Wall clock time and date at job start Mon Mar 30 2020 03:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50694 * 115.55070 * 2 1 4 4 O 1.20824 * 120.00085 * 327.34393 * 3 2 1 5 5 O 1.34231 * 119.99931 * 147.33951 * 3 2 1 6 6 C 1.53080 * 117.49322 * 145.73604 * 2 1 3 7 7 C 1.53001 * 59.98298 * 107.47974 * 6 2 1 8 8 H 1.09000 * 117.50014 * 252.49456 * 7 6 2 9 9 C 1.50707 * 117.49720 * 107.49900 * 7 6 2 10 10 O 1.21276 * 119.99860 * 281.34354 * 9 7 6 11 11 N 1.34778 * 119.99903 * 101.34027 * 9 7 6 12 12 C 1.46498 * 120.00046 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47252 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.46887 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00318 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99623 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00230 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99832 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47234 * 60.00002 * 18 16 14 20 20 H 1.48503 * 109.47052 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47019 * 299.99479 * 18 16 14 22 22 H 1.08997 * 109.46947 * 205.67145 * 1 2 3 23 23 H 1.09002 * 109.46825 * 325.66542 * 1 2 3 24 24 H 1.08998 * 109.47139 * 85.66539 * 1 2 3 25 25 H 0.96701 * 116.99900 * 180.02562 * 5 3 2 26 26 H 1.09000 * 117.49240 * 359.97438 * 6 2 1 27 27 H 1.09002 * 117.51009 * 214.96274 * 6 2 1 28 28 H 0.97002 * 120.00083 * 0.02562 * 11 9 7 29 29 H 1.09004 * 109.47110 * 59.99779 * 12 11 9 30 30 H 1.08999 * 109.46888 * 300.00213 * 12 11 9 31 31 H 1.08998 * 109.47054 * 300.00326 * 13 12 11 32 32 H 1.09005 * 109.46631 * 59.99719 * 13 12 11 33 33 H 0.97002 * 120.00474 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 1.6458 2.2846 -0.5646 5 8 3.3525 1.5430 0.6273 6 6 2.2368 -1.1223 0.7645 7 6 2.2364 -1.1207 -0.7655 8 1 1.6112 -1.8578 -1.2694 9 6 3.5293 -0.7806 -1.4613 10 8 3.8802 0.3763 -1.5569 11 7 4.2954 -1.7621 -1.9771 12 6 5.5524 -1.4315 -2.6530 13 6 6.2226 -2.7174 -3.1411 14 6 7.5153 -2.3772 -3.8368 15 1 7.8279 -1.3470 -3.9220 16 6 8.2990 -3.3813 -4.3647 17 7 7.9187 -4.6360 -4.2605 18 14 9.9018 -2.9597 -5.2265 19 1 10.8052 -2.2609 -4.2775 20 1 10.5523 -4.2079 -5.7003 21 1 9.6225 -2.0756 -6.3864 22 1 -0.3633 -0.9262 0.4452 23 1 -0.3633 0.8486 0.5796 24 1 -0.3633 0.0777 -1.0247 25 1 3.7303 2.4327 0.6004 26 1 1.6113 -1.8598 1.2675 27 1 3.1720 -0.8772 1.2679 28 1 4.0145 -2.6874 -1.9009 29 1 6.2155 -0.9184 -1.9564 30 1 5.3474 -0.7825 -3.5043 31 1 6.4276 -3.3661 -2.2894 32 1 5.5596 -3.2308 -3.8375 33 1 8.4699 -5.3424 -4.6322 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713626944.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:31 Heat of formation + Delta-G solvation = -142.966578 kcal Electronic energy + Delta-G solvation = -17060.537967 eV Core-core repulsion = 14085.565456 eV Total energy + Delta-G solvation = -2974.972511 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.85943 -40.37973 -37.96282 -37.02668 -36.53181 -34.82684 -31.73705 -29.79782 -27.13482 -25.65507 -24.84085 -22.81296 -21.59630 -20.68252 -18.86267 -18.72547 -18.36335 -17.24410 -16.68103 -16.52697 -16.35029 -16.10783 -15.42794 -14.81519 -14.48462 -14.28184 -14.09592 -13.88687 -13.25963 -13.23931 -12.98778 -12.92696 -12.55953 -12.44502 -12.25178 -11.89943 -11.69359 -11.49391 -11.29294 -11.25916 -10.82908 -10.60597 -10.04662 -8.24770 -6.35220 1.09822 1.41561 1.43358 1.51382 1.52182 2.05150 2.27836 2.43569 2.69129 3.10078 3.38234 3.58431 3.68141 4.05522 4.39643 4.45125 4.47570 4.56733 4.81508 4.83354 4.85861 4.96613 5.01853 5.23119 5.26732 5.47530 5.57458 5.68802 5.77648 6.15375 6.58514 6.77471 7.03808 7.23043 7.34129 8.86746 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.047470 B = 0.004400 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.704169 B = 6362.824428 C = 6700.660650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.128 4.128 3 C 0.525 3.475 4 O -0.563 6.563 5 O -0.506 6.506 6 C -0.096 4.096 7 C -0.160 4.160 8 H 0.177 0.823 9 C 0.523 3.477 10 O -0.580 6.580 11 N -0.707 5.707 12 C 0.142 3.858 13 C 0.024 3.976 14 C -0.550 4.550 15 H 0.056 0.944 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.963 3.037 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.270 1.270 22 H 0.112 0.888 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.418 0.582 26 H 0.164 0.836 27 H 0.102 0.898 28 H 0.414 0.586 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.012 0.988 32 H 0.010 0.990 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.197 3.372 11.673 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.129 4.129 3 C 0.370 3.630 4 O -0.455 6.455 5 O -0.318 6.318 6 C -0.133 4.133 7 C -0.181 4.181 8 H 0.194 0.806 9 C 0.310 3.690 10 O -0.461 6.461 11 N -0.357 5.357 12 C 0.018 3.982 13 C -0.014 4.014 14 C -0.588 4.588 15 H 0.074 0.926 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.787 3.213 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.195 1.195 22 H 0.131 0.869 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.278 0.722 26 H 0.182 0.818 27 H 0.120 0.880 28 H 0.251 0.749 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.030 0.970 32 H 0.028 0.972 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.172 3.847 11.417 18.601 hybrid contribution 1.313 0.540 -0.861 1.660 sum -12.859 4.387 10.556 17.205 Atomic orbital electron populations 1.21305 0.86058 1.04720 1.03434 1.21338 0.97505 0.85117 1.08985 1.22360 0.77778 0.90041 0.72780 1.90625 1.65644 1.45263 1.43975 1.84398 1.36331 1.40851 1.70224 1.23543 1.02758 0.97431 0.89572 1.22644 0.95390 1.01995 0.98051 0.80564 1.20349 0.85459 0.84886 0.78298 1.90651 1.73970 1.21364 1.60141 1.45968 1.22381 1.10495 1.56893 1.21207 0.83675 0.98475 0.94812 1.19124 0.94654 0.91977 0.95621 1.21433 1.06572 0.93537 1.37289 0.92562 1.25826 1.01676 0.94770 0.96616 1.70037 1.39894 1.00044 1.46440 0.85535 0.79073 0.77702 0.78962 1.19384 1.20440 1.19521 0.86929 0.91778 0.91650 0.72179 0.81839 0.88000 0.74934 0.93623 0.94004 0.96997 0.97201 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 9.56 71.98 0.69 -0.76 16 2 C -0.13 -2.69 2.63 -52.90 -0.14 -2.83 16 3 C 0.53 15.71 5.68 71.23 0.40 16.11 16 4 O -0.56 -20.59 17.49 21.97 0.38 -20.20 16 5 O -0.51 -13.87 11.27 -44.59 -0.50 -14.37 16 6 C -0.10 -1.45 9.42 30.62 0.29 -1.16 16 7 C -0.16 -3.29 5.91 -11.54 -0.07 -3.36 16 8 H 0.18 2.30 8.14 -2.39 -0.02 2.28 16 9 C 0.52 16.87 7.55 87.66 0.66 17.53 16 10 O -0.58 -23.68 13.27 17.47 0.23 -23.45 16 11 N -0.71 -23.47 5.56 -463.06 -2.57 -26.05 16 12 C 0.14 6.06 5.61 86.38 0.48 6.54 16 13 C 0.02 1.18 5.09 29.85 0.15 1.33 16 14 C -0.55 -30.61 9.11 25.60 0.23 -30.38 16 15 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 16 C 0.01 0.57 5.46 84.65 0.46 1.03 16 17 N -0.92 -53.61 13.29 21.45 0.28 -53.33 16 18 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H 0.11 0.76 7.90 -2.39 -0.02 0.74 16 23 H 0.06 1.02 8.08 -2.39 -0.02 1.00 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.42 8.90 9.10 -74.06 -0.67 8.23 16 26 H 0.16 0.99 8.05 -2.39 -0.02 0.97 16 27 H 0.10 1.89 7.62 -2.39 -0.02 1.87 16 28 H 0.41 11.29 8.47 -92.71 -0.79 10.50 16 29 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -75.89 291.88 2.69 -73.19 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -0.32 Total: 14.74 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 3.17 Total: 4.06 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -2.29 Total: -79.37 kcal Atomic # 8 Polarization: -58.14 SS G_CDS: 0.11 Total: -58.02 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -75.89 2.69 -73.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713626944.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.775 kcal (2) G-P(sol) polarization free energy of solvation -75.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds