Wall clock time and date at job start Mon Mar 30 2020 03:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99984 * 2 1 4 4 C 1.50690 * 109.47135 * 269.99835 * 3 2 1 5 5 H 1.08002 * 120.00142 * 0.02562 * 4 3 2 6 6 C 1.37887 * 120.00004 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99655 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00255 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47105 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47052 * 119.99791 * 8 6 4 11 11 H 1.48496 * 109.47283 * 240.00147 * 8 6 4 12 12 C 1.34778 * 119.99804 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99636 * 180.02562 * 12 2 1 14 14 C 1.50697 * 120.00145 * 0.02562 * 12 2 1 15 15 H 1.09002 * 115.54932 * 325.58291 * 14 12 2 16 16 C 1.53002 * 117.49992 * 111.25454 * 14 12 2 17 17 C 1.53000 * 117.50034 * 179.91227 * 14 12 2 18 18 C 1.53003 * 117.49792 * 359.97438 * 17 14 12 19 19 C 1.50692 * 117.50104 * 144.97111 * 17 14 12 20 20 O 1.20830 * 120.00022 * 0.02562 * 19 17 14 21 21 O 1.34231 * 120.00483 * 179.97438 * 19 17 14 22 22 H 1.08997 * 109.47432 * 269.99978 * 1 2 3 23 23 H 1.08998 * 109.46773 * 30.00018 * 1 2 3 24 24 H 1.08998 * 109.46925 * 149.99523 * 1 2 3 25 25 H 1.09004 * 109.47065 * 30.00242 * 3 2 1 26 26 H 1.08999 * 109.46955 * 149.99685 * 3 2 1 27 27 H 0.97003 * 119.99497 * 180.02562 * 7 6 4 28 28 H 1.09000 * 117.49996 * 215.00670 * 16 14 12 29 29 H 1.08999 * 117.49664 * 0.02562 * 16 14 12 30 30 H 1.08998 * 109.47424 * 59.99497 * 18 17 14 31 31 H 1.08998 * 109.47104 * 180.02562 * 18 17 14 32 32 H 1.09005 * 109.46764 * 299.99852 * 18 17 14 33 33 H 0.96696 * 117.00687 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4207 5 1 2.0975 1.0961 -2.2416 6 6 3.1261 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6730 8 14 3.4369 3.4177 -3.4338 9 1 2.8589 2.4176 -4.3672 10 1 2.7988 4.7381 -3.6668 11 1 4.8993 3.5264 -3.6674 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0017 15 1 0.4475 -2.4742 0.5538 16 6 1.4587 -3.3293 -1.2671 17 6 2.2074 -3.7627 -0.0043 18 6 3.7316 -3.6293 -0.0062 19 6 1.6589 -4.9388 0.7617 20 8 0.6066 -4.8406 1.3474 21 8 2.3387 -6.0958 0.7927 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5139 25 1 1.6084 2.0284 0.5139 26 1 3.1499 1.1384 0.5139 27 1 4.0295 4.4444 -0.8503 28 1 0.5690 -3.8949 -1.5441 29 1 2.0523 -2.9493 -2.0985 30 1 4.0500 -3.0868 0.8840 31 1 4.1832 -4.6214 -0.0084 32 1 4.0476 -3.0847 -0.8960 33 1 1.9468 -6.8220 1.2967 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713627359.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:40 Heat of formation + Delta-G solvation = -98.765337 kcal Electronic energy + Delta-G solvation = -17510.715271 eV Core-core repulsion = 14537.659469 eV Total energy + Delta-G solvation = -2973.055801 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.79341 -39.22533 -36.69768 -35.99188 -34.72860 -32.60525 -28.98357 -27.84298 -25.88052 -24.79976 -23.98534 -22.07130 -20.25215 -18.12520 -17.95893 -17.13061 -16.51794 -15.84884 -15.63675 -15.19259 -14.51455 -14.25637 -13.93507 -13.19192 -12.93032 -12.53006 -12.31573 -12.19211 -12.09836 -12.05839 -11.73271 -11.58623 -11.22807 -10.90310 -10.72672 -10.62581 -10.27261 -10.14353 -10.04900 -9.61757 -8.81483 -8.45350 -7.65933 -6.05871 -4.10734 1.97092 2.76166 3.08370 3.28798 3.36396 3.40120 3.78899 4.03464 4.42790 4.51578 4.81057 4.91929 5.10226 5.26513 5.31894 5.56624 5.71058 5.75449 5.95316 5.96392 6.06881 6.18680 6.23895 6.34205 6.66130 7.03553 7.42203 7.51843 7.78774 7.90422 8.21288 8.37983 8.87627 9.05239 9.54453 11.02258 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.039875 B = 0.005673 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.030722 B = 4934.854934 C = 5143.839774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.596 5.596 3 C 0.245 3.755 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.533 3.467 13 O -0.532 6.532 14 C -0.149 4.149 15 H 0.132 0.868 16 C -0.118 4.118 17 C -0.114 4.114 18 C -0.099 4.099 19 C 0.520 3.480 20 O -0.517 6.517 21 O -0.507 6.507 22 H 0.045 0.955 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.263 0.737 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.561 -15.135 0.909 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.327 5.327 3 C 0.126 3.874 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.319 3.681 13 O -0.410 6.410 14 C -0.170 4.170 15 H 0.150 0.850 16 C -0.156 4.156 17 C -0.116 4.116 18 C -0.155 4.155 19 C 0.363 3.637 20 O -0.405 6.405 21 O -0.319 6.319 22 H 0.063 0.937 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.125 0.875 29 H 0.136 0.864 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -4.938 -14.564 0.895 15.404 hybrid contribution -0.330 -0.059 -0.515 0.614 sum -5.268 -14.623 0.380 15.547 Atomic orbital electron populations 1.21670 0.81296 1.02679 1.00554 1.48079 1.06317 1.07489 1.70817 1.19329 0.92589 0.77886 0.97613 1.21458 1.36449 1.06283 0.92239 0.92373 1.24943 0.95364 0.96380 0.97442 1.69947 1.38421 1.14313 1.30676 0.86436 0.78069 0.78324 0.84542 1.19814 1.20977 1.20867 1.19176 0.87366 0.83781 0.77763 1.90676 1.13388 1.86725 1.50213 1.22561 1.01237 0.90040 1.03182 0.85034 1.23217 1.01642 0.99978 0.90754 1.20924 0.97790 0.90851 1.02039 1.21341 0.87929 1.01122 1.05150 1.22227 0.81293 0.82738 0.77439 1.90704 1.23469 1.83487 1.42882 1.84516 1.54113 1.22933 1.70298 0.93663 0.90659 0.92242 0.94887 0.93716 0.92752 0.87489 0.86373 0.90758 0.92397 0.90186 0.73263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.01 59.85 0.60 1.93 16 2 N -0.60 -12.65 2.86 -182.96 -0.52 -13.18 16 3 C 0.24 6.37 5.16 -5.20 -0.03 6.34 16 4 C -0.53 -14.72 9.39 -34.44 -0.32 -15.05 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 12 C 0.53 10.95 7.44 -10.99 -0.08 10.87 16 13 O -0.53 -12.64 12.68 5.56 0.07 -12.57 16 14 C -0.15 -2.34 4.31 -91.77 -0.40 -2.74 16 15 H 0.13 1.93 6.79 -51.93 -0.35 1.58 16 16 C -0.12 -1.54 9.59 -26.69 -0.26 -1.80 16 17 C -0.11 -1.64 2.64 -155.63 -0.41 -2.05 16 18 C -0.10 -1.48 8.05 37.16 0.30 -1.18 16 19 C 0.52 6.88 7.87 36.00 0.28 7.16 16 20 O -0.52 -7.94 17.02 -18.75 -0.32 -8.26 16 21 O -0.51 -5.06 12.69 -39.26 -0.50 -5.56 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 24 H 0.06 0.80 6.64 -51.93 -0.34 0.46 16 25 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 26 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.12 1.57 8.05 -51.93 -0.42 1.16 16 30 H 0.07 1.25 7.25 -51.93 -0.38 0.87 16 31 H 0.06 0.74 7.49 -51.93 -0.39 0.35 16 32 H 0.08 1.31 7.02 -51.93 -0.36 0.95 16 33 H 0.41 2.08 9.10 45.56 0.41 2.50 16 LS Contribution 287.63 15.07 4.33 4.33 Total: -1.00 -33.73 287.63 -5.07 -38.80 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -3.44 Total: 0.41 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -0.41 Total: 5.10 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.21 Total: -38.87 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.75 Total: -26.39 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.73 -5.07 -38.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713627359.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.963 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds