Wall clock time and date at job start Mon Mar 30 2020 03:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50694 * 115.55070 * 2 1 4 4 O 1.20824 * 120.00085 * 327.34393 * 3 2 1 5 5 O 1.34231 * 119.99931 * 147.33951 * 3 2 1 6 6 C 1.53080 * 117.49322 * 145.73604 * 2 1 3 7 7 C 1.53001 * 59.98298 * 107.47974 * 6 2 1 8 8 H 1.09000 * 117.50014 * 252.49456 * 7 6 2 9 9 C 1.50707 * 117.49720 * 107.49900 * 7 6 2 10 10 O 1.21276 * 119.99860 * 281.34354 * 9 7 6 11 11 N 1.34778 * 119.99903 * 101.34027 * 9 7 6 12 12 C 1.46498 * 120.00046 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47252 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.46887 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00318 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99623 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00230 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99832 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47234 * 60.00002 * 18 16 14 20 20 H 1.48503 * 109.47052 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47019 * 299.99479 * 18 16 14 22 22 H 1.08997 * 109.46947 * 205.67145 * 1 2 3 23 23 H 1.09002 * 109.46825 * 325.66542 * 1 2 3 24 24 H 1.08998 * 109.47139 * 85.66539 * 1 2 3 25 25 H 0.96701 * 116.99900 * 180.02562 * 5 3 2 26 26 H 1.09000 * 117.49240 * 359.97438 * 6 2 1 27 27 H 1.09002 * 117.51009 * 214.96274 * 6 2 1 28 28 H 0.97002 * 120.00083 * 0.02562 * 11 9 7 29 29 H 1.09004 * 109.47110 * 59.99779 * 12 11 9 30 30 H 1.08999 * 109.46888 * 300.00213 * 12 11 9 31 31 H 1.08998 * 109.47054 * 300.00326 * 13 12 11 32 32 H 1.09005 * 109.46631 * 59.99719 * 13 12 11 33 33 H 0.97002 * 120.00474 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 1.6458 2.2846 -0.5646 5 8 3.3525 1.5430 0.6273 6 6 2.2368 -1.1223 0.7645 7 6 2.2364 -1.1207 -0.7655 8 1 1.6112 -1.8578 -1.2694 9 6 3.5293 -0.7806 -1.4613 10 8 3.8802 0.3763 -1.5569 11 7 4.2954 -1.7621 -1.9771 12 6 5.5524 -1.4315 -2.6530 13 6 6.2226 -2.7174 -3.1411 14 6 7.5153 -2.3772 -3.8368 15 1 7.8279 -1.3470 -3.9220 16 6 8.2990 -3.3813 -4.3647 17 7 7.9187 -4.6360 -4.2605 18 14 9.9018 -2.9597 -5.2265 19 1 10.8052 -2.2609 -4.2775 20 1 10.5523 -4.2079 -5.7003 21 1 9.6225 -2.0756 -6.3864 22 1 -0.3633 -0.9262 0.4452 23 1 -0.3633 0.8486 0.5796 24 1 -0.3633 0.0777 -1.0247 25 1 3.7303 2.4327 0.6004 26 1 1.6113 -1.8598 1.2675 27 1 3.1720 -0.8772 1.2679 28 1 4.0145 -2.6874 -1.9009 29 1 6.2155 -0.9184 -1.9564 30 1 5.3474 -0.7825 -3.5043 31 1 6.4276 -3.3661 -2.2894 32 1 5.5596 -3.2308 -3.8375 33 1 8.4699 -5.3424 -4.6322 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713626944.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:31 Heat of formation + Delta-G solvation = -118.216716 kcal Electronic energy + Delta-G solvation = -17059.464732 eV Core-core repulsion = 14085.565456 eV Total energy + Delta-G solvation = -2973.899276 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.75229 -39.07821 -36.90983 -35.85878 -34.87033 -32.87242 -30.00371 -28.88530 -25.46279 -24.57534 -23.52279 -21.05437 -20.41683 -19.56974 -17.71891 -17.40685 -16.49323 -15.98482 -15.36853 -15.09381 -14.77944 -14.48709 -14.23485 -13.47372 -13.36025 -13.01992 -12.83333 -12.46166 -12.31808 -12.19734 -11.27987 -11.24754 -11.06619 -10.93310 -10.69126 -10.43806 -10.36171 -10.23325 -9.86166 -9.51276 -9.24963 -8.59394 -8.39503 -6.11635 -4.14742 2.18134 2.75676 3.08657 3.29927 3.33734 3.36071 3.45436 3.64500 4.27388 4.38922 4.50981 4.56032 5.08155 5.20594 5.25461 5.30111 5.45230 5.48516 5.70489 5.76700 5.86656 6.28857 6.30186 6.68961 6.73493 6.83965 7.47640 7.57894 7.85777 7.92584 8.11540 8.24190 8.54610 8.90834 9.50269 10.99900 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.047470 B = 0.004400 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.704169 B = 6362.824428 C = 6700.660650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.114 4.114 3 C 0.536 3.464 4 O -0.523 6.523 5 O -0.503 6.503 6 C -0.126 4.126 7 C -0.156 4.156 8 H 0.139 0.861 9 C 0.529 3.471 10 O -0.538 6.538 11 N -0.713 5.713 12 C 0.122 3.878 13 C 0.013 3.987 14 C -0.523 4.523 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.409 0.591 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.400 0.600 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.407 4.401 10.880 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.115 4.115 3 C 0.379 3.621 4 O -0.412 6.412 5 O -0.314 6.314 6 C -0.163 4.163 7 C -0.178 4.178 8 H 0.157 0.843 9 C 0.314 3.686 10 O -0.416 6.416 11 N -0.362 5.362 12 C 0.000 4.000 13 C -0.024 4.024 14 C -0.562 4.562 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 H 0.092 0.908 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.267 0.733 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.233 0.767 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.372 4.896 10.600 17.752 hybrid contribution 1.046 0.181 -0.648 1.243 sum -12.326 5.077 9.952 16.636 Atomic orbital electron populations 1.21229 0.88343 1.02904 1.03484 1.21075 0.95999 0.86746 1.07719 1.21494 0.77997 0.88844 0.73798 1.90657 1.64680 1.43596 1.42249 1.84405 1.36517 1.39873 1.70600 1.23322 1.03124 0.98340 0.91508 1.22595 0.97770 1.00939 0.96449 0.84310 1.19481 0.84239 0.85837 0.79076 1.90665 1.72628 1.19621 1.58719 1.46183 1.23593 1.09323 1.57066 1.21762 0.82124 1.00753 0.95366 1.19322 0.95527 0.90937 0.96661 1.21005 1.05096 0.93425 1.36659 0.92319 1.24986 0.98252 0.94923 0.96025 1.69941 1.38519 0.99174 1.45670 0.86567 0.83267 0.77670 0.80007 1.20098 1.21208 1.20101 0.90802 0.91219 0.90975 0.73278 0.86571 0.86638 0.76654 0.92444 0.92519 0.95867 0.95916 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 9.56 37.16 0.36 -0.55 16 2 C -0.11 -1.33 2.63 -155.62 -0.41 -1.74 16 3 C 0.54 8.06 5.68 36.00 0.20 8.27 16 4 O -0.52 -9.36 17.49 -18.75 -0.33 -9.69 16 5 O -0.50 -6.85 11.27 -46.41 -0.52 -7.37 16 6 C -0.13 -1.19 9.42 -26.69 -0.25 -1.44 16 7 C -0.16 -1.83 5.91 -91.77 -0.54 -2.37 16 8 H 0.14 1.22 8.14 -51.93 -0.42 0.80 16 9 C 0.53 8.78 7.55 -10.98 -0.08 8.70 16 10 O -0.54 -10.87 13.27 -15.86 -0.21 -11.08 16 11 N -0.71 -12.07 5.56 -60.29 -0.33 -12.40 16 12 C 0.12 2.56 5.61 -4.04 -0.02 2.54 16 13 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 14 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 18 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H 0.07 0.44 7.90 -51.93 -0.41 0.03 16 23 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.41 4.17 9.10 45.56 0.41 4.59 16 26 H 0.12 0.72 8.05 -51.93 -0.42 0.30 16 27 H 0.12 1.23 7.62 -51.93 -0.40 0.83 16 28 H 0.40 5.73 8.47 -40.82 -0.35 5.39 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 291.88 15.07 4.40 4.40 Total: -1.00 -34.39 291.88 -6.24 -40.63 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -3.65 Total: 4.03 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.30 Total: 0.41 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.40 Total: -37.57 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -1.06 Total: -28.14 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.39 -6.24 -40.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713626944.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.587 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds