Wall clock time and date at job start Mon Mar 30 2020 04:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47706 * 2 1 4 4 C 1.50703 * 109.47361 * 239.99860 * 2 1 3 5 5 H 1.07994 * 120.00217 * 240.00300 * 4 2 1 6 6 C 1.37884 * 119.99550 * 59.99844 * 4 2 1 7 7 N 1.31514 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99869 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47099 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47158 * 120.00228 * 8 6 4 11 11 H 1.48500 * 109.46930 * 240.00564 * 8 6 4 12 12 N 1.46506 * 109.46982 * 120.00156 * 2 1 3 13 13 C 1.34772 * 120.00003 * 274.99354 * 12 2 1 14 14 O 1.21277 * 120.00079 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99948 * 179.97438 * 13 12 2 16 16 H 1.09003 * 115.54699 * 44.23515 * 15 13 12 17 17 C 1.52997 * 117.51938 * 258.53526 * 15 13 12 18 18 C 1.52998 * 117.49920 * 189.90470 * 15 13 12 19 19 C 1.52996 * 117.50132 * 215.02851 * 18 15 13 20 20 C 1.50704 * 117.49943 * 0.02791 * 18 15 13 21 21 O 1.20826 * 119.99674 * 246.99648 * 20 18 15 22 22 O 1.34229 * 120.00167 * 66.98885 * 20 18 15 23 23 H 1.08993 * 109.47298 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46948 * 299.99965 * 1 2 3 25 25 H 1.08999 * 109.46995 * 59.99281 * 1 2 3 26 26 H 0.96996 * 119.99449 * 179.97438 * 7 6 4 27 27 H 0.97006 * 119.99607 * 95.00236 * 12 2 1 28 28 H 1.09000 * 117.50209 * 145.03128 * 17 15 13 29 29 H 1.09002 * 117.50009 * 0.02562 * 17 15 13 30 30 H 1.09001 * 109.47519 * 180.08765 * 19 18 15 31 31 H 1.08998 * 109.47061 * 300.08771 * 19 18 15 32 32 H 1.09001 * 109.47086 * 60.08288 * 19 18 15 33 33 H 0.96696 * 117.00154 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1455 -2.2877 -3.6038 10 1 1.1660 -1.5866 -4.8161 11 1 3.1466 -0.1873 -4.8164 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6489 -0.7290 3.5877 16 1 3.5075 -1.3830 3.4356 17 6 1.6130 -1.1540 4.6303 18 6 2.5553 0.0157 4.9210 19 6 3.6745 -0.2141 5.9386 20 6 1.9679 1.4034 4.9032 21 8 2.6649 2.3577 5.1555 22 8 0.6706 1.5794 4.6071 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.7095 1.1618 -3.4844 27 1 2.2490 -1.6319 1.1526 28 1 1.7901 -2.0877 5.1643 29 1 0.5681 -0.9202 4.4262 30 1 3.4774 0.3743 6.8347 31 1 3.7162 -1.2714 6.2002 32 1 4.6273 0.0909 5.5058 33 1 0.3394 2.4879 4.6079 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713518794.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:03 Heat of formation + Delta-G solvation = -136.067084 kcal Electronic energy + Delta-G solvation = -17650.698436 eV Core-core repulsion = 14676.025110 eV Total energy + Delta-G solvation = -2974.673326 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.79831 -40.30096 -37.96922 -37.01471 -36.57537 -34.31962 -31.17446 -29.59772 -27.35606 -25.78032 -25.21186 -22.71978 -21.25657 -20.73482 -19.09205 -18.83313 -17.82203 -17.36010 -16.79303 -16.47091 -15.94921 -15.78256 -15.00207 -14.68815 -14.41673 -14.08392 -13.91208 -13.65101 -13.23717 -13.01851 -12.96312 -12.87466 -12.73188 -12.42228 -12.29069 -12.13071 -11.85109 -11.27048 -11.22244 -11.09874 -10.73951 -10.58799 -9.76617 -8.18891 -6.36592 1.13942 1.44299 1.45278 1.57428 1.68415 2.14215 2.35249 2.54368 2.76077 3.11917 3.43244 3.69733 3.73094 4.16695 4.40864 4.56694 4.74596 4.82522 4.86553 4.92269 4.98019 5.03919 5.09134 5.24044 5.42385 5.59853 5.67895 5.70337 5.89372 6.08804 6.71949 6.93483 7.05210 7.31223 7.53506 8.87757 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.041862 B = 0.005725 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.703723 B = 4889.694400 C = 5144.411252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.271 3.729 3 H -0.007 1.007 4 C -0.546 4.546 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.974 3.026 9 H -0.257 1.257 10 H -0.278 1.278 11 H -0.286 1.286 12 N -0.695 5.695 13 C 0.515 3.485 14 O -0.590 6.590 15 C -0.160 4.160 16 H 0.175 0.825 17 C -0.094 4.094 18 C -0.129 4.129 19 C -0.097 4.097 20 C 0.525 3.475 21 O -0.565 6.565 22 O -0.506 6.506 23 H 0.042 0.958 24 H 0.012 0.988 25 H 0.064 0.936 26 H 0.265 0.735 27 H 0.408 0.592 28 H 0.166 0.834 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.114 0.886 32 H 0.063 0.937 33 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 -9.123 14.543 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.167 3.833 3 H 0.011 0.989 4 C -0.584 4.584 5 H 0.094 0.906 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.181 1.181 10 H -0.204 1.204 11 H -0.212 1.212 12 N -0.344 5.344 13 C 0.302 3.698 14 O -0.472 6.472 15 C -0.180 4.180 16 H 0.192 0.808 17 C -0.131 4.131 18 C -0.131 4.131 19 C -0.153 4.153 20 C 0.371 3.629 21 O -0.458 6.458 22 O -0.318 6.318 23 H 0.061 0.939 24 H 0.031 0.969 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.244 0.756 28 H 0.184 0.816 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.082 0.918 33 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 2.065 -8.344 14.475 16.835 hybrid contribution -0.063 0.795 -1.273 1.503 sum 2.002 -7.549 13.202 15.339 Atomic orbital electron populations 1.21859 0.98130 0.99525 0.99437 1.18340 0.91233 0.91701 0.81988 0.98877 1.21595 1.32499 1.13567 0.90709 0.90587 1.25840 0.94870 0.95583 1.02483 1.70070 1.37151 1.24042 1.24551 0.85263 0.78092 0.78518 0.78257 1.18093 1.20383 1.21180 1.46111 1.64770 1.14229 1.09246 1.20390 0.77493 0.86716 0.85226 1.90629 1.53125 1.18268 1.85197 1.22656 1.06018 1.03299 0.86072 0.80789 1.23502 0.95450 0.97789 0.96356 1.21333 1.03635 0.87822 1.00299 1.21294 0.94036 1.04659 0.95346 1.22408 0.79636 0.91282 0.69582 1.90610 1.61881 1.44288 1.49009 1.84397 1.27169 1.38527 1.81667 0.93870 0.96921 0.91761 0.92593 0.75629 0.81608 0.88298 0.91745 0.86740 0.91814 0.72389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 9.26 71.98 0.67 -5.94 16 2 C 0.27 14.03 2.56 44.24 0.11 14.14 16 3 H -0.01 -0.42 7.58 -2.39 -0.02 -0.43 16 4 C -0.55 -28.65 8.73 25.60 0.22 -28.43 16 5 H 0.08 3.69 7.74 -2.91 -0.02 3.67 16 6 C 0.01 0.65 5.30 84.66 0.45 1.09 16 7 N -0.92 -53.08 11.32 21.45 0.24 -52.83 16 8 Si 0.97 41.74 29.54 68.60 2.03 43.77 16 9 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 10 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.70 -28.09 5.07 -446.10 -2.26 -30.35 16 13 C 0.51 20.11 7.51 87.66 0.66 20.77 16 14 O -0.59 -28.78 12.93 17.47 0.23 -28.55 16 15 C -0.16 -4.02 5.91 -11.54 -0.07 -4.09 16 16 H 0.17 3.02 8.14 -2.39 -0.02 3.00 16 17 C -0.09 -1.75 9.41 30.59 0.29 -1.46 16 18 C -0.13 -3.22 2.63 -52.93 -0.14 -3.36 16 19 C -0.10 -1.70 9.56 71.98 0.69 -1.01 16 20 C 0.53 18.07 5.68 71.24 0.40 18.47 16 21 O -0.57 -23.14 17.49 21.96 0.38 -22.75 16 22 O -0.51 -16.33 11.27 -44.57 -0.50 -16.83 16 23 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 3.58 6.07 -2.39 -0.01 3.57 16 26 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 27 H 0.41 13.41 8.54 -92.70 -0.79 12.62 16 28 H 0.17 1.41 8.05 -2.39 -0.02 1.39 16 29 H 0.10 2.22 7.62 -2.39 -0.02 2.20 16 30 H 0.06 1.18 8.08 -2.39 -0.02 1.17 16 31 H 0.11 1.03 7.90 -2.39 -0.02 1.01 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.42 10.96 9.10 -74.06 -0.67 10.28 16 Total: -1.00 -76.72 287.05 3.08 -73.65 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -0.32 Total: 23.72 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 3.28 Total: 10.19 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -2.02 Total: -83.19 kcal Atomic # 8 Polarization: -68.24 SS G_CDS: 0.11 Total: -68.14 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -76.72 3.08 -73.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713518794.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.420 kcal (2) G-P(sol) polarization free energy of solvation -76.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds