.90291 0.91983 1.24898 0.94791 0.94952 0.99106 1.69914 1.35901 1.22441 1.23817 0.86380 0.78603 0.79509 0.82518 1.19726 1.20848 1.20864 1.46398 1.64610 1.13518 1.10117 1.19393 0.78735 0.87046 0.83992 1.90645 1.51366 1.15871 1.84224 1.22672 1.03428 1.02630 0.88817 0.84727 1.23267 0.97120 0.97006 0.99140 1.21034 1.01712 0.89211 0.99786 1.21208 0.95894 1.02023 0.96720 1.21473 0.79788 0.89824 0.70839 1.90644 1.61127 1.42601 1.47124 1.84404 1.27221 1.37543 1.82082 0.95450 0.96549 0.89186 0.92599 0.77724 0.86905 0.86765 0.91358 0.90971 0.91055 0.73403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.70 2.56 -69.08 -0.18 6.52 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.91 11.32 55.43 0.63 -24.28 16 8 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.70 -14.35 5.07 -54.93 -0.28 -14.63 16 13 C 0.52 10.37 7.51 -10.99 -0.08 10.28 16 14 O -0.54 -12.81 12.93 -15.87 -0.21 -13.02 16 15 C -0.15 -2.18 5.91 -91.77 -0.54 -2.72 16 16 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16 17 C -0.13 -1.46 9.41 -26.73 -0.25 -1.71 16 18 C -0.12 -1.58 2.63 -155.66 -0.41 -1.99 16 19 C -0.10 -1.06 9.56 37.16 0.36 -0.71 16 20 C 0.54 9.21 5.68 36.01 0.20 9.41 16 21 O -0.53 -10.45 17.49 -18.75 -0.33 -10.78 16 22 O -0.50 -7.92 11.27 -46.41 -0.52 -8.45 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.39 6.83 8.54 -40.82 -0.35 6.48 16 28 H 0.11 0.88 8.05 -51.93 -0.42 0.46 16 29 H 0.11 1.45 7.62 -51.93 -0.40 1.05 16 30 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.41 5.04 9.10 45.56 0.41 5.46 16 LS Contribution 287.05 15.07 4.33 4.33 Total: -1.00 -33.57 287.05 -5.87 -39.44 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -3.52 Total: 8.74 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -0.95 Total: 3.11 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.35 Total: -38.91 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -1.06 Total: -32.24 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.57 -5.87 -39.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713518794.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.222 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds