Wall clock time and date at job start Mon Mar 30 2020 03:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 119.99908 * 2 1 4 4 C 1.50699 * 109.46888 * 89.99948 * 3 2 1 5 5 H 1.08002 * 120.00516 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99783 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99707 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99956 * 180.27458 * 6 4 3 9 9 H 1.48497 * 109.47172 * 179.72730 * 8 6 4 10 10 H 1.48506 * 109.47132 * 299.72429 * 8 6 4 11 11 H 1.48501 * 109.47173 * 59.72550 * 8 6 4 12 12 C 1.34777 * 120.00353 * 179.97438 * 2 1 3 13 13 O 1.21273 * 120.00313 * 180.02562 * 12 2 1 14 14 C 1.50701 * 119.99542 * 0.02562 * 12 2 1 15 15 H 1.08999 * 115.55181 * 34.42203 * 14 12 2 16 16 C 1.52994 * 117.49775 * 248.74402 * 14 12 2 17 17 C 1.53003 * 117.49854 * 180.08484 * 14 12 2 18 18 C 1.53004 * 117.49526 * 0.02562 * 17 14 12 19 19 C 1.50696 * 117.50001 * 215.00715 * 17 14 12 20 20 O 1.20817 * 120.00228 * 359.97438 * 19 17 14 21 21 O 1.34231 * 119.99670 * 179.97438 * 19 17 14 22 22 H 1.09003 * 109.47277 * 90.00059 * 1 2 3 23 23 H 1.09003 * 109.46849 * 210.00119 * 1 2 3 24 24 H 1.08997 * 109.47035 * 330.00103 * 1 2 3 25 25 H 1.09001 * 109.46452 * 330.00207 * 3 2 1 26 26 H 1.08997 * 109.46855 * 210.00125 * 3 2 1 27 27 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 28 28 H 1.08994 * 117.50270 * 0.02562 * 16 14 12 29 29 H 1.09007 * 117.50171 * 145.02994 * 16 14 12 30 30 H 1.08994 * 109.47439 * 60.00127 * 18 17 14 31 31 H 1.08999 * 109.46868 * 179.97438 * 18 17 14 32 32 H 1.09001 * 109.47370 * 299.99628 * 18 17 14 33 33 H 0.96706 * 116.99491 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0974 1.0962 2.2418 6 6 3.1269 2.8775 1.6728 7 7 3.5541 3.6176 0.6731 8 14 3.4449 3.4129 3.4339 9 1 4.1925 4.6959 3.4339 10 1 2.1498 3.5947 4.1375 11 1 4.2450 2.3737 4.1304 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 1 0.4480 -2.4739 -0.5557 16 6 1.4578 -3.3297 1.2655 17 6 2.2075 -3.7627 0.0031 18 6 3.7317 -3.6292 0.0062 19 6 1.6593 -4.9385 -0.7635 20 8 0.6073 -4.8402 -1.3495 21 8 2.3397 -6.0952 -0.7952 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6083 2.0284 -0.5138 26 1 3.1499 1.1384 -0.5138 27 1 4.0310 4.4436 0.8504 28 1 2.0500 -2.9498 2.0979 29 1 0.5681 -3.8960 1.5414 30 1 4.0470 -3.0850 0.8963 31 1 4.1833 -4.6212 0.0083 32 1 4.0507 -3.0863 -0.8836 33 1 1.9479 -6.8213 -1.2997 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713627357.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:38 Heat of formation + Delta-G solvation = -98.656912 kcal Electronic energy + Delta-G solvation = -17510.787734 eV Core-core repulsion = 14537.736634 eV Total energy + Delta-G solvation = -2973.051099 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.79445 -39.22575 -36.69708 -35.99269 -34.72837 -32.60236 -28.98252 -27.84043 -25.87943 -24.79851 -23.98285 -22.06900 -20.25116 -18.12422 -17.95869 -17.13012 -16.51236 -15.84881 -15.63741 -15.18992 -14.51099 -14.26446 -13.93335 -13.19501 -12.92916 -12.52823 -12.31627 -12.17743 -12.09572 -12.05778 -11.73232 -11.58618 -11.21539 -10.93204 -10.72859 -10.59552 -10.27742 -10.13787 -10.04809 -9.64974 -8.81364 -8.44384 -7.65980 -6.05309 -4.10382 1.97134 2.76243 3.08412 3.31182 3.35778 3.38503 3.78931 4.03479 4.43042 4.51628 4.81106 4.91940 5.10240 5.26744 5.32069 5.56588 5.71097 5.75487 5.95324 5.96440 6.06928 6.18773 6.23999 6.34164 6.66241 7.03760 7.42238 7.51736 7.78772 7.90607 8.21542 8.38125 8.87461 9.05223 9.54654 11.02735 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.039848 B = 0.005675 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.498277 B = 4932.921696 C = 5143.180772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.596 5.596 3 C 0.246 3.754 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.533 3.467 13 O -0.532 6.532 14 C -0.149 4.149 15 H 0.132 0.868 16 C -0.119 4.119 17 C -0.114 4.114 18 C -0.099 4.099 19 C 0.520 3.480 20 O -0.517 6.517 21 O -0.507 6.507 22 H 0.045 0.955 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.264 0.736 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.551 -15.107 -0.917 16.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.327 5.327 3 C 0.127 3.873 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.202 1.202 12 C 0.319 3.681 13 O -0.410 6.410 14 C -0.170 4.170 15 H 0.150 0.850 16 C -0.156 4.156 17 C -0.116 4.116 18 C -0.155 4.155 19 C 0.363 3.637 20 O -0.405 6.405 21 O -0.319 6.319 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.136 0.864 29 H 0.125 0.875 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -4.919 -14.531 -0.908 15.367 hybrid contribution -0.339 -0.078 0.529 0.633 sum -5.258 -14.608 -0.379 15.530 Atomic orbital electron populations 1.21671 0.81297 1.02676 1.00554 1.48081 1.06316 1.07493 1.70821 1.19320 0.92574 0.77872 0.97574 1.21383 1.36649 1.06352 0.92204 0.92484 1.24936 0.95336 0.96361 0.97433 1.69926 1.38279 1.14350 1.30804 0.86551 0.78352 0.77832 0.84628 1.21173 1.20265 1.20180 1.19175 0.87365 0.83781 0.77770 1.90675 1.13392 1.86719 1.50198 1.22562 1.01238 0.90040 1.03179 0.85036 1.23216 1.01634 0.99981 0.90768 1.20926 0.97787 0.90860 1.02034 1.21339 0.87930 1.01122 1.05148 1.22223 0.81287 0.82734 0.77450 1.90700 1.23494 1.83463 1.42875 1.84521 1.54081 1.22969 1.70290 0.93665 0.92245 0.90659 0.94898 0.93727 0.92638 0.86373 0.87495 0.90188 0.92399 0.90759 0.73264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.01 59.85 0.60 1.93 16 2 N -0.60 -12.66 2.86 -182.95 -0.52 -13.18 16 3 C 0.25 6.39 5.16 -5.19 -0.03 6.36 16 4 C -0.53 -14.77 9.39 -34.44 -0.32 -15.09 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.53 10.96 7.44 -10.98 -0.08 10.87 16 13 O -0.53 -12.66 12.68 5.56 0.07 -12.59 16 14 C -0.15 -2.34 4.30 -91.77 -0.39 -2.74 16 15 H 0.13 1.93 6.80 -51.93 -0.35 1.58 16 16 C -0.12 -1.54 9.59 -26.70 -0.26 -1.80 16 17 C -0.11 -1.64 2.64 -155.62 -0.41 -2.05 16 18 C -0.10 -1.48 8.05 37.16 0.30 -1.18 16 19 C 0.52 6.88 7.87 36.00 0.28 7.16 16 20 O -0.52 -7.94 17.02 -18.74 -0.32 -8.26 16 21 O -0.51 -5.06 12.69 -39.26 -0.50 -5.56 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.80 6.64 -51.93 -0.34 0.46 16 24 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 25 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 26 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.12 1.57 8.05 -51.93 -0.42 1.15 16 29 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.08 1.31 7.02 -51.93 -0.36 0.95 16 31 H 0.06 0.74 7.49 -51.93 -0.39 0.35 16 32 H 0.07 1.25 7.25 -51.93 -0.38 0.88 16 33 H 0.41 2.08 9.10 45.56 0.41 2.50 16 LS Contribution 287.63 15.07 4.33 4.33 Total: -1.00 -33.68 287.63 -5.07 -38.76 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -3.45 Total: 0.48 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -0.41 Total: 5.10 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.21 Total: -38.88 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.75 Total: -26.41 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.68 -5.07 -38.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713627357.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.898 kcal (2) G-P(sol) polarization free energy of solvation -33.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds