Wall clock time and date at job start Mon Mar 30 2020 03:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99984 * 2 1 4 4 C 1.50690 * 109.47135 * 269.99835 * 3 2 1 5 5 H 1.08002 * 120.00142 * 0.02562 * 4 3 2 6 6 C 1.37887 * 120.00004 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99655 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00255 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47105 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47052 * 119.99791 * 8 6 4 11 11 H 1.48496 * 109.47283 * 240.00147 * 8 6 4 12 12 C 1.34778 * 119.99804 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99636 * 180.02562 * 12 2 1 14 14 C 1.50697 * 120.00145 * 0.02562 * 12 2 1 15 15 H 1.09002 * 115.54932 * 325.58291 * 14 12 2 16 16 C 1.53002 * 117.49992 * 111.25454 * 14 12 2 17 17 C 1.53000 * 117.50034 * 179.91227 * 14 12 2 18 18 C 1.53003 * 117.49792 * 359.97438 * 17 14 12 19 19 C 1.50692 * 117.50104 * 144.97111 * 17 14 12 20 20 O 1.20830 * 120.00022 * 0.02562 * 19 17 14 21 21 O 1.34231 * 120.00483 * 179.97438 * 19 17 14 22 22 H 1.08997 * 109.47432 * 269.99978 * 1 2 3 23 23 H 1.08998 * 109.46773 * 30.00018 * 1 2 3 24 24 H 1.08998 * 109.46925 * 149.99523 * 1 2 3 25 25 H 1.09004 * 109.47065 * 30.00242 * 3 2 1 26 26 H 1.08999 * 109.46955 * 149.99685 * 3 2 1 27 27 H 0.97003 * 119.99497 * 180.02562 * 7 6 4 28 28 H 1.09000 * 117.49996 * 215.00670 * 16 14 12 29 29 H 1.08999 * 117.49664 * 0.02562 * 16 14 12 30 30 H 1.08998 * 109.47424 * 59.99497 * 18 17 14 31 31 H 1.08998 * 109.47104 * 180.02562 * 18 17 14 32 32 H 1.09005 * 109.46764 * 299.99852 * 18 17 14 33 33 H 0.96696 * 117.00687 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4207 5 1 2.0975 1.0961 -2.2416 6 6 3.1261 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6730 8 14 3.4369 3.4177 -3.4338 9 1 2.8589 2.4176 -4.3672 10 1 2.7988 4.7381 -3.6668 11 1 4.8993 3.5264 -3.6674 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0017 15 1 0.4475 -2.4742 0.5538 16 6 1.4587 -3.3293 -1.2671 17 6 2.2074 -3.7627 -0.0043 18 6 3.7316 -3.6293 -0.0062 19 6 1.6589 -4.9388 0.7617 20 8 0.6066 -4.8406 1.3474 21 8 2.3387 -6.0958 0.7927 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5139 25 1 1.6084 2.0284 0.5139 26 1 3.1499 1.1384 0.5139 27 1 4.0295 4.4444 -0.8503 28 1 0.5690 -3.8949 -1.5441 29 1 2.0523 -2.9493 -2.0985 30 1 4.0500 -3.0868 0.8840 31 1 4.1832 -4.6214 -0.0084 32 1 4.0476 -3.0847 -0.8960 33 1 1.9468 -6.8220 1.2967 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713627359.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:39 Heat of formation + Delta-G solvation = -122.522986 kcal Electronic energy + Delta-G solvation = -17511.745480 eV Core-core repulsion = 14537.659469 eV Total energy + Delta-G solvation = -2974.086010 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.92494 -40.60500 -37.92410 -37.05274 -36.41534 -34.70175 -30.48018 -29.51419 -27.36595 -26.22744 -25.37384 -23.68661 -21.38623 -19.61692 -18.94072 -18.66651 -18.38160 -17.15459 -16.97210 -16.65688 -16.17973 -15.99315 -15.03483 -14.68598 -14.38228 -14.05142 -13.76501 -13.58376 -13.48786 -13.28653 -13.20279 -13.03864 -12.76026 -12.59126 -12.54310 -12.17588 -11.87383 -11.67515 -11.37564 -11.22323 -10.64040 -10.44205 -9.42030 -8.21511 -6.36336 0.94579 1.38410 1.40345 1.52141 1.59713 1.81950 2.33491 2.47469 2.69485 3.08459 3.34243 3.58213 3.72882 3.97605 4.21443 4.43941 4.55871 4.64933 4.70468 4.85282 4.91362 4.93700 4.97427 5.02883 5.23008 5.41443 5.52467 5.57686 5.83754 6.06214 6.69394 6.76727 6.96494 7.28152 7.45283 8.85956 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.039875 B = 0.005673 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.030722 B = 4934.854934 C = 5143.839774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.606 5.606 3 C 0.259 3.741 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.007 3.993 7 N -0.930 5.930 8 Si 0.970 3.030 9 H -0.265 1.265 10 H -0.271 1.271 11 H -0.282 1.282 12 C 0.525 3.475 13 O -0.576 6.576 14 C -0.158 4.158 15 H 0.149 0.851 16 C -0.093 4.093 17 C -0.120 4.120 18 C -0.091 4.091 19 C 0.532 3.468 20 O -0.539 6.539 21 O -0.498 6.498 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.023 0.977 26 H 0.000 1.000 27 H 0.267 0.733 28 H 0.143 0.857 29 H 0.114 0.886 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 -16.918 -0.412 18.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.337 5.337 3 C 0.138 3.862 4 C -0.578 4.578 5 H 0.074 0.926 6 C -0.192 4.192 7 N -0.570 5.570 8 Si 0.794 3.206 9 H -0.189 1.189 10 H -0.196 1.196 11 H -0.208 1.208 12 C 0.313 3.687 13 O -0.457 6.457 14 C -0.179 4.179 15 H 0.166 0.834 16 C -0.130 4.130 17 C -0.121 4.121 18 C -0.148 4.148 19 C 0.376 3.624 20 O -0.430 6.430 21 O -0.312 6.312 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.111 0.889 25 H 0.041 0.959 26 H 0.018 0.982 27 H 0.076 0.924 28 H 0.161 0.839 29 H 0.132 0.868 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -6.362 -16.394 -0.416 17.590 hybrid contribution 0.145 0.432 -0.037 0.457 sum -6.216 -15.962 -0.453 17.135 Atomic orbital electron populations 1.21928 0.78052 1.04068 1.02378 1.48093 1.08367 1.06205 1.70991 1.18794 0.91092 0.80045 0.96288 1.21712 1.36663 1.06528 0.92878 0.92588 1.25874 0.94914 0.96412 1.01991 1.70067 1.39043 1.14823 1.33064 0.85335 0.77832 0.78368 0.79070 1.18887 1.19639 1.20783 1.20004 0.87208 0.85106 0.76373 1.90654 1.15554 1.87576 1.51929 1.22350 1.01497 0.87788 1.06270 0.83383 1.23377 1.02299 0.97920 0.89391 1.20940 0.97046 0.90836 1.03317 1.21193 0.89079 1.01678 1.02892 1.21788 0.80825 0.83096 0.76708 1.90707 1.24458 1.84009 1.43791 1.84449 1.53606 1.22723 1.70403 0.91598 0.91177 0.88921 0.95946 0.98161 0.92432 0.83925 0.86815 0.93419 0.90010 0.92140 0.70456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.41 10.01 127.77 1.28 3.69 16 2 N -0.61 -26.06 2.86 -851.15 -2.43 -28.49 16 3 C 0.26 14.04 5.16 85.63 0.44 14.49 16 4 C -0.54 -30.85 9.39 25.60 0.24 -30.60 16 5 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 6 C 0.01 0.39 5.46 84.66 0.46 0.86 16 7 N -0.93 -56.25 13.29 21.45 0.28 -55.96 16 8 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 9 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 C 0.52 21.81 7.44 87.66 0.65 22.46 16 13 O -0.58 -28.60 12.68 -3.03 -0.04 -28.63 16 14 C -0.16 -4.71 4.31 -11.54 -0.05 -4.76 16 15 H 0.15 3.94 6.79 -2.39 -0.02 3.93 16 16 C -0.09 -2.15 9.59 30.62 0.29 -1.86 16 17 C -0.12 -3.21 2.64 -52.91 -0.14 -3.35 16 18 C -0.09 -2.72 8.05 71.98 0.58 -2.14 16 19 C 0.53 12.54 7.87 71.23 0.56 13.10 16 20 O -0.54 -15.01 17.02 21.95 0.37 -14.64 16 21 O -0.50 -8.23 12.69 -51.42 -0.65 -8.88 16 22 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 24 H 0.09 2.24 6.64 -2.39 -0.02 2.23 16 25 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 26 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 27 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 28 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.11 2.79 8.05 -2.39 -0.02 2.77 16 30 H 0.05 1.65 7.25 -2.39 -0.02 1.64 16 31 H 0.08 1.97 7.49 -2.39 -0.02 1.95 16 32 H 0.06 2.02 7.02 -2.38 -0.02 2.00 16 33 H 0.43 2.78 9.10 -74.06 -0.67 2.11 16 Total: -1.00 -75.19 287.63 4.34 -70.85 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 0.46 Total: 7.33 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 4.32 Total: 11.88 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -2.15 Total: -84.45 kcal Atomic # 8 Polarization: -51.83 SS G_CDS: -0.32 Total: -52.15 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -75.19 4.34 -70.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713627359.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.669 kcal (2) G-P(sol) polarization free energy of solvation -75.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds