Wall clock time and date at job start Mon Mar 30 2020 03:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99972 * 2 1 4 4 C 1.50698 * 109.47170 * 89.99652 * 3 2 1 5 5 H 1.07997 * 119.99931 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99720 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99985 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 120.00450 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47507 * 89.99341 * 8 6 4 10 10 H 1.48508 * 109.46485 * 329.99658 * 8 6 4 11 11 H 1.48498 * 109.47337 * 209.99929 * 8 6 4 12 12 C 1.34776 * 120.00106 * 179.97438 * 2 1 3 13 13 O 1.21282 * 120.00136 * 180.02562 * 12 2 1 14 14 C 1.50695 * 119.99973 * 0.02562 * 12 2 1 15 15 H 1.09004 * 115.54951 * 53.84001 * 14 12 2 16 16 C 1.53005 * 117.49725 * 199.54428 * 14 12 2 17 17 C 1.52999 * 117.49926 * 268.16869 * 14 12 2 18 18 C 1.53000 * 117.49671 * 145.02336 * 17 14 12 19 19 C 1.50691 * 117.49789 * 0.02562 * 17 14 12 20 20 O 1.20830 * 119.99738 * 245.93508 * 19 17 14 21 21 O 1.34224 * 120.00440 * 65.93492 * 19 17 14 22 22 H 1.09004 * 109.46766 * 90.00512 * 1 2 3 23 23 H 1.09001 * 109.46734 * 210.00175 * 1 2 3 24 24 H 1.08996 * 109.47228 * 330.00487 * 1 2 3 25 25 H 1.09006 * 109.46641 * 329.99663 * 3 2 1 26 26 H 1.09002 * 109.46959 * 209.99869 * 3 2 1 27 27 H 0.97000 * 120.00476 * 180.02562 * 7 6 4 28 28 H 1.09000 * 117.49365 * 214.97926 * 16 14 12 29 29 H 1.08993 * 117.49817 * 0.02562 * 16 14 12 30 30 H 1.08995 * 109.47674 * 59.99981 * 18 17 14 31 31 H 1.09005 * 109.46944 * 179.97438 * 18 17 14 32 32 H 1.09003 * 109.47129 * 299.99671 * 18 17 14 33 33 H 0.96699 * 117.00280 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 1.4208 5 1 2.0980 1.0959 2.2416 6 6 3.1268 2.8775 1.6726 7 7 3.3456 3.2575 2.9126 8 14 3.7339 3.9288 0.2528 9 1 2.6825 4.9077 -0.1232 10 1 4.0397 3.0591 -0.9114 11 1 4.9620 4.6550 0.6643 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3855 -2.4723 0.0005 15 1 0.6482 -2.5894 -0.7937 16 6 2.1397 -3.7234 0.4551 17 6 1.0693 -3.1054 1.3570 18 6 -0.2573 -3.8552 1.4945 19 6 1.5346 -2.3760 2.5907 20 8 2.3804 -2.8674 3.3001 21 8 1.0096 -1.1805 2.9017 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5137 25 1 1.6084 2.0284 -0.5139 26 1 3.1500 1.1384 -0.5138 27 1 3.8224 4.0834 3.0898 28 1 1.8988 -4.6640 -0.0402 29 1 3.1807 -3.6025 0.7546 30 1 -0.2861 -4.6771 0.7793 31 1 -0.3478 -4.2510 2.5062 32 1 -1.0831 -3.1719 1.2962 33 1 1.3394 -0.7512 3.7030 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713627355.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:36 Heat of formation + Delta-G solvation = -123.783513 kcal Electronic energy + Delta-G solvation = -18212.785881 eV Core-core repulsion = 15238.645210 eV Total energy + Delta-G solvation = -2974.140671 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.93054 -40.46345 -37.99858 -37.08398 -36.60018 -34.63100 -30.78182 -29.77660 -27.35566 -25.79970 -25.71695 -23.26400 -21.05131 -20.10411 -19.10260 -18.97698 -18.28424 -17.40545 -17.07055 -16.53076 -16.00384 -15.74890 -15.01389 -14.93568 -14.52654 -14.14103 -13.81497 -13.70605 -13.65757 -13.26601 -13.19204 -12.91251 -12.76457 -12.60563 -12.41639 -12.05404 -11.92437 -11.66848 -11.45777 -11.18105 -10.80174 -10.70522 -9.37019 -8.31948 -6.34747 1.06180 1.30136 1.35050 1.44938 1.53151 1.91310 2.21480 2.31802 2.67211 3.02215 3.42638 3.55863 3.68719 4.06982 4.13799 4.48804 4.59333 4.69724 4.75824 4.82767 4.88662 4.92886 4.97552 5.01642 5.07477 5.29045 5.47991 5.50126 5.65058 6.27988 6.66980 6.69524 6.82699 7.23371 7.38917 8.84077 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.030750 B = 0.008197 C = 0.007578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.335891 B = 3415.210679 C = 3694.198763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.588 5.588 3 C 0.220 3.780 4 C -0.529 4.529 5 H 0.046 0.954 6 C 0.010 3.990 7 N -0.944 5.944 8 Si 0.941 3.059 9 H -0.250 1.250 10 H -0.259 1.259 11 H -0.286 1.286 12 C 0.515 3.485 13 O -0.600 6.600 14 C -0.153 4.153 15 H 0.187 0.813 16 C -0.114 4.114 17 C -0.111 4.111 18 C -0.099 4.099 19 C 0.502 3.498 20 O -0.555 6.555 21 O -0.497 6.497 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.014 0.986 27 H 0.266 0.734 28 H 0.170 0.830 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.769 -12.751 -8.165 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.318 5.318 3 C 0.097 3.903 4 C -0.568 4.568 5 H 0.064 0.936 6 C -0.188 4.188 7 N -0.585 5.585 8 Si 0.764 3.236 9 H -0.175 1.175 10 H -0.184 1.184 11 H -0.212 1.212 12 C 0.303 3.697 13 O -0.482 6.482 14 C -0.174 4.174 15 H 0.204 0.796 16 C -0.151 4.151 17 C -0.113 4.113 18 C -0.156 4.156 19 C 0.346 3.654 20 O -0.446 6.446 21 O -0.309 6.309 22 H 0.100 0.900 23 H 0.107 0.893 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.188 0.812 29 H 0.089 0.911 30 H 0.130 0.870 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -12.041 -12.875 -8.227 19.453 hybrid contribution 1.257 1.432 0.866 2.093 sum -10.783 -11.444 -7.361 17.362 Atomic orbital electron populations 1.21948 0.77269 1.04077 1.02740 1.47762 1.08532 1.05351 1.70111 1.19377 0.92507 0.82582 0.95784 1.21625 1.36011 1.06511 0.92607 0.93581 1.25788 0.95611 0.99104 0.98290 1.70029 1.43080 1.24399 1.20972 0.85810 0.78761 0.79197 0.79796 1.17461 1.18368 1.21163 1.20410 0.87103 0.86068 0.76119 1.90659 1.16697 1.88081 1.52763 1.22635 1.04482 0.91030 0.99246 0.79577 1.23438 0.95976 0.97691 0.97961 1.21292 1.02742 1.02111 0.85164 1.21441 0.89676 1.00277 1.04192 1.23085 0.77354 0.78932 0.86034 1.90668 1.32422 1.68510 1.53048 1.84514 1.64483 1.32747 1.49110 0.89966 0.89327 0.91734 0.93223 0.96830 0.92525 0.81234 0.91052 0.87012 0.91742 0.89031 0.72381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.22 10.24 127.77 1.31 3.53 16 2 N -0.59 -23.44 2.86 -851.12 -2.43 -25.87 16 3 C 0.22 10.73 4.23 85.63 0.36 11.09 16 4 C -0.53 -30.69 9.94 25.60 0.25 -30.43 16 5 H 0.05 2.90 7.58 -2.91 -0.02 2.88 16 6 C 0.01 0.58 5.47 84.65 0.46 1.04 16 7 N -0.94 -59.47 13.96 21.45 0.30 -59.17 16 8 Si 0.94 44.83 27.47 68.60 1.88 46.71 16 9 H -0.25 -10.87 7.11 99.48 0.71 -10.16 16 10 H -0.26 -12.05 6.54 99.48 0.65 -11.40 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 C 0.51 20.91 6.24 87.66 0.55 21.45 16 13 O -0.60 -31.43 16.02 -3.04 -0.05 -31.48 16 14 C -0.15 -3.99 4.11 -11.54 -0.05 -4.03 16 15 H 0.19 2.86 8.10 -2.39 -0.02 2.84 16 16 C -0.11 -2.81 9.31 30.60 0.28 -2.53 16 17 C -0.11 -2.81 2.35 -52.93 -0.12 -2.94 16 18 C -0.10 -1.38 9.84 71.98 0.71 -0.67 16 19 C 0.50 18.23 6.53 71.23 0.47 18.70 16 20 O -0.56 -24.35 17.75 21.95 0.39 -23.96 16 21 O -0.50 -17.94 12.75 -51.36 -0.65 -18.59 16 22 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.09 1.98 6.69 -2.39 -0.02 1.97 16 24 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16 25 H 0.05 2.18 7.50 -2.38 -0.02 2.16 16 26 H 0.01 0.74 6.48 -2.39 -0.02 0.72 16 27 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.17 2.30 8.05 -2.39 -0.02 2.28 16 29 H 0.07 2.43 7.81 -2.39 -0.02 2.41 16 30 H 0.11 0.79 7.90 -2.39 -0.02 0.77 16 31 H 0.06 0.97 8.08 -2.38 -0.02 0.95 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.42 14.43 9.10 -74.06 -0.67 13.75 16 Total: -1.00 -85.49 289.78 4.05 -81.43 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.40 Total: 15.70 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 4.22 Total: 15.21 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -2.13 Total: -85.04 kcal Atomic # 8 Polarization: -73.71 SS G_CDS: -0.31 Total: -74.03 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.71 kcal Total: -85.49 4.05 -81.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713627355.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.350 kcal (2) G-P(sol) polarization free energy of solvation -85.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds