Wall clock time and date at job start Mon Mar 30 2020 03:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99972 * 2 1 4 4 C 1.50698 * 109.47170 * 89.99652 * 3 2 1 5 5 H 1.07997 * 119.99931 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99720 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99985 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 120.00450 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47507 * 89.99341 * 8 6 4 10 10 H 1.48508 * 109.46485 * 329.99658 * 8 6 4 11 11 H 1.48498 * 109.47337 * 209.99929 * 8 6 4 12 12 C 1.34776 * 120.00106 * 179.97438 * 2 1 3 13 13 O 1.21282 * 120.00136 * 180.02562 * 12 2 1 14 14 C 1.50695 * 119.99973 * 0.02562 * 12 2 1 15 15 H 1.09004 * 115.54951 * 53.84001 * 14 12 2 16 16 C 1.53005 * 117.49725 * 199.54428 * 14 12 2 17 17 C 1.52999 * 117.49926 * 268.16869 * 14 12 2 18 18 C 1.53000 * 117.49671 * 145.02336 * 17 14 12 19 19 C 1.50691 * 117.49789 * 0.02562 * 17 14 12 20 20 O 1.20830 * 119.99738 * 245.93508 * 19 17 14 21 21 O 1.34224 * 120.00440 * 65.93492 * 19 17 14 22 22 H 1.09004 * 109.46766 * 90.00512 * 1 2 3 23 23 H 1.09001 * 109.46734 * 210.00175 * 1 2 3 24 24 H 1.08996 * 109.47228 * 330.00487 * 1 2 3 25 25 H 1.09006 * 109.46641 * 329.99663 * 3 2 1 26 26 H 1.09002 * 109.46959 * 209.99869 * 3 2 1 27 27 H 0.97000 * 120.00476 * 180.02562 * 7 6 4 28 28 H 1.09000 * 117.49365 * 214.97926 * 16 14 12 29 29 H 1.08993 * 117.49817 * 0.02562 * 16 14 12 30 30 H 1.08995 * 109.47674 * 59.99981 * 18 17 14 31 31 H 1.09005 * 109.46944 * 179.97438 * 18 17 14 32 32 H 1.09003 * 109.47129 * 299.99671 * 18 17 14 33 33 H 0.96699 * 117.00280 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 1.4208 5 1 2.0980 1.0959 2.2416 6 6 3.1268 2.8775 1.6726 7 7 3.3456 3.2575 2.9126 8 14 3.7339 3.9288 0.2528 9 1 2.6825 4.9077 -0.1232 10 1 4.0397 3.0591 -0.9114 11 1 4.9620 4.6550 0.6643 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3855 -2.4723 0.0005 15 1 0.6482 -2.5894 -0.7937 16 6 2.1397 -3.7234 0.4551 17 6 1.0693 -3.1054 1.3570 18 6 -0.2573 -3.8552 1.4945 19 6 1.5346 -2.3760 2.5907 20 8 2.3804 -2.8674 3.3001 21 8 1.0096 -1.1805 2.9017 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5137 25 1 1.6084 2.0284 -0.5139 26 1 3.1500 1.1384 -0.5138 27 1 3.8224 4.0834 3.0898 28 1 1.8988 -4.6640 -0.0402 29 1 3.1807 -3.6025 0.7546 30 1 -0.2861 -4.6771 0.7793 31 1 -0.3478 -4.2510 2.5062 32 1 -1.0831 -3.1719 1.2962 33 1 1.3394 -0.7512 3.7030 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713627355.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:36 Heat of formation + Delta-G solvation = -95.958648 kcal Electronic energy + Delta-G solvation = -18211.579304 eV Core-core repulsion = 15238.645210 eV Total energy + Delta-G solvation = -2972.934094 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.55469 -38.89317 -36.70163 -35.58970 -34.88409 -32.49167 -29.28299 -28.45673 -25.96122 -24.50420 -24.12270 -21.57904 -19.81436 -18.61942 -17.49750 -16.97619 -16.80916 -15.94032 -15.47389 -14.93093 -14.38509 -14.09288 -13.73890 -13.56086 -13.17403 -12.72475 -12.34999 -12.34696 -12.21299 -11.94020 -11.75989 -11.56482 -11.10143 -10.94043 -10.68322 -10.49249 -10.39468 -10.10653 -9.95601 -9.51344 -9.08503 -8.58598 -7.68569 -6.08531 -4.06091 2.47116 2.94505 3.20937 3.26899 3.35448 3.39962 3.57584 3.97333 4.40483 4.53622 4.69225 4.80989 5.16864 5.27453 5.28969 5.46953 5.51929 5.65782 5.73239 5.81421 5.89768 5.94221 6.12162 6.26308 6.66299 6.90338 6.96986 7.33900 7.61874 8.23509 8.26122 8.48064 8.91414 8.98334 9.52610 11.04648 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.030750 B = 0.008197 C = 0.007578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.335891 B = 3415.210679 C = 3694.198763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.583 5.583 3 C 0.214 3.786 4 C -0.524 4.524 5 H 0.080 0.920 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.873 3.127 9 H -0.276 1.276 10 H -0.265 1.265 11 H -0.284 1.284 12 C 0.529 3.471 13 O -0.537 6.537 14 C -0.159 4.159 15 H 0.133 0.867 16 C -0.115 4.115 17 C -0.117 4.117 18 C -0.106 4.106 19 C 0.514 3.486 20 O -0.512 6.512 21 O -0.494 6.494 22 H 0.041 0.959 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.026 0.974 26 H 0.039 0.961 27 H 0.264 0.736 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.252 -11.578 -5.584 16.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.313 5.313 3 C 0.094 3.906 4 C -0.563 4.563 5 H 0.098 0.902 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.700 3.300 9 H -0.201 1.201 10 H -0.189 1.189 11 H -0.210 1.210 12 C 0.314 3.686 13 O -0.414 6.414 14 C -0.181 4.181 15 H 0.151 0.849 16 C -0.153 4.153 17 C -0.119 4.119 18 C -0.163 4.163 19 C 0.356 3.644 20 O -0.400 6.400 21 O -0.305 6.305 22 H 0.060 0.940 23 H 0.082 0.918 24 H 0.094 0.906 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -9.446 -11.698 -5.632 16.056 hybrid contribution 0.468 1.084 -0.037 1.181 sum -8.978 -10.614 -5.669 15.014 Atomic orbital electron populations 1.21632 0.80707 1.03347 0.99942 1.47654 1.06402 1.06597 1.70676 1.19698 0.92440 0.79928 0.98565 1.21348 1.36580 1.07016 0.91317 0.90214 1.24855 0.95334 0.97422 0.95510 1.69877 1.41713 1.23555 1.18570 0.86889 0.78893 0.80826 0.83390 1.20147 1.18923 1.21005 1.19323 0.87369 0.84121 0.77737 1.90693 1.13664 1.86951 1.50098 1.22584 1.03754 0.94352 0.97362 0.84896 1.23235 0.98109 0.95840 0.98072 1.20976 1.00366 1.02634 0.87901 1.21299 0.92483 0.99402 1.03102 1.21967 0.78199 0.79263 0.85008 1.90695 1.30526 1.67633 1.51168 1.84505 1.64524 1.32502 1.49005 0.94009 0.91771 0.90601 0.95610 0.94267 0.92622 0.86626 0.86786 0.90761 0.91441 0.90860 0.72353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 10.24 59.85 0.61 1.95 16 2 N -0.58 -11.93 2.86 -182.95 -0.52 -12.45 16 3 C 0.21 5.23 4.23 -5.19 -0.02 5.21 16 4 C -0.52 -14.78 9.94 -34.44 -0.34 -15.12 16 5 H 0.08 2.39 7.58 -52.49 -0.40 1.99 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 7 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 8 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 C 0.53 10.90 6.24 -10.99 -0.07 10.83 16 13 O -0.54 -13.60 16.02 5.56 0.09 -13.51 16 14 C -0.16 -2.33 4.11 -91.77 -0.38 -2.71 16 15 H 0.13 1.46 8.10 -51.93 -0.42 1.03 16 16 C -0.12 -1.57 9.31 -26.72 -0.25 -1.82 16 17 C -0.12 -1.63 2.35 -155.66 -0.37 -2.00 16 18 C -0.11 -1.00 9.84 37.16 0.37 -0.63 16 19 C 0.51 9.23 6.53 36.00 0.24 9.46 16 20 O -0.51 -10.75 17.75 -18.75 -0.33 -11.08 16 21 O -0.49 -8.64 12.75 -39.24 -0.50 -9.14 16 22 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.85 6.69 -51.93 -0.35 0.50 16 24 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 25 H 0.03 0.59 7.50 -51.93 -0.39 0.20 16 26 H 0.04 1.05 6.48 -51.93 -0.34 0.71 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.12 1.09 8.05 -51.93 -0.42 0.68 16 29 H 0.11 1.91 7.81 -51.93 -0.41 1.50 16 30 H 0.07 0.52 7.90 -51.93 -0.41 0.11 16 31 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.42 6.63 9.10 45.56 0.41 7.05 16 LS Contribution 289.78 15.07 4.37 4.37 Total: -1.00 -36.25 289.78 -4.67 -40.91 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -3.56 Total: 3.49 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -0.31 Total: 7.13 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.25 Total: -39.08 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -0.74 Total: -33.73 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -36.25 -4.67 -40.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713627355.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.046 kcal (2) G-P(sol) polarization free energy of solvation -36.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds